Carg23422 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23422
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Acyl carrier protein
Location	Cucurbita_argyrosperma_scaffold_335 : 62442 .. 64976 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGTCCCATTTCTAGTTTTCGCCAGTCCAAATTCTCTCTCCCTTTTTCTCTATCAGTTCATCAATGGCTTCGATCACAGCTTCATCGTTTTGCGTGCGATCTGCAGCTCCTCAATCGCGCCAAATCGCTGTATGTTTTCAATCCTTTTCTCTTTCTCATGCGTGCATTTATGGATCCGTTGTACGTTTTCGTATTTGCCATGTCTCGTTGTTTTTGTGTAATCGATTGTTTCGAAACTGATCTTCTTAATTCCTACCTTTTGATCTGGATTTTGGCGTCCATTTCTGTTTTAATGCCGTTAATTACGATGTTTGGAGCATTTGTTTGAATCGGTATTGTGTTTGTATTGCATGGTTGTGAAACGTATGGATGATGGACTTCGCATTATCTTTGATTTCAGAATGTTTTATGTCTCTTTATGGTGTTGTTTTACTTTCATTTGTGTAATTTCACTGCTGTTTTGAATTTCTTGCCTAATTTTCACGCTATTTGGGGACAGAGGGCTGAAGAGAATAGTTTTCAAACTATCATCTCCTATCTTTCAAAAATGTTCTGGGAAAATAGCCTGTTCAGTTGAAAAAAAAAAAAAAATCGCAACAGACCTTAATTTTCTCTCGTAATTTTTGCTCGAAAAATTCTAAGCGCAAATGCAAACCATAAATTAAGAGCGATCTTGAAATCCTTGTATACAATTGTTTACCGTTGTAGTTATGAGCCAAGATGAAGTTCTTATGTCCTGAAAAAATTTCTGCATCACTGTATGTGTGTGTCGATTATAATTGATCTCTTGTTCTCTTTGAATTCTTGTTCTCTGCTAAGAACTTGAGCTAATATTAAACGTCCTCTGCTGATTCTTATGGTGAAATTATTTCTTGGTAAGCAGGCAGTATCCAAGCTTCCTGGTTCGAAGAGGGTTTCCTTTTCTTACCAAGGGAGAAATAACTTCTCTTCTAGAAGATTATGGTCGCTTCAAATTTCATGTGCTGTAAGTCCTTTTTACTGCTCTTTAAGTAAAACTTTGGTGCTATTGGCCTTCACCCACCTTTTCTTTTAAAGAATATTCTTTTTACTTTTAATTTTTTTTTAAATATATATACACCATTCATTTCAATTAATCAATTGAAAATTGAGAAATATATTTCAATCAATTTAATTTTTATTTTATCATTTTTATTTATTTATTACTTTTTTATCCACACAGCACCACTTAATTTCAACTAATCAATTAAAATTAAGGGTTAACAATAATAATTTGAGAAATACGTTATATTACCCAAAATAGCAAGTTTTTAAATAAAATCTGACAATATAAATCTCATTTTTCATTTTTATTTATTTCATTTTTTCATCTTCAAAGTACCATTTATTTTCAACTAATCGGTTTTAAAATAACCCTGTGAGAAAGAAATATGTTTGAAATTTAAATTTTCAAAGATTTTGTGAAGAAAACAAGAAAAAAAAATGTTCAAATTTAAAATATAAACATAGCATTTCTTTCCTTATTTAAAAAAGGAAAAACCTGTAAAATTAGTGAAAAAATCAATCACGTACACGTATCATCATAAGGTTAGGCCACGTGTCCGGGCTGCAAGAACCGAGTTTTACCCAACTATTACCCAAATTTTGGTCCCCTGGACAGCGCCAATTACTGTTGCTTTAATGGTATTAATTGGGGTATGGACAGGCGAAACCAGAGACAGTTGAAAAGGTTAGCAGAATAGTGAAGAAGCAATTGGCATTGGCAGATGACTCCATTGTCAATGGCGAGTCCAAATTTTCAACGCTTGGAGCCGATTCTCTCGACACGGTAAACTTCTACTCTACATAAGTCTACTACTCTACATATGTCTACTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGTTGAGGATTATTGAAGTCTCACGTTGTTAACTTAATAGAAAATCATGAATTTATAAGTGAGGAATATTATTTCTGGAAGTCATGAGAGCTTATGCTCAAAGTAGACAATATTATATTACTGTGGAGAATCGTGATTCCTAACATATATATATATATATAAACATTGTATGCGCTTTGACTATGAGACAATGGGCTCATACTATTATAAAGTTTTTGTATATGTGTGTGTGGATCAGGTTGAGATCGTAATGGGGCTGGAGGAAGAATTTGGGATAAGCGTGGAAGAGGAGAGCGCACAGAGCATCACGACCGTCCAAGAGGCTGCAGATATGATCGAGGATCTGATCCTCAAAAAGGGGAGTGCTTAAAAATCCCACTCCCTTTCAGCATCTTACCTTGTTTTTTTGTTTGCCCTTCTGTTTCTTTTACTCGCACTACTGTCACACTGCTACTCAACGTAGTATTAGGTCGTAAAATAATGATACCACTTTTTGTTTCCTAATCTTCTATCTTTAAGATATGTTCCCTAATTAGTTTTTAATCTTCTCTCTTTAAGATATCTTTTACTTTCACTTCTTTTTAATACTTTTAAGCAATAATGTTTGATTTTATT

mRNA sequence

TCCGTCCCATTTCTAGTTTTCGCCAGTCCAAATTCTCTCTCCCTTTTTCTCTATCAGTTCATCAATGGCTTCGATCACAGCTTCATCGTTTTGCGTGCGATCTGCAGCTCCTCAATCGCGCCAAATCGCTGCAGTATCCAAGCTTCCTGGTTCGAAGAGGGTTTCCTTTTCTTACCAAGGGAGAAATAACTTCTCTTCTAGAAGATTATGGTCGCTTCAAATTTCATGTGCTGCGAAACCAGAGACAGTTGAAAAGGTTAGCAGAATAGTGAAGAAGCAATTGGCATTGGCAGATGACTCCATTGTCAATGGCGAGTCCAAATTTTCAACGCTTGGAGCCGATTCTCTCGACACGGTTGAGATCGTAATGGGGCTGGAGGAAGAATTTGGGATAAGCGTGGAAGAGGAGAGCGCACAGAGCATCACGACCGTCCAAGAGGCTGCAGATATGATCGAGGATCTGATCCTCAAAAAGGGGAGTGCTTAAAAATCCCACTCCCTTTCAGCATCTTACCTTGTTTTTTTGTTTGCCCTTCTGTTTCTTTTACTCGCACTACTGTCACACTGCTACTCAACGTAGTATTAGGTCGTAAAATAATGATACCACTTTTTGTTTCCTAATCTTCTATCTTTAAGATATGTTCCCTAATTAGTTTTTAATCTTCTCTCTTTAAGATATCTTTTACTTTCACTTCTTTTTAATACTTTTAAGCAATAATGTTTGATTTTATT

Coding sequence (CDS)

ATGGCTTCGATCACAGCTTCATCGTTTTGCGTGCGATCTGCAGCTCCTCAATCGCGCCAAATCGCTGCAGTATCCAAGCTTCCTGGTTCGAAGAGGGTTTCCTTTTCTTACCAAGGGAGAAATAACTTCTCTTCTAGAAGATTATGGTCGCTTCAAATTTCATGTGCTGCGAAACCAGAGACAGTTGAAAAGGTTAGCAGAATAGTGAAGAAGCAATTGGCATTGGCAGATGACTCCATTGTCAATGGCGAGTCCAAATTTTCAACGCTTGGAGCCGATTCTCTCGACACGGTTGAGATCGTAATGGGGCTGGAGGAAGAATTTGGGATAAGCGTGGAAGAGGAGAGCGCACAGAGCATCACGACCGTCCAAGAGGCTGCAGATATGATCGAGGATCTGATCCTCAAAAAGGGGAGTGCTTAA

Protein sequence

MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKGSA

Homology

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BLAST of Carg23422 vs. NCBI nr
Match: XP_022946064.1 (acyl carrier protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 247.7 bits (631), Expect = 2.4e-62
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MASITASSFCVRSAAPQSRQIAAVSKL GSKRVSFSYQGRNNFSSRRL SLQISCAAKPE
Sbjct: 1   MASITASSFCVRSAAPQSRQIAAVSKLSGSKRVSFSYQGRNNFSSRRLRSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKGSA 141
           TTVQEAADMIEDLILKKGSA
Sbjct: 121 TTVQEAADMIEDLILKKGSA 140

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BLAST of Carg23422 vs. NCBI nr
Match: XP_023546824.1 (acyl carrier protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 2.9e-60
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MASITAS FCVRSAAPQSRQIAA SKL GSKRVSFSYQGRNNFSSRRL SLQISCAAKPE
Sbjct: 1   MASITASLFCVRSAAPQSRQIAAGSKLSGSKRVSFSYQGRNNFSSRRLRSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLALADDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKGSA 141
           TTVQEAADMIEDLILKKGSA
Sbjct: 121 TTVQEAADMIEDLILKKGSA 140

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BLAST of Carg23422 vs. NCBI nr
Match: XP_022999576.1 (acyl carrier protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 9.4e-59
Identity = 132/140 (94.29%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MASI+ASSFCVRSA PQSRQIAAVSKL GSKRVSFSYQGRNNFSSRRL SLQISCAAKPE
Sbjct: 1   MASISASSFCVRSAVPQSRQIAAVSKLSGSKRVSFSYQGRNNFSSRRLRSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLALADDS VNGESKFSTLGADSLDTVEIVM LEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSTVNGESKFSTLGADSLDTVEIVMELEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKGSA 141
           TTVQEAADM+E LILKKGSA
Sbjct: 121 TTVQEAADMVEVLILKKGSA 140

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BLAST of Carg23422 vs. NCBI nr
Match: XP_004139206.1 (PREDICTED: acyl carrier protein 1, chloroplastic [Cucumis sativus] >KGN60848.1 hypothetical protein Csa_2G013290 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-54
Identity = 123/139 (88.49%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MASITASS  +RSAAPQ RQIA  SKL GS+RVSFS+QGRNNFSSRRL SL+ISCAAKPE
Sbjct: 1   MASITASSLSLRSAAPQWRQIAGTSKLSGSRRVSFSFQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVS+IVKKQLAL DDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSKIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKGS 140
           TTVQEAAD+IEDLILKKG+
Sbjct: 121 TTVQEAADLIEDLILKKGA 139

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BLAST of Carg23422 vs. NCBI nr
Match: XP_022965998.1 (acyl carrier protein 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-54
Identity = 122/137 (89.05%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MAS++ASSFCVRSAAP+SRQI+  +KL G KRVSFS+QGRN FSSRRL SLQISCAAKPE
Sbjct: 1   MASVSASSFCVRSAAPRSRQISETAKLSGLKRVSFSHQGRNTFSSRRLQSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVS+IVKKQLAL DDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSKIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKK 138
           TTVQEAADMIEDLILKK
Sbjct: 121 TTVQEAADMIEDLILKK 137

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BLAST of Carg23422 vs. TAIR10
Match: AT4G25050.2 (acyl carrier protein 4)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-26
Identity = 81/152 (53.29%), Postives = 100/152 (65.79%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MAS++ +S   +  AP +     + K   S+ V+F   GR   S++ L  LQISCAAK E
Sbjct: 1   MASLSTTSLSFK--APSTTISQVLRKASSSQSVTF---GRFTSSTKSL-RLQISCAAKAE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDT------------VEIVMGLEEEF 120
           TV+KVS IVK+QLALA D  +  ESKFS LGADSLDT            VEIVM LEE+F
Sbjct: 61  TVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVCYTLSVSYHCHVEIVMALEEKF 120

Query: 121 GISVEEESAQSITTVQEAADMIEDLILKKGSA 141
            ISVEE  AQ+ITT+QEAAD+IEDL+ KK +A
Sbjct: 121 NISVEESDAQNITTIQEAADLIEDLVQKKPAA 146

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BLAST of Carg23422 vs. TAIR10
Match: AT5G27200.1 (acyl carrier protein 5)

HSP 1 Score: 113.6 bits (283), Expect = 9.7e-26
Identity = 74/137 (54.01%), Postives = 97/137 (70.80%), Query Frame = 0


Query: 6   ASSFCVRSAAPQSRQIAAVSKLPGSKRVS-FSYQGRNN--FSSRRLW--SLQISCAAKPE 65
           A+SFC  S + Q+   A  ++   +K+ + F+ +  NN  FS RRL    L +SCA K E
Sbjct: 2   ATSFC-SSISMQAPFSATTTRFCLNKQATIFNNEKTNNLSFSLRRLMPARLAVSCAVKQE 61

Query: 66  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 125
           TVEKVS IVKKQL+L DD  V   +KF+ LGADSLDTVEIVMGLEEEFGI++ EE A+ I
Sbjct: 62  TVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADSLDTVEIVMGLEEEFGITMAEERAKEI 121

Query: 126 TTVQEAADMIEDLILKK 138
            TVQ+AA++IE+L+ +K
Sbjct: 122 ATVQQAAELIEELVQEK 137

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BLAST of Carg23422 vs. TAIR10
Match: AT1G54630.1 (acyl carrier protein 3)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 74/141 (52.48%), Postives = 97/141 (68.79%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRV-SFSYQGRNN--FSSRRL-WSLQISCA 60
           MASI  S+     A P+   I       G+K+V SFSY  R+N  F+ R+L   L + CA
Sbjct: 1   MASIATSASTSLQARPRQLVI-------GAKQVKSFSYGSRSNLSFNLRQLPTRLTVYCA 60

Query: 61  AKPETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEES 120
           AKPETV+KV  +V+KQL+L +   +   +KF+ LGADSLDTVEIVMGLEEEFGI + EE 
Sbjct: 61  AKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEK 120

Query: 121 AQSITTVQEAADMIEDLILKK 138
           AQSI TV++AA +IE+L+L+K
Sbjct: 121 AQSIATVEQAAALIEELLLEK 134

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BLAST of Carg23422 vs. TAIR10
Match: AT1G54580.1 (acyl carrier protein 2)

HSP 1 Score: 111.3 bits (277), Expect = 4.8e-25
Identity = 72/140 (51.43%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAA--VSKLPGSKRVSFSYQGRNNFSSRRL-WSLQISCAA 60
           MASI AS+     A P+   IAA  V      +R S S      F+ R+L   L +SCAA
Sbjct: 1   MASIAASASISLQARPRQLAIAASQVKSFSNGRRSSLS------FNLRQLPTRLTVSCAA 60

Query: 61  KPETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESA 120
           KPETV+KV  +V+KQL+L +   +   +KF+ LGADSLDTVEIVMGLEEEFGI + EE A
Sbjct: 61  KPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKA 120

Query: 121 QSITTVQEAADMIEDLILKK 138
           QSI TV++AA +IE+L+ +K
Sbjct: 121 QSIATVEQAAALIEELLFEK 134

[Close]

BLAST of Carg23422 vs. TAIR10
Match: AT3G05020.1 (acyl carrier protein 1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 68/136 (50.00%), Postives = 92/136 (67.65%), Query Frame = 0


Query: 2   ASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPET 61
           AS++  + C+ +     ++ A +S      + + S+  R +  SRR   L +SCAAK ET
Sbjct: 7   ASVSLQTSCLATTRISFQKPALIS---NHGKTNLSFNLRRSIPSRR---LSVSCAAKQET 66

Query: 62  VEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSIT 121
           +EKVS IVKKQL+L  D  V  E+KF+ LGADSLDTVEIVMGLEEEF I + EE AQ I 
Sbjct: 67  IEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIA 126

Query: 122 TVQEAADMIEDLILKK 138
           TV++AA++IE+LI +K
Sbjct: 127 TVEQAAELIEELINEK 136

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BLAST of Carg23422 vs. Swiss-Prot
Match: sp|P52412|ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.0e-33
Identity = 84/133 (63.16%), Postives = 100/133 (75.19%), Query Frame = 0


Query: 6   ASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPETVEKV 65
           ASS C++SA+  +     +S L   + VS     ++ FS R  +SL+++C AKPETV KV
Sbjct: 7   ASSICIKSASCSALAPGRISSL---RSVSLPVSRKSFFSRRGSFSLRVNCQAKPETVTKV 66

Query: 66  SRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQE 125
             IVKKQLAL DDS V+G SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQSI TVQ+
Sbjct: 67  CNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQD 126

Query: 126 AADMIEDLILKKG 139
           AAD+IE L+ KKG
Sbjct: 127 AADLIEKLMEKKG 136

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BLAST of Carg23422 vs. Swiss-Prot
Match: sp|P93092|ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-31
Identity = 85/139 (61.15%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQ--ISCAAK 60
           MAS+T +S  + S     +   A S++   + VS   +G+ +F+  R+ S +  + CAAK
Sbjct: 1   MASVTGTSISMAS----FKASLAPSRVSNLRSVSLPIKGK-SFAPLRMRSARFVVCCAAK 60

Query: 61  PETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 120
           PETVEKV  IVKKQLAL DDS V GESKF+TLGADSLDTVEIVMGLEEEFGI+VEEESAQ
Sbjct: 61  PETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQ 120

Query: 121 SITTVQEAADMIEDLILKK 138
           SI TVQ+AAD+IE LI KK
Sbjct: 121 SIATVQDAADLIEKLIEKK 134

[Close]

BLAST of Carg23422 vs. Swiss-Prot
Match: sp|P52411|ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-30
Identity = 88/143 (61.54%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 1   MASITA-SSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNF----SSRRLWSLQISC 60
           MAS  A +S C++SA   S    A  ++   + VS     R +F    SS+  ++L++SC
Sbjct: 1   MASAAAGASICIKSA---SFSPLAPGRISSLRSVSLPV-SRKSFPSLKSSKSSFALRVSC 60

Query: 61  AAKPETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEE 120
            AKPETV KV  IVKKQLAL DDS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEE
Sbjct: 61  QAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEE 120

Query: 121 SAQSITTVQEAADMIEDLILKKG 139
           SAQSI TVQ+AAD+IE L+ KKG
Sbjct: 121 SAQSIQTVQDAADLIEKLMEKKG 139

[Close]

BLAST of Carg23422 vs. Swiss-Prot
Match: sp|P52414|ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.1e-30
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MASITA-SSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKP 60
           MAS  A +S C++SA+        +S L  S  +  S +   +  S +    ++SC AKP
Sbjct: 1   MASAAAGASICIKSASCSPLAPGRISSL-RSVSLPVSRKSFPSLRSSKGSFARVSCQAKP 60

Query: 61  ETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQS 120
           ETV KV RIVKKQLAL DDS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQS
Sbjct: 61  ETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQS 120

Query: 121 ITTVQEAADMIEDLILKKG 139
           I TVQ+AAD+IE L+ KKG
Sbjct: 121 IQTVQDAADLIEKLMEKKG 138

[Close]

BLAST of Carg23422 vs. Swiss-Prot
Match: sp|Q9SW21|ACP4_ARATH (Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP4 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-28
Identity = 81/140 (57.86%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MAS++ +S   +  AP +     + K   S+ V+F   GR   S++ L  LQISCAAK E
Sbjct: 1   MASLSTTSLSFK--APSTTISQVLRKASSSQSVTF---GRFTSSTKSL-RLQISCAAKAE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TV+KVS IVK+QLALA D  +  ESKFS LGADSLDTVEIVM LEE+F ISVEE  AQ+I
Sbjct: 61  TVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEESDAQNI 120

Query: 121 TTVQEAADMIEDLILKKGSA 141
           TT+QEAAD+IEDL+ KK +A
Sbjct: 121 TTIQEAADLIEDLVQKKPAA 134

[Close]

BLAST of Carg23422 vs. TrEMBL
Match: tr|A0A0A0LG91|A0A0A0LG91_CUCSA (Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_2G013290 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 9.3e-55
Identity = 123/139 (88.49%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MASITASS  +RSAAPQ RQIA  SKL GS+RVSFS+QGRNNFSSRRL SL+ISCAAKPE
Sbjct: 1   MASITASSLSLRSAAPQWRQIAGTSKLSGSRRVSFSFQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVS+IVKKQLAL DDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSKIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKGS 140
           TTVQEAAD+IEDLILKKG+
Sbjct: 121 TTVQEAADLIEDLILKKGA 139

[Close]

BLAST of Carg23422 vs. TrEMBL
Match: tr|A0A1S3C143|A0A1S3C143_CUCME (Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103495677 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-53
Identity = 121/139 (87.05%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60
           MASITASS  +R+A P  RQIA  SKL GS+ VSFSYQGRNNFSSRRL SL+ISCAAKPE
Sbjct: 1   MASITASSLSLRTAPPHCRQIAGTSKLSGSRMVSFSYQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLAL DDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKGS 140
           TTVQEAAD+IEDLILKKG+
Sbjct: 121 TTVQEAADLIEDLILKKGA 139

[Close]

BLAST of Carg23422 vs. TrEMBL
Match: tr|M5W1R0|M5W1R0_PRUPE (Acyl carrier protein OS=Prunus persica OX=3760 GN=PRUPE_6G335300 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-32
Identity = 89/140 (63.57%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 1   MASIT-ASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFS---SRRLWSLQISCA 60
           MA+I+ ASS  +RS  P+S Q  A+S+  G + +S S  GR++ S    +R   L +SCA
Sbjct: 1   MAAISGASSISLRSIPPRSHQNLALSRTNGLRSISLSDHGRSSLSFGLQQRSVRLSVSCA 60

Query: 61  AKPETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEES 120
           AKPETVEKV  IV+KQLAL DDS V GESKF+ LGADSLDTVEIVMGLEEEFGISVEE+S
Sbjct: 61  AKPETVEKVCTIVRKQLALPDDSAVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEDS 120

Query: 121 AQSITTVQEAADMIEDLILK 137
           AQSI TVQ+AAD+IE +I K
Sbjct: 121 AQSIATVQDAADLIEKIIEK 140

[Close]

BLAST of Carg23422 vs. TrEMBL
Match: tr|A0A103YGB6|A0A103YGB6_CYNCS (Acyl carrier protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_013044 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.8e-32
Identity = 90/141 (63.83%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQ-SRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKP 60
           MA+ T +SF    ++ Q SRQ  A +++ G K VSFS  GR+N        LQ+SCAAK 
Sbjct: 1   MATFTGASFTTLLSSQQISRQCLAPTRISGLKLVSFSRSGRSNL-PLSFHRLQVSCAAKQ 60

Query: 61  ETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQS 120
           ETVEKV  IV+KQLAL DD+ V GESKF+ LGADSLDTVEIVMGLEEEFGISVEEESAQS
Sbjct: 61  ETVEKVCGIVRKQLALNDDTAVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQS 120

Query: 121 ITTVQEAADMIEDLILKKGSA 141
           I TVQ+AAD+IE LI K  +A
Sbjct: 121 IATVQDAADLIEKLIEKTSTA 140

[Close]

BLAST of Carg23422 vs. TrEMBL
Match: tr|A0A151STF1|A0A151STF1_CAJCA (Acyl carrier protein OS=Cajanus cajan OX=3821 GN=KK1_004332 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.4e-32
Identity = 89/142 (62.68%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFS---SRRLWSLQISCAA 60
           MASITA+SF       Q++ +    ++P +  VS S +G    S    RR+  LQ+SCAA
Sbjct: 1   MASITATSFSFN----QTQTLVPARRIPNTGLVSLSIKGTTFPSLTLQRRVPRLQVSCAA 60

Query: 61  KPETVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESA 120
           KPETV+KV  IVKKQLAL D+S VNGESKF+ LGADSLDTVEIVMGLEE FGISVEEESA
Sbjct: 61  KPETVKKVCDIVKKQLALPDESAVNGESKFAALGADSLDTVEIVMGLEEAFGISVEEESA 120

Query: 121 QSITTVQEAADMIEDLILKKGS 140
           QSITTVQEAADMI+ L+  K +
Sbjct: 121 QSITTVQEAADMIDKLLESKSA 138

The following BLAST results are available for this feature:

BLAST of Carg23422 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946064.1	2.4e-62	98.57	acyl carrier protein 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023546824.1	2.9e-60	96.43	acyl carrier protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022999576.1	9.4e-59	94.29	acyl carrier protein 2, chloroplastic-like [Cucurbita maxima]	[more]
XP_004139206.1	1.4e-54	88.49	PREDICTED: acyl carrier protein 1, chloroplastic [Cucumis sativus] >KGN60848.1 h...	[more]
XP_022965998.1	1.4e-54	89.05	acyl carrier protein 1, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Carg23422 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25050.2	1.2e-26	53.29	acyl carrier protein 4	[more]
AT5G27200.1	9.7e-26	54.01	acyl carrier protein 5	[more]
AT1G54630.1	1.3e-25	52.48	acyl carrier protein 3	[more]
AT1G54580.1	4.8e-25	51.43	acyl carrier protein 2	[more]
AT3G05020.1	1.1e-24	50.00	acyl carrier protein 1	[more]

BLAST of Carg23422 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P52412\|ACP2_CUPLA	6.0e-33	63.16	Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=...	[more]
sp\|P93092\|ACP1_CASGL	4.3e-31	61.15	Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 S...	[more]
sp\|P52411\|ACP1_CUPLA	2.1e-30	61.54	Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=...	[more]
sp\|P52414\|ACP4_CUPLA	8.1e-30	61.15	Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 ...	[more]
sp\|Q9SW21\|ACP4_ARATH	4.5e-28	57.86	Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP4 PE...	[more]

BLAST of Carg23422 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LG91\|A0A0A0LG91_CUCSA	9.3e-55	88.49	Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_2G013290 PE=3 SV=1	[more]
tr\|A0A1S3C143\|A0A1S3C143_CUCME	1.3e-53	87.05	Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103495677 PE=3 SV=1	[more]
tr\|M5W1R0\|M5W1R0_PRUPE	2.2e-32	63.57	Acyl carrier protein OS=Prunus persica OX=3760 GN=PRUPE_6G335300 PE=3 SV=1	[more]
tr\|A0A103YGB6\|A0A103YGB6_CYNCS	3.8e-32	63.83	Acyl carrier protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_013044...	[more]
tr\|A0A151STF1\|A0A151STF1_CAJCA	8.4e-32	62.68	Acyl carrier protein OS=Cajanus cajan OX=3821 GN=KK1_004332 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006633	fatty acid biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0031177	phosphopantetheine binding

Vocabulary: **INTERPRO**
Term	Definition
IPR006162	Ppantetheine_attach_site
IPR003231	Acyl_carrier
IPR009081	PP-bd_ACP
IPR036736	ACP-like_sf
IPR020806	PKS_PP-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031177	phosphopantetheine binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23422-RA	Carg23422-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020806	Polyketide synthase, phosphopantetheine-binding domain	SMART	SM00823	PKS_PP	coord: 62..116 e-value: 0.0057 score: 19.2
IPR036736	ACP-like superfamily	GENE3D	G3DSA:1.10.1200.10		coord: 57..137 e-value: 2.7E-23 score: 84.0
IPR036736	ACP-like superfamily	SUPERFAMILY	SSF47336	ACP-like	coord: 59..134
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 64..130 e-value: 9.0E-11 score: 41.9
IPR009081	Phosphopantetheine binding ACP domain	PROSITE	PS50075	CARRIER	coord: 59..134 score: 21.816
IPR003231	Acyl carrier protein (ACP)	TIGRFAM	TIGR00517	TIGR00517	coord: 60..132 e-value: 1.4E-24 score: 83.7
IPR003231	Acyl carrier protein (ACP)	PRODOM	PD000887		coord: 91..132 e-value: 5.0E-8 score: 132.0
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 60..134 score: 16.621
None	No IPR available	PANTHER	PTHR20863	ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED	coord: 1..137
None	No IPR available	PANTHER	PTHR20863:SF29	ACYL CARRIER PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 1..137
IPR006162	Phosphopantetheine attachment site	PROSITE	PS00012	PHOSPHOPANTETHEINE	coord: 89..104

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23422	Cla019842	Watermelon (97103) v1	carwmB0290
Carg23422	Csa2G013290	Cucumber (Chinese Long) v2	carcuB0324
Carg23422	MELO3C004338	Melon (DHL92) v3.5.1	carmeB0298
Carg23422	ClCG02G016240	Watermelon (Charleston Gray)	carwcgB0290
Carg23422	CSPI02G03370	Wild cucumber (PI 183967)	carcpiB0330
Carg23422	Cucsa.133640	Cucumber (Gy14) v1	carcgyB0349
Carg23422	CmaCh05G011710	Cucurbita maxima (Rimu)	carcmaB0410
Carg23422	CmaCh12G010950	Cucurbita maxima (Rimu)	carcmaB0409
Carg23422	CmoCh05G011960	Cucurbita moschata (Rifu)	carcmoB0405
Carg23422	CmoCh12G011120	Cucurbita moschata (Rifu)	carcmoB0404
Carg23422	Lsi11G004850	Bottle gourd (USVL1VR-Ls)	carlsiB271
Carg23422	Cp4.1LG11g09500	Cucurbita pepo (Zucchini)	carcpeB0410
Carg23422	Cp4.1LG07g09400	Cucurbita pepo (Zucchini)	carcpeB0411
Carg23422	CsGy2G003470	Cucumber (Gy14) v2	carcgybB0310
Carg23422	MELO3C004338.2	Melon (DHL92) v3.6.1	carmedB0309
Carg23422	CsaV3_2G004530	Cucumber (Chinese Long) v3	carcucB0330
Carg23422	Cla97C02G042070	Watermelon (97103) v2	carwmbB0306
Carg23422	Bhi06G001482	Wax gourd	carwgoB0384

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23422	Silver-seed gourd	carcarB325