Lsi11G000950 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G000950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_1
Location	chr11 : 987314 .. 987745 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAAGCCGCCAAGAAGAAACTTAAATTCTGGTCCAAGAACAAGAAGCCAAAGAAAACCCACAATCACTACCATTTCCCTCCGCCGCCCTGCCATTGCTGCACTTGCAATTGCTCCTCCGCGACCCAGCCCTCAGCTCCACCACTTCCGCCATGGCTAGACGATCGGACCTTTCTGCCGCCTTCAACGGAATCGGAACAGCTGGACAGAGCCGAAATCACCGCGCCGCTTGTGGCCAGTCAGTCGTACCAGCAATACTTGGCGCCGGAGCCGGTGTACGGAGTTCCGATCATTGTGCAAACAGAAAGCAGAAGAGAGAAATGGAGAAGCTTCAGGGTTTCCGGATGCATTGGTGATTTGGGGATAAAGTTAATTGGATGCTTCTGCCCCTGTTTTCGCATTCCACAACCATACTACATACCAAAGTAA

mRNA sequence

ATGCTGAAAGCCGCCAAGAAGAAACTTAAATTCTGGTCCAAGAACAAGAAGCCAAAGAAAACCCACAATCACTACCATTTCCCTCCGCCGCCCTGCCATTGCTGCACTTGCAATTGCTCCTCCGCGACCCAGCCCTCAGCTCCACCACTTCCGCCATGGCTAGACGATCGGACCTTTCTGCCGCCTTCAACGGAATCGGAACAGCTGGACAGAGCCGAAATCACCGCGCCGCTTGTGGCCAGTCAGTCGTACCAGCAATACTTGGCGCCGGAGCCGGTGTACGGAGTTCCGATCATTGTGCAAACAGAAAGCAGAAGAGAGAAATGGAGAAGCTTCAGGGTTTCCGGATGCATTGGTGATTTGGGGATAAAGTTAATTGGATGCTTCTGCCCCTGTTTTCGCATTCCACAACCATACTACATACCAAAGTAA

Coding sequence (CDS)

ATGCTGAAAGCCGCCAAGAAGAAACTTAAATTCTGGTCCAAGAACAAGAAGCCAAAGAAAACCCACAATCACTACCATTTCCCTCCGCCGCCCTGCCATTGCTGCACTTGCAATTGCTCCTCCGCGACCCAGCCCTCAGCTCCACCACTTCCGCCATGGCTAGACGATCGGACCTTTCTGCCGCCTTCAACGGAATCGGAACAGCTGGACAGAGCCGAAATCACCGCGCCGCTTGTGGCCAGTCAGTCGTACCAGCAATACTTGGCGCCGGAGCCGGTGTACGGAGTTCCGATCATTGTGCAAACAGAAAGCAGAAGAGAGAAATGGAGAAGCTTCAGGGTTTCCGGATGCATTGGTGATTTGGGGATAAAGTTAATTGGATGCTTCTGCCCCTGTTTTCGCATTCCACAACCATACTACATACCAAAGTAA

Protein sequence

MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQPYYIPK

Homology

[Close]

BLAST of Lsi11G000950 vs. TrEMBL
Match: A0A0A0KJG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077760 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.5e-26
Identity = 88/163 (53.99%), Postives = 100/163 (61.35%), Query Frame = 1


Query: 1   MLKAAKKKLK-FWSK------NKKPKKTH-NHYHFPPPPCHCCTCNCSSAT------QPS 60
           MLKA KKKLK  WSK       KKP +T  N Y +      CC C+CSS+T      QPS
Sbjct: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQY------CCICHCSSSTHQHNQQQPS 83

Query: 61  APPLPPWLDDR-TFLPPSTES--EQLDRA-EITAPLVASQ-SYQQYLAPEPVYGVPIIVQ 120
           APPLP WL+D  TFLPPST+S  E  D A E+  PLVA+Q SYQQYL  EPVYGVPIIV+
Sbjct: 84  APPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVE 143

Query: 121 TES-RREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP 143
           TES R +KW+            IKL  C CPCF I Q  YY+P
Sbjct: 144 TESGRGQKWKRL----------IKLFECLCPCFGITQQLYYVP 170

[Close]

BLAST of Lsi11G000950 vs. TrEMBL
Match: B9N785_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s00910g PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-22
Identity = 71/158 (44.94%), Postives = 83/158 (52.53%), Query Frame = 1


Query: 1   MLKAAKKKLKFWSKNKKPKKT----HNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDD 60
           M+KAAKK  KFW + KK KKT      +YH PP  CHCC    ++ TQPSAPPLPPWL+ 
Sbjct: 1   MIKAAKKLKKFWPRKKKRKKTLQYHEPYYHHPPSSCHCCCSYPTAPTQPSAPPLPPWLEP 60

Query: 61  RTFLPPSTESEQLDRAEITAP---LVASQ--------------SYQQYLAPEPVYGVPII 120
                  +    L   E+  P    V SQ              SYQQYL P PVYGVP  
Sbjct: 61  ELTYEAVSAPGLLSLPELAHPSHIQVPSQEIVMETTPIYPTLPSYQQYLVPNPVYGVP-- 120

Query: 121 VQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQ 138
           V+ + RREK   F   GC+      LI CFCPCFRI +
Sbjct: 121 VEQKPRREKSTGF--FGCVVTFCANLIRCFCPCFRIQE 154

[Close]

BLAST of Lsi11G000950 vs. TrEMBL
Match: B9SPB8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0496640 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 72/162 (44.44%), Postives = 84/162 (51.85%), Query Frame = 1


Query: 1   MLKAAKKKLKFWSKNKKPKKTHN--HYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRT 60
           M+KAAKK  K W + KK KKT+   +Y  PPP CHCC C+ S+  QPSAPPLPPWL+   
Sbjct: 1   MIKAAKKLRKLWPRKKKRKKTYQEPYYFLPPPSCHCC-CSYSTPVQPSAPPLPPWLESAQ 60

Query: 61  FLPP--STESEQL--------------------DRAEITAPLVASQS---YQQYLAPEPV 120
                 STE +QL                    D   I   L  + +   YQQY  P PV
Sbjct: 61  THEAISSTEVQQLPEEGYQSQFQFPSQEIVVETDTNAIYPTLPNTDTPLTYQQYAVPNPV 120

Query: 121 YGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI 136
           YGVP++ QT  RRE  RS    GC    G  LI CFCPCF I
Sbjct: 121 YGVPVVEQT-PRRE--RSAGFFGCFVKFGANLIRCFCPCFHI 158

[Close]

BLAST of Lsi11G000950 vs. TrEMBL
Match: M5XIB2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026463mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-20
Identity = 74/184 (40.22%), Postives = 97/184 (52.72%), Query Frame = 1


Query: 1   MLKAAKKKLKFWSKNKKPKKTHNH--YHFPPPPC-----------HCCTCNCSS-ATQPS 60
           M+KA KK LKFWS+ K+ KKT +H  Y+ PPPP            HCC+C+ S+ +TQPS
Sbjct: 1   MIKAVKK-LKFWSRKKRKKKTLHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 60

Query: 61  APPLPPWLD----DRTFLPPSTESE-----QLDRAE---------------ITAPLVA-- 120
           APPLPPWLD        L P  +       Q D  +                ++PL    
Sbjct: 61  APPLPPWLDAEYTHEALLAPQVQPAPEFGYQADPRQQEPTMKTNADSGTTSTSSPLYLYP 120

Query: 121 SQSYQQYLAPEPVYGVPII---VQTESR------REKWRSFRVSGCIGDLGIKLIGCFCP 136
           + SYQQY+ P+PVYGVPI     QT+++      RE+  +  V GC+ D GI+   CFCP
Sbjct: 121 TSSYQQYMVPDPVYGVPIAQTQTQTQTQTPRATTRERSAAGGVFGCVVDFGIRFFRCFCP 180

[Close]

BLAST of Lsi11G000950 vs. TrEMBL
Match: A0A067LEJ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00306 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19
Identity = 65/162 (40.12%), Postives = 83/162 (51.23%), Query Frame = 1


Query: 1   MLKAAKKKLKFWSKNKKPKKTHN---HYHFPPPPCHCCTCNCSSATQPSAPPLPPWLD-D 60
           M+KA KK  KFW + K+ K+T++   +Y  PPPP HCC  + ++  QPSAPPLPPWLD D
Sbjct: 1   MIKAVKKLKKFWPRKKRRKRTYHQEPYYQPPPPPYHCCCSHSTAPVQPSAPPLPPWLDFD 60

Query: 61  RT-----------FLPPS---TESEQLDRAEI---------TAPLVASQSYQQYLAPEPV 120
           +T            LPP        Q    EI         T P+    +YQQY+ P PV
Sbjct: 61  QTTQENISAPGAHHLPPDLVYQSQSQFPSQEIVVETNPICPTLPVETPLTYQQYIVPNPV 120

Query: 121 YGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI 136
           YGVP++        K RS    GCI   G+ L+ C  PCF I
Sbjct: 121 YGVPVV----GTPRKERSAGFFGCIISFGVNLVRCLFPCFLI 158

[Close]

BLAST of Lsi11G000950 vs. NCBI nr
Match: gi|659121311|ref|XP_008460596.1| (PREDICTED: uncharacterized protein LOC103499377 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 6.5e-27
Identity = 86/155 (55.48%), Postives = 101/155 (65.16%), Query Frame = 1


Query: 1   MLKAAKKKLK-FWSK--NKKPKKTHNHYHFPPPPCHCCTCNCSSAT----QPSAPPLPPW 60
           MLKA KKKLK  WSK   KKP KT  + +      +CC+C+CSS++    QPSAPPLPPW
Sbjct: 1   MLKATKKKLKGLWSKMKKKKPNKTQTNCYQ-----YCCSCHCSSSSHLHHQPSAPPLPPW 60

Query: 61  L-DDRTFLPPSTES--EQLDRAEITAPLVASQ-SYQQYLAPEPVYGVPIIVQTESRR-EK 120
           L +D TFLPP T+S  E  DRA+    +V +Q SYQQYL  EPVYGVPIIV+TESRR +K
Sbjct: 61  LNEDPTFLPPPTQSQFEHPDRAD---GMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQK 120

Query: 121 WRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP 143
           W+            IKL  CFCPCF I Q  YYIP
Sbjct: 121 WKRL----------IKLFDCFCPCFGITQQLYYIP 137

[Close]

BLAST of Lsi11G000950 vs. NCBI nr
Match: gi|700194531|gb|KGN49708.1| (hypothetical protein Csa_5G077760 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 88/163 (53.99%), Postives = 100/163 (61.35%), Query Frame = 1


Query: 1   MLKAAKKKLK-FWSK------NKKPKKTH-NHYHFPPPPCHCCTCNCSSAT------QPS 60
           MLKA KKKLK  WSK       KKP +T  N Y +      CC C+CSS+T      QPS
Sbjct: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQY------CCICHCSSSTHQHNQQQPS 83

Query: 61  APPLPPWLDDR-TFLPPSTES--EQLDRA-EITAPLVASQ-SYQQYLAPEPVYGVPIIVQ 120
           APPLP WL+D  TFLPPST+S  E  D A E+  PLVA+Q SYQQYL  EPVYGVPIIV+
Sbjct: 84  APPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVE 143

Query: 121 TES-RREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP 143
           TES R +KW+            IKL  C CPCF I Q  YY+P
Sbjct: 144 TESGRGQKWKRL----------IKLFECLCPCFGITQQLYYVP 170

[Close]

BLAST of Lsi11G000950 vs. NCBI nr
Match: gi|645223475|ref|XP_008218648.1| (PREDICTED: homeobox protein Hox-C4 [Prunus mume])

HSP 1 Score: 115.2 bits (287), Expect = 9.7e-23
Identity = 74/171 (43.27%), Postives = 95/171 (55.56%), Query Frame = 1


Query: 1   MLKAAKKKLKFWSKNKKPKKTHNH--YHFPPPPC-----------HCCTCNCSS-ATQPS 60
           M+KA KK LKFWS+ K+ KKTH+H  Y+ PPPP            HCC+C+ S+ +TQPS
Sbjct: 1   MIKAVKK-LKFWSRKKRKKKTHHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 60

Query: 61  APPLPPWLD-----DRTFLP---PSTE-SEQLDRAE------------ITAPLVASQSYQ 120
           APPLPPWLD     +  F P   P+ E   Q D  +             T+    S SYQ
Sbjct: 61  APPLPPWLDAEYTHEALFAPLVQPAPEFGYQADPRQQEPTMKTNAGSGTTSIYPTSSSYQ 120

Query: 121 QYLAPEPVYGVPIIVQTE-SRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI 136
           QY+ P+PVYGVP+   T  +  E+  +  V GC+ D GI+   CFCPCF I
Sbjct: 121 QYMVPDPVYGVPVAQTTRATTTERSAAAGVFGCVVDFGIRFFRCFCPCFHI 170

[Close]

BLAST of Lsi11G000950 vs. NCBI nr
Match: gi|566160169|ref|XP_006385190.1| (hypothetical protein POPTR_0003s00910g [Populus trichocarpa])

HSP 1 Score: 112.8 bits (281), Expect = 4.8e-22
Identity = 71/158 (44.94%), Postives = 83/158 (52.53%), Query Frame = 1


Query: 1   MLKAAKKKLKFWSKNKKPKKT----HNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDD 60
           M+KAAKK  KFW + KK KKT      +YH PP  CHCC    ++ TQPSAPPLPPWL+ 
Sbjct: 1   MIKAAKKLKKFWPRKKKRKKTLQYHEPYYHHPPSSCHCCCSYPTAPTQPSAPPLPPWLEP 60

Query: 61  RTFLPPSTESEQLDRAEITAP---LVASQ--------------SYQQYLAPEPVYGVPII 120
                  +    L   E+  P    V SQ              SYQQYL P PVYGVP  
Sbjct: 61  ELTYEAVSAPGLLSLPELAHPSHIQVPSQEIVMETTPIYPTLPSYQQYLVPNPVYGVP-- 120

Query: 121 VQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQ 138
           V+ + RREK   F   GC+      LI CFCPCFRI +
Sbjct: 121 VEQKPRREKSTGF--FGCVVTFCANLIRCFCPCFRIQE 154

[Close]

BLAST of Lsi11G000950 vs. NCBI nr
Match: gi|255573836|ref|XP_002527837.1| (PREDICTED: uncharacterized protein LOC8262569 [Ricinus communis])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 72/162 (44.44%), Postives = 84/162 (51.85%), Query Frame = 1


Query: 1   MLKAAKKKLKFWSKNKKPKKTHN--HYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRT 60
           M+KAAKK  K W + KK KKT+   +Y  PPP CHCC C+ S+  QPSAPPLPPWL+   
Sbjct: 1   MIKAAKKLRKLWPRKKKRKKTYQEPYYFLPPPSCHCC-CSYSTPVQPSAPPLPPWLESAQ 60

Query: 61  FLPP--STESEQL--------------------DRAEITAPLVASQS---YQQYLAPEPV 120
                 STE +QL                    D   I   L  + +   YQQY  P PV
Sbjct: 61  THEAISSTEVQQLPEEGYQSQFQFPSQEIVVETDTNAIYPTLPNTDTPLTYQQYAVPNPV 120

Query: 121 YGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI 136
           YGVP++ QT  RRE  RS    GC    G  LI CFCPCF I
Sbjct: 121 YGVPVVEQT-PRRE--RSAGFFGCFVKFGANLIRCFCPCFHI 158

The following BLAST results are available for this feature:

BLAST of Lsi11G000950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G000950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJG0_CUCSA	6.5e-26	53.99	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077760 PE=4 SV=1	[more]
B9N785_POPTR	3.4e-22	44.94	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s00910g PE=4 SV=1	[more]
B9SPB8_RICCO	1.1e-20	44.44	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0496640 PE=4 SV=1	[more]
M5XIB2_PRUPE	2.4e-20	40.22	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026463mg PE=4 S...	[more]
A0A067LEJ1_JATCU	1.6e-19	40.12	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00306 PE=4 SV=1	[more]

BLAST of Lsi11G000950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi11G000950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121311\|ref\|XP_008460596.1\|	6.5e-27	55.48	PREDICTED: uncharacterized protein LOC103499377 [Cucumis melo]	[more]
gi\|700194531\|gb\|KGN49708.1\|	9.4e-26	53.99	hypothetical protein Csa_5G077760 [Cucumis sativus]	[more]
gi\|645223475\|ref\|XP_008218648.1\|	9.7e-23	43.27	PREDICTED: homeobox protein Hox-C4 [Prunus mume]	[more]
gi\|566160169\|ref\|XP_006385190.1\|	4.8e-22	44.94	hypothetical protein POPTR_0003s00910g [Populus trichocarpa]	[more]
gi\|255573836\|ref\|XP_002527837.1\|	1.5e-20	44.44	PREDICTED: uncharacterized protein LOC8262569 [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G000950.1	Lsi11G000950.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G000950	Csa5G077760	Cucumber (Chinese Long) v2	culsiB338
Lsi11G000950	CSPI05G01710	Wild cucumber (PI 183967)	cpilsiB340
Lsi11G000950	Cucsa.183400	Cucumber (Gy14) v1	cgylsiB305
Lsi11G000950	MELO3C022933	Melon (DHL92) v3.5.1	lsimeB082
Lsi11G000950	MELO3C022933.2	Melon (DHL92) v3.6.1	lsimedB087
Lsi11G000950	Cla97C11G206600	Watermelon (97103) v2	lsiwmbB076
Lsi11G000950	Cp4.1LG01g17150	Cucurbita pepo (Zucchini)	cpelsiB321
Lsi11G000950	CsGy5G011760	Cucumber (Gy14) v2	cgyblsiB309
Lsi11G000950	CsaV3_5G015690	Cucumber (Chinese Long) v3	cuclsiB362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G000950	Cucurbita maxima (Rimu)	cmalsiB635
Lsi11G000950	Cucurbita moschata (Rifu)	cmolsiB623
Lsi11G000950	Cucurbita pepo (Zucchini)	cpelsiB319
Lsi11G000950	Watermelon (Charleston Gray)	lsiwcgB080
Lsi11G000950	Watermelon (Charleston Gray)	lsiwcgB084
Lsi11G000950	Watermelon (97103) v1	lsiwmB114
Lsi11G000950	Watermelon (97103) v1	lsiwmB109
Lsi11G000950	Watermelon (97103) v1	lsiwmB118
Lsi11G000950	Silver-seed gourd	carlsiB255
Lsi11G000950	Watermelon (97103) v2	lsiwmbB079
Lsi11G000950	Wax gourd	lsiwgoB125
Lsi11G000950	Wax gourd	lsiwgoB133
Lsi11G000950	Wax gourd	lsiwgoB134