Lsi11G001070 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G001070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal L15
Location	chr11 : 1148654 .. 1155948 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGGGTATCGAACCCCGTACCTCTCGCATGCAAAGCGAGCGCTCTACCGTTTGAGCTACATCCCCAGCTTGTTGAATTAACTCTTCATTTATAGCTTAATGGATAATTCAACACCACCACTTTAAACTCTCTTTGTTTTTGTGATTCTTTGCAACCTTTTTTACTATATGTTTCTTTCATTTTCTTTTCATTTCAATTTTGTTGTTTCTGCGTCCATGTATTTTCAAAATTGATACCCAAATTTATTATGCAATGTCAATTAAATTCTTTTTCATCCACTACATTATTCAGAAATAGTTTGAAATTGGAATACATGTGAAAATTGAATAGACTCTCTTGACTGATTTTTAAAATCTACGTAATCACTCATCTCCTAAAAAAGGAAATATTTGAATTCTAAAATTTTCTAAAAATACAATTTGGAAATAAATTAAACATGTAATGAGTCAAAATTTGGTCAAAATTTTGGAACGTCCAAATGCTAGAAGAAACGCCTAAGAATCTTCCCAGAGGAAGCTAGAATCTTCCCAGAGGAAGCTTTTTATGTGAAGAGGCTTAGAGGACCCACGAGGGGGTCTAGCAGAGGCTTAGATAACCCATGGGGAAGTTCATATTAACATGAAGGATTTAGGAGTCACATAAAAAACCCATGAAAGACCTCTGCACGATTCATGGAGGAATTAAAAGTCACATAGAGGACTTTGGAGGACTCGTGGCATACCTTTGCAAGACCCATGGAGAACTAAGGAGTCCTACGAGTAACTTTGAGGACCCTTGAAAATCCTTTGTAGGACCCATGGAGGAGTTAGGAGCTTCATATATGACTTTGGGGGGATTTAGAGGACCCATGGAAGACCTTAGCGCGATCGAGTTTGAAATCGTCTAGATTCTTAACATATGAGTCATGAAGGAATTATTGAGAATTTGAGTGTGGGTGATGCACCTAAGCATTAGCTGCAACCTCAAATGGTATTAGTGGCCAAATGAGTATTAACTTAACGATTCTGGAAATTAAAACGAGCAGTTATGAGCCCGAGTGTTAGTTATGCATTACCATCATATATAAATAACCAAAGTCATTAGTCGAAGGTATGCCTAAAATCATATACTATTTTCTACTGTCAATTTACTCACAAACTCAAGACTACTCGAGTATCGGAGTATATGTGGCTTACATCACACTAGTGCTTAATTTCTTTTGTCTTGTAGGTACTTGGAGTATTTTCTCATAAAACACAAATTTAGGATTGATCCATTTTTTGACATCAACAGACTTTATCTTTAGTTCTAAATATTTTTTAATTATAAATTTTCAATTGTTATACATTCTAATTCAATTCATTTTTTTCAATTTCCTATTTAAACCCTAAATTCCATAAAGTCATGGGTATGAAACGTTTTCTTCAATTTTACGTTTCCTCTTTACATTCTAGTTTTTTTAAGGAAAATTACTATAAACGGGAAAAATATCAAACTATTTACAAATATAGAAAATTTTTACTGTCTATCAGTGATAGATCACGATAAAATTCGATCGCATTCTATCGCTCAAGCAAATAAATTCTATCGTTTGAGCGATAGAAAGCGATAGAATTCTATCGCGGTCTATCACTGATAGACTATAAAATTTTTTTATATTTGTAAATAGTTTGACTCGTTTTTCTATATTTGTAAACAACCATTTTTTTAATTAATTTTCATTGTAAATTTTAAATTTAATCGGATGTTACTTCAATATAAAAAAGTAAAAAGTATTTAGATATCTTATAAATCAAGATAAATGTAAAATTGAAATTAAAATTTAGAAGTGTGACTGTAACAAACTACAAATTGTGATTGAATTTTTATGGGACACAATCTTTTATATGGTTAGTTAAATTTAATAGAATGTAGAAGGGTTAGAGCATAGATTTCTTGATCGAGAATATATTATATATATAAGTTGAGTTATGCTCGTTAGACAATATTTAATTGTCTAAATAATAATAATAAAAAAACGACAATAATAAATAAATAAAGAAACAAAAAGGGTAACCCTGATTCCCCCTTGCTTCCCCACTTCACTCTCTCTCTTCCTCTCTTCAGTCGCACAGCTCCGCCCAACTCACACCATTTCTTCGTCTTCCTTCCGCCTGCGGCGTTTGTCGAGCAGCGCAACCCACCACCAATCTTTGGAGAGCCTTGGCGGCACGAGCTCTAGTTCTACGGTAGCAACGTCCGCTTACAGCAGATCCACACAACCTCGACGGCGTCTTGTTGCGCACCACGGCAGCGACCTCAACGTCCAGTTCCAGAGACGTTACTTTCCACGCGTTTATTGGCCGAATAGCGACTTTCAGCAGCAACCCACTCCTTTATTCACCTCGATTCAGTTTGCCCGTATTCCGTAGGGGTCACATTTACGATTTTCAACTCGATCACGTTTCAGCAAAGATTCGAGTCCTTTCGGTAAAGTTTCATGGTTAAATTTGATCTAATCTGTTTCGGATTGAATTTTATTGTTTGAATTCGATTCTATTGATTGTAGCTCTTCTGTTTTAGGTTCTTACTAGTTTCCAACTCTTTCGAACACCTTTCAGCAAAGACCCGAGCTCTTTTTGGTAAGATTTGGGCGGTAACGGTGCTTTGAAACCCTTTCGAACTCGGATGAAATGATTTAGATTTATGTCTACCCTAGGGAACTCGTGGTTGTAGATCCAGACTCATTCGGAGTGTTCATACTAAGGTTTAAGGTCGGTTTTTGGTACGCCCTCTTGAATACTCTTGTCAACTCAATTCAAACCGCTAAGTATTGTCTTTTTTGTCTAGAACTCTTTGGGCTAATTTAGGAGCACTGTAGGCAAGTAGAGTTTACTCGTTGGGTCTGTATGTTGTTTGCTATTTTGCTGTGCTTTATTTGTGCTATTATTATTTATGATGTAAATACTTGACACTCTTAAACTTTTAGGTGCTTTGGATGTTTAAGCTTGCAGGAATGTTGTAATGATGTTGTGACGACTAACATGCTGGGAAGTGGTTGTAGATCTTATGTTTATAAGCACGTGCTACTATTGAAAACGTCTGATTAAGCATATGATTTCTGTTGAGGACACTATTGTTTTATTGTGGTTTTGACATAGAGAAGGGTTAGAATCATATTGTTAGACTCATACATTTGAGTGGGATTGTGTGAGAAAGAAGTTCAAAGTAGTTCGTGCATTTATGAAGGAAAGTGGGTGCATATCGGTGTGCCTTAGGTAAAAATGGTCACGAGGTGACATGTTATTGTTGGGGAGGGGTAAAAATGATCAATGGTCTACGTAAGGAGTCTACAAAGGCAAATATTGGTGCTCTTGCGAGAGAGGTACAATATGTTGCTTAGTCATTGAGACATTGGATAAAAATGGTCGAGGGTCAAATGCCGAGCGTCGCAGAGAACATTGAGGCCCAAGATAAAAATTGTAAGGGGTTCCCGCATCTTGAAGGAATCAGTCTCAGGGAGCTTTGGGAGGGCTAAATATGAGTGTCGAGTAGTTGAGTTGAGTGAGCTCATGAAGCTTGCGTAGAGATTGAGTGTGCGTTACATGGCGTGTTGAGTAAAAATCATCAGTACCTATAAAATTTGTTGGTGGCTCAGTACAGAAATGCATACTGAGTAAGCAACTCACACTCGAGTAGCCACCAAATAGCCTACAAGGCAAACATCATGCTATTCACAACAGTTTTATTAGATTTTTAGATCCATCCCCAAGGTTTTGATTTTCTGTTTAATGTTTGATTTGCCTTATCTTTGAACTACCGAACTGTACCTATGATTGAGGGTTGAGGGAGTTTTATTCTTATCATCTATTTTCACAACATAACTTTATCCTTTTTTTAAAAAAATAAAAATAAATTCTACATATCTGTATTGCGTCTCACGTCCTTGTGCTATAATAGTCGCATCATGTTTTGAATTATGTAGGTGACTTTGTTAAGTGTCACTAGGATATGAGGAAAAAACCTATTGTAAACTTCGTATGCATGGTCAAGCTAGATAACACTTGATATTTCTGTATATCACAAAATTAATCTATTTCATTCATAATGCAGCAATCATTCAGTCTATATCCCGCACTGGCTTGAGGAACATAGCCAACTGGTGCAGTTTATAATTCGAACAGAAAAAGGAAGAGGAAATGCTACGAAGACGACTGTGTTACTTGCTATCTAGCTCACTTGCCTCTGTTCATTCTAAACCCCCACCTGCTATTGTAATAAACCAAGCATTATCACGTCCATTCCTAGAGTTCCAGCAAAACCCTAGCCTTGATCGGAGTGTAGGTTTCCCTCTTTCTGGAAATATCTTTGGTTTTCGAGCTTACAGCCTTTTGAGCTTAAATGATCTGAGAGACAAAGTTCCAAGGAAACAGAAGACGCGAAAGGGTCGTGGTATTGGTTCTGGGAAGGGGAAGACGGCTGGGAGAGGTCACAAGGGCCAAAGAGCGAGAGGCTCTGGGAAGCTTGGGTTTGAAGGGGGTCAAACTCCACTTCGTCGCAGGCTTCCTAAAAGAGGCTTTAAAAATCCTTTCAGCCTCACATTTCAGGTATTTGATTTATGTTTTCATCTTATTGCTTTGTTGCCTGTGATCTGTGTTTTAAAAAGCCCACAGCCCACTGAGGCATGCACCTTGGTGCGCTTAAGCTCAAGGCACAACCTTTGTGCGACTGTGCCTCGCTTCTTTAATGAAGCCTACTTGAGGCGTGTGTCTCAAGGCTTGTGATGTGCTTCTCAATGCCTCAAGTTTGATTTCTTACCCTTTTTTTTTCTAGTTTTTAAGAAATAATTATATTAATATTCTTACCATCTCGAATAAAGGTTCTATTTTCTTGAGCTTTTCATTATATTCACCATACTAATTTCCTTCGTACGTCAAAACTTTGTTTACATTTTTCTATTGTATGCCTCATTAAAACAACCTGCGCTTAAGCACTGCATTTTGCATTACTTAATGCACAGCAGATTTGGTATCTTCTGATGTTTGATCCCTAGCAATATTATTTTTGATAGTGTAAAAGACAAATATTTGTTTGGGCAGAATAATTTTTCCTTTGAGTATTATGCTCCTATTTCTTTTGTTTGATTCTTTCTCTTGTTTTACGACAGCCAGTTGGTTTGGGAAAGATTGCTAAACTCATAAATGCTGGGAAAATTGATTCTTCTGAATTAATCACTATGAAAACTCTCAAGGTATTACGTGACGTCTATCTTGATTAGTTTATCAAAAGCCTGAAGTACTTGTTTTTTACTATTGTATCATATTATTATACTTACCATTATGAAAATAGGATACAGGTGCCATTGGAAAACAAATAGAGGATGGAGTAAGATTGATGGGACGTGGTGCCGAACAGATTAAGTGGCCAATTCACCTAGAGGTAAATCTTCAACTAAAAATGTTTTTCTTTTTCCCTTCTGACGTTGACTTCAAAACCTATATGCTCCTTAGGTAAGCTGCTGTTCTGTAAAAATCATTCATAATTCTGGGGTATTGTCATGCGACTAATTTGAAGCTAGTGTACTCTTCCCAGCAGGTTCTAGTGTTGCAGATGTCTTTCCAAGGGTTGCATTTAGCTTTCTTTCTAGTCTGGTTCGGGATCCAATTGCCCTTATTTGCTATAACATAATGAATATGTTAGGTTTCAATCCCTGCACTCAGTAAAATCCAACAAGAAGCAACAAATACATAACAATATCTACTCTGTTTTACAATGTATTTCCAAATAGAAGTTCCAAAGCAACAATATAACTACATGAGTATTCGATCACAGTATAATAAAGTTCAAAAAAATAGCTCCAGCACATTCGAAAGAGCGGGATATTGTTAGGTACTTAAGCATCTTGGAGAACCACACTCCAAATGCCACCTATTGAGGTGAGACCACCAAGTCACTTAAGTACTACATTGGTCATTTCATTCTAACCGATGTGGGATAAAGGTAACCTATACTACCTTGGTTCCTGACAATACCCCATTCCTAGAGAGCCGACGTTCTAGTGGCTAGGCCGATGGTACTTCACTCAAAAACACCCAACCAGAAGCCTTCGCCGGTACTCCTTTGGAACGTCGATAACCGGCTCCGATACTTTTGTTAGGTACTTAAGCACCTTGGAGAACCACATCCCAAAAGCCAACTATTGAGGTGAGAGAGCCAAGCCACTCAAGACCATATTGGCCATCCTATTCTAACCAATGTAAATTAAGCACGTCAATCACAAGCAATGGTTATCCCCCTTCGAGAGTATGTATAAAGGATTCAGAGTCTCAAAGACTTTCTGTTTGTGTAGCTTTGCTGACATTGTTATTTGCTTGTGATTGACGTGCTGAGTTTGCGTAGTGTTGGAAAAAAAACAATTTAGAGATTGCAAAACTTTTATGTTCAAGTTTTGTGATAGTCAAGTCTCAAGTCTCTCATCTTTAACCAAGTGGATTGGTCCAATAGCCTCAGATATTGCTAGCAAGAGCTTCTTGCACTTGGAACTAATCTTAAATGTGTGATGTTTTCAGGTGTCGAGGGTCACTGTTAGGGCGAAGGAAGCTGTCGAAGCTGCCGGTGGGACTGTTCGGAGAGTGTATTACAATAAACTAGGCTTTCGGGCGCTTCTCAAGCCTGAGTGGTTTGAAAAGAAAGGCAGACTCCTGCCACGAGCGGCGAGGCCACCACCAAAGCAGCGAGACAAAGTCGACAGCATTGGCCGCTTGCCTGCTCCAACTAAACCCATTCCTTTTTCAGTTGAAGATGAAGATGGAGGAAGGGCAGCTTCCAATTTGTCTACCTAATCATAGTCATCAGACTTCGAATGAAGGAATTTAACTTTTGGTTGCCTTTTTCAAATGCGTTTTCTCTAGCAATCTGGTCATGATTTTGCTAATGTTAGTGTTCACACATTTCTTAGGATTAATGATGGACGTTGGCCGCTCTTCACCTGAGATTTTAAGGATTCAGGGTGGCAATAAAAATCACTGTCATCTTATCTACTATCAAGTTCAATATAAGATAATATGTGCATAACTCTGAGATATATATTTTTGTTAAATTAACAATTTGGTCCATATGATTTGAAAAAAATTAAGAATTTAGTCCTTATGGTTTGAAAAGAATTAGAATTTAGTCTCCATAATTTTAAATGTTAGAGTTTGGTCCCTATGGTTTGGAGAAATTTATAATTTAGACCCTGTAGTTTAGAAAAAGTTAGAATTTAATCCTTATCCTAGGGACTACTTATGAGACTTTATCAAACTATAGAGACTAAATTCTAATTTTAAGCTATA

mRNA sequence

ATGCGGGTCGCACAGCTCCGCCCAACTCACACCATTTCTTCGTCTTCCTTCCGCCTGCGGCGTTTGTCGAGCAGCGCAACCCACCACCAATCTTTGGAGAGCCTTGGCGGCACGAGCTCTAGTTCTACGGTAGCAACGTCCGCTTACAGCAGATCCACACAACCTCGACGGCGTCTTAAAAAGGAAGAGGAAATGCTACGAAGACGACTGTGTTACTTGCTATCTAGCTCACTTGCCTCTGTTCATTCTAAACCCCCACCTGCTATTGTAATAAACCAAGCATTATCACGTCCATTCCTAGAGTTCCAGCAAAACCCTAGCCTTGATCGGAGTGTAGGTTTCCCTCTTTCTGGAAATATCTTTGGTTTTCGAGCTTACAGCCTTTTGAGCTTAAATGATCTGAGAGACAAAGTTCCAAGGAAACAGAAGACGCGAAAGGGTCGTGGTATTGGTTCTGGGAAGGGGAAGACGGCTGGGAGAGGTCACAAGGGCCAAAGAGCGAGAGGCTCTGGGAAGCTTGGGTTTGAAGGGGGTCAAACTCCACTTCGTCGCAGGCTTCCTAAAAGAGGCTTTAAAAATCCTTTCAGCCTCACATTTCAGCCAGTTGGTTTGGGAAAGATTGCTAAACTCATAAATGCTGGGAAAATTGATTCTTCTGAATTAATCACTATGAAAACTCTCAAGGATACAGGTGCCATTGGAAAACAAATAGAGGATGGAGTAAGATTGATGGGACGTGGTGCCGAACAGATTAAGTGGCCAATTCACCTAGAGGTGTCGAGGGTCACTGTTAGGGCGAAGGAAGCTGTCGAAGCTGCCGGTGGGACTGTTCGGAGAGTGTATTACAATAAACTAGGCTTTCGGGCGCTTCTCAAGCCTGAGTGGTTTGAAAAGAAAGGCAGACTCCTGCCACGAGCGGCGAGGCCACCACCAAAGCAGCGAGACAAAGTCGACAGCATTGGCCGCTTGCCTGCTCCAACTAAACCCATTCCTTTTTCAGTTGAAGATGAAGATGGAGGAAGGGCAGCTTCCAATTTGTCTACCTAATCATAGTCATCAGACTTCGAATGAAGGAATTTAACTTTTGGTTGCCTTTTTCAAATGCGTTTTCTCTAGCAATCTGGTCATGATTTTGCTAATGTTAGTGTTCACACATTTCTTAGGATTAATGATGGACGTTGGCCGCTCTTCACCTGAGATTTTAAGGATTCAGGGTGGCAATAAAAATCACTGTCATCTTATCTACTATCAAGTTCAATATAAGATAATATGTGCATAACTCTGAGATATATATTTTTGTTAAATTAACAATTTGGTCCATATGATTTGAAAAAAATTAAGAATTTAGTCCTTATGGTTTGAAAAGAATTAGAATTTAGTCTCCATAATTTTAAATGTTAGAGTTTGGTCCCTATGGTTTGGAGAAATTTATAATTTAGACCCTGTAGTTTAGAAAAAGTTAGAATTTAATCCTTATCCTAGGGACTACTTATGAGACTTTATCAAACTATAGAGACTAAATTCTAATTTTAAGCTATA

Coding sequence (CDS)

ATGCGGGTCGCACAGCTCCGCCCAACTCACACCATTTCTTCGTCTTCCTTCCGCCTGCGGCGTTTGTCGAGCAGCGCAACCCACCACCAATCTTTGGAGAGCCTTGGCGGCACGAGCTCTAGTTCTACGGTAGCAACGTCCGCTTACAGCAGATCCACACAACCTCGACGGCGTCTTAAAAAGGAAGAGGAAATGCTACGAAGACGACTGTGTTACTTGCTATCTAGCTCACTTGCCTCTGTTCATTCTAAACCCCCACCTGCTATTGTAATAAACCAAGCATTATCACGTCCATTCCTAGAGTTCCAGCAAAACCCTAGCCTTGATCGGAGTGTAGGTTTCCCTCTTTCTGGAAATATCTTTGGTTTTCGAGCTTACAGCCTTTTGAGCTTAAATGATCTGAGAGACAAAGTTCCAAGGAAACAGAAGACGCGAAAGGGTCGTGGTATTGGTTCTGGGAAGGGGAAGACGGCTGGGAGAGGTCACAAGGGCCAAAGAGCGAGAGGCTCTGGGAAGCTTGGGTTTGAAGGGGGTCAAACTCCACTTCGTCGCAGGCTTCCTAAAAGAGGCTTTAAAAATCCTTTCAGCCTCACATTTCAGCCAGTTGGTTTGGGAAAGATTGCTAAACTCATAAATGCTGGGAAAATTGATTCTTCTGAATTAATCACTATGAAAACTCTCAAGGATACAGGTGCCATTGGAAAACAAATAGAGGATGGAGTAAGATTGATGGGACGTGGTGCCGAACAGATTAAGTGGCCAATTCACCTAGAGGTGTCGAGGGTCACTGTTAGGGCGAAGGAAGCTGTCGAAGCTGCCGGTGGGACTGTTCGGAGAGTGTATTACAATAAACTAGGCTTTCGGGCGCTTCTCAAGCCTGAGTGGTTTGAAAAGAAAGGCAGACTCCTGCCACGAGCGGCGAGGCCACCACCAAAGCAGCGAGACAAAGTCGACAGCATTGGCCGCTTGCCTGCTCCAACTAAACCCATTCCTTTTTCAGTTGAAGATGAAGATGGAGGAAGGGCAGCTTCCAATTTGTCTACCTAA

Protein sequence

MRVAQLRPTHTISSSSFRLRRLSSSATHHQSLESLGGTSSSSTVATSAYSRSTQPRRRLKKEEEMLRRRLCYLLSSSLASVHSKPPPAIVINQALSRPFLEFQQNPSLDRSVGFPLSGNIFGFRAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEKKGRLLPRAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDEDGGRAASNLST

Homology

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BLAST of Lsi11G001070 vs. Swiss-Prot
Match: RL15_RHOPB (50S ribosomal protein L15 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplO PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-28
Identity = 77/152 (50.66%), Postives = 103/152 (67.76%), Query Frame = 1


Query: 129 LSLNDLRDKV-PRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKL-GFEGGQTPLRRRL 188
           + L+D+ D    RK++ R GRGIGSGKGKTAGRG KGQ AR   ++ GFEGGQ PL RRL
Sbjct: 1   MKLSDIADNAGSRKKRMRVGRGIGSGKGKTAGRGGKGQTARSGVRIKGFEGGQMPLHRRL 60

Query: 189 PKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLMGR 248
           PKRGF N F L F  + L ++ + ++A  ID S +I  +TL  +G + ++ +DGVRL+GR
Sbjct: 61  PKRGFNNIFRLDFAEINLDRLQEAVDAKTIDGSGVINAETLVASGVL-RRAKDGVRLLGR 120

Query: 249 GAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVR 279
           G  ++K  + +EV   T  A EAVE AGGTV+
Sbjct: 121 G--ELKAKLTIEVHGATKTAIEAVEKAGGTVK 149

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BLAST of Lsi11G001070 vs. Swiss-Prot
Match: RL15_RHORT (50S ribosomal protein L15 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=rplO PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.9e-28
Identity = 76/151 (50.33%), Postives = 103/151 (68.21%), Query Frame = 1


Query: 129 LSLNDLRDKV-PRKQKTRKGRGIGSGKGKTAGRGHKGQRAR-GSGKLGFEGGQTPLRRRL 188
           + LN+LRD     K + R GRGIGSGKGKTAGRG KGQ++R G    GFEGGQ P+ RRL
Sbjct: 1   MKLNELRDNPGATKNRIRVGRGIGSGKGKTAGRGVKGQKSREGVSINGFEGGQMPIYRRL 60

Query: 189 PKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLMGR 248
           PKRGF NP   +F  V L +I K I+A K+D++ +IT K L + G + ++ +DGVRL+G+
Sbjct: 61  PKRGFNNPTRKSFAVVNLDRIQKAIDAKKLDATAVITEKALIEAGLV-RRSQDGVRLLGK 120

Query: 249 GAEQIKWPIHLEVSRVTVRAKEAVEAAGGTV 278
           G   +K  + +EV+  +  A+E VE AGGT+
Sbjct: 121 GELSVK--VAIEVAGASATAREGVEKAGGTL 148

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BLAST of Lsi11G001070 vs. Swiss-Prot
Match: RL15_GLUDA (50S ribosomal protein L15 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplO PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-28
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1


Query: 129 LSLNDLRDKV-PRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKL-GFEGGQTPLRRRL 188
           ++LN+LRD    R +K R GRGIGSGKGKT+G+G KGQ+AR    L GFEGGQ PL RRL
Sbjct: 1   MNLNELRDNAGSRYRKKRLGRGIGSGKGKTSGKGVKGQKAREGVSLNGFEGGQLPLYRRL 60

Query: 189 PKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLMGR 248
           PKRGFKN F   + PV LG + K I  GKID+  ++T   L+  G +G     GVRL+ +
Sbjct: 61  PKRGFKNIFRKEYAPVNLGALDKAIADGKIDAGTVVTEDVLRTAGLVGSGKFAGVRLLAK 120

Query: 249 GAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVR 279
           G  ++   + +EVS  +  A  AVE AGG+VR
Sbjct: 121 G--ELARAVTIEVSGASATAVAAVEKAGGSVR 150

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BLAST of Lsi11G001070 vs. Swiss-Prot
Match: RL15_BRASO (50S ribosomal protein L15 OS=Bradyrhizobium sp. (strain ORS278) GN=rplO PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-28
Identity = 75/152 (49.34%), Postives = 106/152 (69.74%), Query Frame = 1


Query: 129 LSLNDLRDKV-PRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKL-GFEGGQTPLRRRL 188
           + L+D+ D    RK++ R GRGIGSGKGKT+GRG KGQ AR   ++ GFEGGQ P+ RRL
Sbjct: 1   MKLSDIADNAGARKKRMRVGRGIGSGKGKTSGRGGKGQTARSGVRIKGFEGGQMPMHRRL 60

Query: 189 PKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLMGR 248
           PKRGF N F+L F  + L +I + I+A K+D+  +I  ++L  +GA+ ++ +DGVRL+GR
Sbjct: 61  PKRGFNNIFALDFVEINLDRIQQAIDAKKLDAGSVINAESLVKSGAL-RRSKDGVRLLGR 120

Query: 249 GAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVR 279
           G  ++K  I++EV   +  A  AVE AGGTV+
Sbjct: 121 G--ELKAKINIEVYGASKSAIAAVEKAGGTVK 149

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BLAST of Lsi11G001070 vs. Swiss-Prot
Match: RL15_XANP2 (50S ribosomal protein L15 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplO PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.4e-28
Identity = 77/151 (50.99%), Postives = 100/151 (66.23%), Query Frame = 1


Query: 129 LSLNDLRDKV-PRKQKTRKGRGIGSGKGKTAGRGHKGQRAR-GSGKLGFEGGQTPLRRRL 188
           ++L D+RD    RK++ R GRGIGSGKGKTAGRG KGQ+AR G    GFEGGQ PL RRL
Sbjct: 1   MNLEDIRDNPGARKKRMRVGRGIGSGKGKTAGRGVKGQKARTGVAIKGFEGGQMPLHRRL 60

Query: 189 PKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLMGR 248
           PKRGF N F L +  V LGKI   + AGK+D+ + +T   L   G + ++ +DGVR++G 
Sbjct: 61  PKRGFHNIFRLDYNEVSLGKIQAAVEAGKLDAGQPVTEAALVAAGVL-RRAKDGVRVLGT 120

Query: 249 GAEQIKWPIHLEVSRVTVRAKEAVEAAGGTV 278
           G  ++   + LEV+  T  A  AVE AGG+V
Sbjct: 121 G--ELSAKVTLEVAYATKSAVAAVEKAGGSV 148

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BLAST of Lsi11G001070 vs. TrEMBL
Match: A0A0A0KP79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G532450 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 4.0e-146
Identity = 271/284 (95.42%), Postives = 275/284 (96.83%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSLASVHSKPPPAIVINQALSRPFLEFQQNPSLDRSVGFPLSGNIFGFR 124
           MLRRRLC LLSSSLASVH+KPPPAIVINQALSRPFLEFQQNP LDR VG   SGNIFGFR
Sbjct: 1   MLRRRLCCLLSSSLASVHTKPPPAIVINQALSRPFLEFQQNPFLDRCVGSLPSGNIFGFR 60

Query: 125 AYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR 184
           A+SLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR
Sbjct: 61  AFSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR 120

Query: 185 RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM 244
           RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM
Sbjct: 121 RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM 180

Query: 245 GRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEKKGRLLP 304
           GRGAE IKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLG RALLKPEWFEKKGRLLP
Sbjct: 181 GRGAEHIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGLRALLKPEWFEKKGRLLP 240

Query: 305 RAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDEDGGRAASNLST 349
           RAARPPPKQ+DKVDSIGRLPAPTKPIPFSVE EDGG+AASNLST
Sbjct: 241 RAARPPPKQQDKVDSIGRLPAPTKPIPFSVEYEDGGKAASNLST 284

[Close]

BLAST of Lsi11G001070 vs. TrEMBL
Match: M5VMS3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008724mg PE=3 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 3.7e-115
Identity = 228/292 (78.08%), Postives = 247/292 (84.59%), Query Frame = 1


Query: 61  KEEEMLRRRLCYLLSSSLASVHSKPPPAIVINQALSRPFLEFQQ----NPSLDRSVGFPL 120
           K+  MLRRR+  LLS+++ S   +  P +  +  +S   L F Q    NPS+  + GF  
Sbjct: 37  KQRNMLRRRVTSLLSTTIRSSSIRTKPTLSASP-ISFQSLHFLQCPNPNPSISNAKGFGF 96

Query: 121 SGNIFGFRAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFE 180
                G RAYSLLSLNDLR KVPRKQKTRKGRGIGSGKGKTAGRGHKGQ+ARGSGKLGFE
Sbjct: 97  QPE--GMRAYSLLSLNDLRGKVPRKQKTRKGRGIGSGKGKTAGRGHKGQKARGSGKLGFE 156

Query: 181 GGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQ 240
           GGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQ
Sbjct: 157 GGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQ 216

Query: 241 IEDGVRLMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWF 300
           I+DGVRLMGRGAEQI+WPIH EVSRVTVRAKEAVEAAGG+VRRVYYNKLGFRALLKPEWF
Sbjct: 217 IKDGVRLMGRGAEQIQWPIHFEVSRVTVRAKEAVEAAGGSVRRVYYNKLGFRALLKPEWF 276

Query: 301 EKKGRLLPRAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDEDGGRAASNLST 349
           EKKGRLLP+AARPPPKQ+DKVDSIGRLPAPTKPIPF  E+E     AS+ ST
Sbjct: 277 EKKGRLLPKAARPPPKQKDKVDSIGRLPAPTKPIPFFTEEE----VASSSST 321

[Close]

BLAST of Lsi11G001070 vs. TrEMBL
Match: W9R8K8_9ROSA (50S ribosomal protein L15 OS=Morus notabilis GN=L484_012191 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.9e-111
Identity = 220/276 (79.71%), Postives = 239/276 (86.59%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSLASVHSKPPPAIVINQALSRPFLEFQQ-NPSLDRSVG-FPLSGNIFG 124
           MLRRR+C +LSSS+ +  +  P  + I Q+L   FL+    N  L+   G F L     G
Sbjct: 1   MLRRRICSILSSSIFNAITPRP--LPIQQSLR--FLQCPNPNSKLNNGGGEFGLWFGFGG 60

Query: 125 FRAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPL 184
           FRAYSLLSLNDLR  VPRKQKTRKGRGIGSGKGKTAGRGHKGQ+ARGSGKLGFEGGQTPL
Sbjct: 61  FRAYSLLSLNDLRGNVPRKQKTRKGRGIGSGKGKTAGRGHKGQKARGSGKLGFEGGQTPL 120

Query: 185 RRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVR 244
           RRR PKRGFKNPFSLTFQPVGLGKIAKLIN GKIDS ELITMKTLKDT AIGKQI+DGVR
Sbjct: 121 RRRFPKRGFKNPFSLTFQPVGLGKIAKLINEGKIDSHELITMKTLKDTEAIGKQIKDGVR 180

Query: 245 LMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEKKGRL 304
           LMGRGA+QIKWPIHLEVSRVTVRAK AVEAAGG+VR+VYYNKLGFRALLKPEWFEKKGRL
Sbjct: 181 LMGRGADQIKWPIHLEVSRVTVRAKAAVEAAGGSVRKVYYNKLGFRALLKPEWFEKKGRL 240

Query: 305 LPRAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDED 339
           LP+AARPPPKQRDKVDSIGRLPAPTKPIPF +E+++
Sbjct: 241 LPKAARPPPKQRDKVDSIGRLPAPTKPIPFFIEEKE 272

[Close]

BLAST of Lsi11G001070 vs. TrEMBL
Match: A0A061E357_THECC (Ribosomal protein L18e/L15 superfamily protein OS=Theobroma cacao GN=TCM_007684 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 3.6e-110
Identity = 217/281 (77.22%), Postives = 237/281 (84.34%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSLASVHSKPPPAIVINQALSRPFLEFQQNPSLDRSVGFPLSGNIF--G 124
           M+RRRL  ++S+S   + +KP    + N +   P L F    SL  S     +G+ +  G
Sbjct: 1   MIRRRLSPIISASSHFLKTKP----ISNPS---PILHFHSFQSLQCSNPVIKNGSFWFQG 60

Query: 125 FRAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPL 184
            RAYSLLSLNDL+DKVPRKQKTRKGRGIGSGKGKTAGRGHKGQ+ARG+GKLGFEGGQTP+
Sbjct: 61  IRAYSLLSLNDLKDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQKARGNGKLGFEGGQTPM 120

Query: 185 RRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVR 244
           RRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDS ELITMKTLKD GAIGKQIEDGVR
Sbjct: 121 RRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSHELITMKTLKDAGAIGKQIEDGVR 180

Query: 245 LMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEKKGRL 304
           LMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGG+VRRV+YNKLG RALLKPEWFEKKGRL
Sbjct: 181 LMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGSVRRVHYNKLGLRALLKPEWFEKKGRL 240

Query: 305 LPRAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDEDGGRAA 344
           LP+ ARPPPK +DKVDSIGRLPAPTKPIPF  E+E     A
Sbjct: 241 LPKPARPPPKLKDKVDSIGRLPAPTKPIPFFTEEEPASSPA 274

[Close]

BLAST of Lsi11G001070 vs. TrEMBL
Match: I1MJF2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G264500 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 5.2e-109
Identity = 215/272 (79.04%), Postives = 232/272 (85.29%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSLA-SVHSKPPPAIVINQALSRPFLEFQQNPSLDRSVGFPLSGNIFGF 124
           MLRRRL  L +S +  S HSKP   +      S PF + + +PS  R +      +  GF
Sbjct: 1   MLRRRLSVLSTSIIRRSNHSKP--ILRYPSIQSHPF-QLRHSPSAYRIISPNAFPDFQGF 60

Query: 125 RAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLR 184
           RAYSLLSLNDLRDKVPRKQ TRKGRGIGSGKGKTAGRGHKGQRAR   KLGFEGGQTPLR
Sbjct: 61  RAYSLLSLNDLRDKVPRKQPTRKGRGIGSGKGKTAGRGHKGQRARKGIKLGFEGGQTPLR 120

Query: 185 RRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRL 244
           RRLPKRGFKNPFSLTFQP+GLGKIAK INAGKIDSSELITMKTLKD G +GKQ++DGVRL
Sbjct: 121 RRLPKRGFKNPFSLTFQPIGLGKIAKFINAGKIDSSELITMKTLKDAGVLGKQMKDGVRL 180

Query: 245 MGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEKKGRLL 304
           MGRG+EQIKWPIHLEVSRVTVRAKEAVEAAGG+VRRVYYNKLG +AL+KPEWFEKKGRLL
Sbjct: 181 MGRGSEQIKWPIHLEVSRVTVRAKEAVEAAGGSVRRVYYNKLGLKALVKPEWFEKKGRLL 240

Query: 305 PRAARPPPKQRDKVDSIGRLPAPTKPIPFSVE 336
           PRAARPPPKQ+DKVDSIGRLPAPTKPIPF VE
Sbjct: 241 PRAARPPPKQKDKVDSIGRLPAPTKPIPFLVE 269

[Close]

BLAST of Lsi11G001070 vs. TAIR10
Match: AT5G64670.1 (AT5G64670.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 389.4 bits (999), Expect = 2.3e-108
Identity = 210/282 (74.47%), Postives = 228/282 (80.85%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSL--ASVHSKPPPAIVINQALSRPFLEFQQNP-------SLDRSVGFP 124
           MLRRRL  ++S+SL  +S H    P  +I    S P L+ + +P       S  R++ F 
Sbjct: 1   MLRRRLLSIISTSLINSSFHQTAKPRFII----SSPLLQCRPSPISTQIPTSTSRALSFQ 60

Query: 125 LSGNIFGFRAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGF 184
                 G RAYSLLSLNDLRD VPRK KTRKGRGIGSGKGKTAGRGHKGQ+ARG+ K GF
Sbjct: 61  ------GIRAYSLLSLNDLRDNVPRKLKTRKGRGIGSGKGKTAGRGHKGQKARGTMKFGF 120

Query: 185 EGGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGK 244
           EGGQTPLRRRLPKRGFKN F L FQPVGLGKIAKLINAGKIDS ELITMKTLKD GAIGK
Sbjct: 121 EGGQTPLRRRLPKRGFKNKFKLHFQPVGLGKIAKLINAGKIDSHELITMKTLKDVGAIGK 180

Query: 245 QIEDGVRLMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEW 304
           QIEDGVRLMGRGA+ IKWP+H EVSRVTVRAKE VEAAGG+VRRVYYNKLG RALLKPEW
Sbjct: 181 QIEDGVRLMGRGADDIKWPLHFEVSRVTVRAKEVVEAAGGSVRRVYYNKLGLRALLKPEW 240

Query: 305 FEKKGRLLPRAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDE 338
           FEKKGRLLP+AARPPPKQ+DKVDSIGRLPAP KPIPF   +E
Sbjct: 241 FEKKGRLLPKAARPPPKQQDKVDSIGRLPAPKKPIPFFAAEE 272

[Close]

BLAST of Lsi11G001070 vs. TAIR10
Match: AT3G25920.1 (AT3G25920.1 ribosomal protein L15)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-09
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1


Query: 140 RKQKTRKGRGIGSGKGKTAGRGHKGQRAR-GSGKL-GFEGGQTPLRRRLPK-RGFKNPFS 199
           RK++ RKGRGI +G+G + G G +GQ++R G G + GFEGGQT L RRLPK RG      
Sbjct: 93  RKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMR 152

Query: 200 LTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAI---GKQIEDGVRLMGRGAEQIKW 259
            +  P  L    K I        + ++++TLK  G I   G++ +  ++++G G  ++  
Sbjct: 153 -SGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTG--ELSM 212

Query: 260 PIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKP----------EWFEKKGRLL 312
            +  +    + +AKE +EA+G T+  +     G +  +KP          E+F KK    
Sbjct: 213 KLTFKARAFSTQAKEKLEASGCTLTVL----PGRKKWVKPSVAKNQARADEYFAKKRAAA 272

[Close]

BLAST of Lsi11G001070 vs. NCBI nr
Match: gi|659121261|ref|XP_008460571.1| (PREDICTED: 54S ribosomal protein L10, mitochondrial [Cucumis melo])

HSP 1 Score: 527.3 bits (1357), Expect = 2.0e-146
Identity = 270/284 (95.07%), Postives = 275/284 (96.83%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSLASVHSKPPPAIVINQALSRPFLEFQQNPSLDRSVGFPLSGNIFGFR 124
           MLRR+LCYLLSSSLASV +KPPPAIVINQAL  PFLEFQQNP LDR VG PLSGNIFGFR
Sbjct: 1   MLRRQLCYLLSSSLASVRTKPPPAIVINQALLHPFLEFQQNPCLDRCVGSPLSGNIFGFR 60

Query: 125 AYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR 184
           A+SLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR
Sbjct: 61  AFSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR 120

Query: 185 RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM 244
           RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM
Sbjct: 121 RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM 180

Query: 245 GRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEKKGRLLP 304
           GRGAE IKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLG RALLKPEWFEKKGRLLP
Sbjct: 181 GRGAEHIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGLRALLKPEWFEKKGRLLP 240

Query: 305 RAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDEDGGRAASNLST 349
           RAARPPPKQ+DKVDSIGRLPAPTKPIPFSVE EDGG+AASNLST
Sbjct: 241 RAARPPPKQQDKVDSIGRLPAPTKPIPFSVEYEDGGKAASNLST 284

[Close]

BLAST of Lsi11G001070 vs. NCBI nr
Match: gi|449450123|ref|XP_004142813.1| (PREDICTED: 54S ribosomal protein L10, mitochondrial [Cucumis sativus])

HSP 1 Score: 525.8 bits (1353), Expect = 5.8e-146
Identity = 271/284 (95.42%), Postives = 275/284 (96.83%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSLASVHSKPPPAIVINQALSRPFLEFQQNPSLDRSVGFPLSGNIFGFR 124
           MLRRRLC LLSSSLASVH+KPPPAIVINQALSRPFLEFQQNP LDR VG   SGNIFGFR
Sbjct: 1   MLRRRLCCLLSSSLASVHTKPPPAIVINQALSRPFLEFQQNPFLDRCVGSLPSGNIFGFR 60

Query: 125 AYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR 184
           A+SLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR
Sbjct: 61  AFSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRR 120

Query: 185 RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM 244
           RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM
Sbjct: 121 RLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLM 180

Query: 245 GRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEKKGRLLP 304
           GRGAE IKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLG RALLKPEWFEKKGRLLP
Sbjct: 181 GRGAEHIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGLRALLKPEWFEKKGRLLP 240

Query: 305 RAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDEDGGRAASNLST 349
           RAARPPPKQ+DKVDSIGRLPAPTKPIPFSVE EDGG+AASNLST
Sbjct: 241 RAARPPPKQQDKVDSIGRLPAPTKPIPFSVEYEDGGKAASNLST 284

[Close]

BLAST of Lsi11G001070 vs. NCBI nr
Match: gi|595797630|ref|XP_007201295.1| (hypothetical protein PRUPE_ppa008724mg [Prunus persica])

HSP 1 Score: 422.9 bits (1086), Expect = 5.3e-115
Identity = 228/292 (78.08%), Postives = 247/292 (84.59%), Query Frame = 1


Query: 61  KEEEMLRRRLCYLLSSSLASVHSKPPPAIVINQALSRPFLEFQQ----NPSLDRSVGFPL 120
           K+  MLRRR+  LLS+++ S   +  P +  +  +S   L F Q    NPS+  + GF  
Sbjct: 37  KQRNMLRRRVTSLLSTTIRSSSIRTKPTLSASP-ISFQSLHFLQCPNPNPSISNAKGFGF 96

Query: 121 SGNIFGFRAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFE 180
                G RAYSLLSLNDLR KVPRKQKTRKGRGIGSGKGKTAGRGHKGQ+ARGSGKLGFE
Sbjct: 97  QPE--GMRAYSLLSLNDLRGKVPRKQKTRKGRGIGSGKGKTAGRGHKGQKARGSGKLGFE 156

Query: 181 GGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQ 240
           GGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQ
Sbjct: 157 GGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQ 216

Query: 241 IEDGVRLMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWF 300
           I+DGVRLMGRGAEQI+WPIH EVSRVTVRAKEAVEAAGG+VRRVYYNKLGFRALLKPEWF
Sbjct: 217 IKDGVRLMGRGAEQIQWPIHFEVSRVTVRAKEAVEAAGGSVRRVYYNKLGFRALLKPEWF 276

Query: 301 EKKGRLLPRAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDEDGGRAASNLST 349
           EKKGRLLP+AARPPPKQ+DKVDSIGRLPAPTKPIPF  E+E     AS+ ST
Sbjct: 277 EKKGRLLPKAARPPPKQKDKVDSIGRLPAPTKPIPFFTEEE----VASSSST 321

[Close]

BLAST of Lsi11G001070 vs. NCBI nr
Match: gi|657993764|ref|XP_008389179.1| (PREDICTED: 54S ribosomal protein L10, mitochondrial-like [Malus domestica])

HSP 1 Score: 422.2 bits (1084), Expect = 9.0e-115
Identity = 224/280 (80.00%), Postives = 240/280 (85.71%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSL--ASVHSKPPPAIVINQALSRPFLEF----QQNPSLDRSVGFPLSG 124
           MLRRRL  LLS+++  +S+ +KPP  +     +    L F      NPS     GF   G
Sbjct: 1   MLRRRLPSLLSTTIFTSSIRTKPPFTLPTPSPIPSQSLHFLPCLNPNPSFSNGKGFGFQG 60

Query: 125 NIFGFRAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGG 184
                RAYSLLSLNDLR KVPRKQKTRKGRGIGSGKGKTAGRGHKGQ+ARGSGKLGFEGG
Sbjct: 61  ----VRAYSLLSLNDLRGKVPRKQKTRKGRGIGSGKGKTAGRGHKGQKARGSGKLGFEGG 120

Query: 185 QTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIE 244
           QTPLRRRLPKRGF NPFSLTFQPVGLGKIA LINAGKIDSSELITMKTLKDTGAIGKQI+
Sbjct: 121 QTPLRRRLPKRGFNNPFSLTFQPVGLGKIATLINAGKIDSSELITMKTLKDTGAIGKQIK 180

Query: 245 DGVRLMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEK 304
           DGVRLMGRGAEQI+WPIHLEVSRVTVRAKEAVEAAGG+VRRVYYNKLGFRALLKPEWFEK
Sbjct: 181 DGVRLMGRGAEQIQWPIHLEVSRVTVRAKEAVEAAGGSVRRVYYNKLGFRALLKPEWFEK 240

Query: 305 KGRLLPRAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDED 339
           KGRLLP+AARPPPKQ+DKVDSIGRLPAPTKPIPFS ED++
Sbjct: 241 KGRLLPKAARPPPKQKDKVDSIGRLPAPTKPIPFSTEDKE 276

[Close]

BLAST of Lsi11G001070 vs. NCBI nr
Match: gi|694421823|ref|XP_009338744.1| (PREDICTED: 54S ribosomal protein L10, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 420.6 bits (1080), Expect = 2.6e-114
Identity = 222/280 (79.29%), Postives = 241/280 (86.07%), Query Frame = 1


Query: 65  MLRRRLCYLLSSSL--ASVHSKPPPAIVINQALSRPFLEF----QQNPSLDRSVGFPLSG 124
           MLRRRL  LLS+++  +S+ +KPP  +  +  +    L F      NPS +   GF   G
Sbjct: 1   MLRRRLPSLLSTTIFTSSIRTKPPLTLPTHSPIPSQSLHFLPCLNPNPSFNNDKGFGFQG 60

Query: 125 NIFGFRAYSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGG 184
                RAYSLLSLNDLR KVPRKQKTRKGRGIGSGKGKTAGRGHKGQ+ARGSGKLGFEGG
Sbjct: 61  ----VRAYSLLSLNDLRGKVPRKQKTRKGRGIGSGKGKTAGRGHKGQKARGSGKLGFEGG 120

Query: 185 QTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIE 244
           QTPLRRRLPKRGF NPFSLTFQPVGLGKIA LINAGKIDSSELITMKTLKDTGAIGKQI+
Sbjct: 121 QTPLRRRLPKRGFNNPFSLTFQPVGLGKIATLINAGKIDSSELITMKTLKDTGAIGKQIK 180

Query: 245 DGVRLMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEK 304
           DGVRLMGRGAEQI+WPIHLEVSRVTVRA+EAVEAAGG+VRRVYYNKLGFRALLKPEWFEK
Sbjct: 181 DGVRLMGRGAEQIQWPIHLEVSRVTVRAREAVEAAGGSVRRVYYNKLGFRALLKPEWFEK 240

Query: 305 KGRLLPRAARPPPKQRDKVDSIGRLPAPTKPIPFSVEDED 339
           KGRLLP+AARPPPKQ+DKVDSIGRLPAPTKPIPF  ED++
Sbjct: 241 KGRLLPKAARPPPKQKDKVDSIGRLPAPTKPIPFLTEDKE 276

The following BLAST results are available for this feature:

BLAST of Lsi11G001070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL15_RHOPB	1.7e-28	50.66	50S ribosomal protein L15 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplO ...	[more]
RL15_RHORT	2.9e-28	50.33	50S ribosomal protein L15 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1....	[more]
RL15_GLUDA	4.9e-28	50.66	50S ribosomal protein L15 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RL15_BRASO	4.9e-28	49.34	50S ribosomal protein L15 OS=Bradyrhizobium sp. (strain ORS278) GN=rplO PE=3 SV=...	[more]
RL15_XANP2	6.4e-28	50.99	50S ribosomal protein L15 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / ...	[more]

BLAST of Lsi11G001070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP79_CUCSA	4.0e-146	95.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G532450 PE=3 SV=1	[more]
M5VMS3_PRUPE	3.7e-115	78.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008724mg PE=3 SV=1	[more]
W9R8K8_9ROSA	1.9e-111	79.71	50S ribosomal protein L15 OS=Morus notabilis GN=L484_012191 PE=3 SV=1	[more]
A0A061E357_THECC	3.6e-110	77.22	Ribosomal protein L18e/L15 superfamily protein OS=Theobroma cacao GN=TCM_007684 ...	[more]
I1MJF2_SOYBN	5.2e-109	79.04	Uncharacterized protein OS=Glycine max GN=GLYMA_15G264500 PE=3 SV=1	[more]

BLAST of Lsi11G001070 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64670.1	2.3e-108	74.47	Ribosomal protein L18e/L15 superfamily protein	[more]
AT3G25920.1	2.4e-09	32.45	ribosomal protein L15	[more]

BLAST of Lsi11G001070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121261\|ref\|XP_008460571.1\|	2.0e-146	95.07	PREDICTED: 54S ribosomal protein L10, mitochondrial [Cucumis melo]	[more]
gi\|449450123\|ref\|XP_004142813.1\|	5.8e-146	95.42	PREDICTED: 54S ribosomal protein L10, mitochondrial [Cucumis sativus]	[more]
gi\|595797630\|ref\|XP_007201295.1\|	5.3e-115	78.08	hypothetical protein PRUPE_ppa008724mg [Prunus persica]	[more]
gi\|657993764\|ref\|XP_008389179.1\|	9.0e-115	80.00	PREDICTED: 54S ribosomal protein L10, mitochondrial-like [Malus domestica]	[more]
gi\|694421823\|ref\|XP_009338744.1\|	2.6e-114	79.29	PREDICTED: 54S ribosomal protein L10, mitochondrial [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR021131	Ribosomal_L18e/L15P
IPR005749	Ribosomal_L15_bac-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001070.1	Lsi11G001070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005749	Ribosomal protein L15, bacterial-type	PANTHER	PTHR12934	50S RIBOSOMAL PROTEIN L15	coord: 123..339 score: 4.4E
IPR005749	Ribosomal protein L15, bacterial-type	TIGRFAMs	TIGR01071	TIGR01071	coord: 131..277 score: 4.6
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 154..277 score: 5.6
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 139..277 score: 2.09
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 159..278 score: 2.8
None	No IPR available	PANTHER	PTHR12934:SF12	39S RIBOSOMAL PROTEIN L15, MITOCHONDRIAL	coord: 123..339 score: 4.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G001070	Csa5G532450	Cucumber (Chinese Long) v2	culsiB337
Lsi11G001070	CSPI05G18790	Wild cucumber (PI 183967)	cpilsiB339
Lsi11G001070	Cucsa.011740	Cucumber (Gy14) v1	cgylsiB317
Lsi11G001070	CmaCh04G018900	Cucurbita maxima (Rimu)	cmalsiB635
Lsi11G001070	CmoCh04G019940	Cucurbita moschata (Rifu)	cmolsiB623
Lsi11G001070	Cla001875	Watermelon (97103) v1	lsiwmB109
Lsi11G001070	MELO3C022914	Melon (DHL92) v3.5.1	lsimeB082
Lsi11G001070	MELO3C022914.2	Melon (DHL92) v3.6.1	lsimedB087
Lsi11G001070	Cla97C11G206400	Watermelon (97103) v2	lsiwmbB079
Lsi11G001070	Bhi07G000062	Wax gourd	lsiwgoB134
Lsi11G001070	Cp4.1LG01g17050	Cucurbita pepo (Zucchini)	cpelsiB321
Lsi11G001070	CsGy5G018320	Cucumber (Gy14) v2	cgyblsiB308
Lsi11G001070	Carg26169	Silver-seed gourd	carlsiB255
Lsi11G001070	CsaV3_5G027610	Cucumber (Chinese Long) v3	cuclsiB361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G001070	Wax gourd	lsiwgoB125
Lsi11G001070	Wax gourd	lsiwgoB133
Lsi11G001070	Cucumber (Gy14) v1	cgylsiB305
Lsi11G001070	Cucurbita pepo (Zucchini)	cpelsiB319
Lsi11G001070	Wild cucumber (PI 183967)	cpilsiB340
Lsi11G001070	Cucumber (Chinese Long) v2	culsiB338
Lsi11G001070	Watermelon (Charleston Gray)	lsiwcgB084
Lsi11G001070	Watermelon (97103) v1	lsiwmB114
Lsi11G001070	Cucumber (Gy14) v2	cgyblsiB309
Lsi11G001070	Cucumber (Chinese Long) v3	cuclsiB362