Cucsa.183400 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.183400
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold01261 : 276116 .. 276457 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCCTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACGTACCATAG

mRNA sequence

TACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCCTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACGTACCATAG

Coding sequence (CDS)

TACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCCTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACGTACCATAG

Protein sequence

YCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP*

Homology

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BLAST of Cucsa.183400 vs. TrEMBL
Match: A0A0A0KJG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077760 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 6.3e-64
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   YCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQ 60
           YCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQ
Sbjct: 58  YCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQ 117

Query: 61  WSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 114
           WSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP
Sbjct: 118 WSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 170

[Close]

BLAST of Cucsa.183400 vs. TrEMBL
Match: B9SPB8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0496640 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 48/131 (36.64%), Postives = 58/131 (44.27%), Query Frame = 1


Query: 3   CICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPST-----------QSQFEHP----- 62
           C C CS ST      QPSAPPLP WL  A T    S+           QSQF+ P     
Sbjct: 34  CHCCCSYST----PVQPSAPPLPPWLESAQTHEAISSTEVQQLPEEGYQSQFQFPSQEIV 93

Query: 63  -DTADEMVEPLVANQ---WSYQQYLVAEPVYGVPIIVETESGR------GQKWKRLIKLF 108
            +T    + P + N     +YQQY V  PVYGVP++ +T          G   K    L 
Sbjct: 94  VETDTNAIYPTLPNTDTPLTYQQYAVPNPVYGVPVVEQTPRRERSAGFFGCFVKFGANLI 153

[Close]

BLAST of Cucsa.183400 vs. TrEMBL
Match: A0A0D2TNG0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G114500 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 1


Query: 3   CICHCSSSTHQHNQQ-----QPSAPPLPLWLNDAPT---FLPPSTQS-----QFEHPDTA 62
           C CHCS ST  H  Q     QPSAPPLP W     T   FL           +F HP   
Sbjct: 28  CFCHCSHSTSSHYYQCNYPLQPSAPPLPPWFQAELTQDEFLTSEQAEAEPFPEFSHPTDL 87

Query: 63  DEMVE--PLV--ANQWSYQQYLVAEPVYGVPIIVETESGRGQKWKRL--------IKLFE 108
            + +E  P++  A   SYQQY+V+ PVYG P++ +T  GR ++            ++L  
Sbjct: 88  VQDIESDPMIPAAAFPSYQQYMVSNPVYG-PVVQQT--GRRERSGGYFGCIIDIGLRLIR 147

[Close]

BLAST of Cucsa.183400 vs. TrEMBL
Match: I1LT89_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G164000 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = 1


Query: 1   YCCICHCSSSTHQHNQQQPSAPPLP------LWLNDAPTFLPPSTQSQFEHPDTADEMVE 60
           YCC C+CSSS       QPSAPPLP         ++  TFLP  T      P+   + + 
Sbjct: 32  YCCSCYCSSSI------QPSAPPLPSSSCLDFEYSNYGTFLP--TPEPEPEPEPQPQEIA 91

Query: 61  PLVANQWSYQQYL--VAEPVYGVPIIV----ETESGRGQ---KWKRLIKLFECLCPCFGI 108
            L +   SYQQY+  V+EPVYG+P+ V     TE   GQ    +     LF CL PCF I
Sbjct: 92  SLNS---SYQQYMVSVSEPVYGIPVPVIHASRTERSAGQFGCLFSFGSYLFRCLFPCFYI 142

[Close]

BLAST of Cucsa.183400 vs. TrEMBL
Match: A0A061GFE3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027112 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-07
Identity = 44/132 (33.33%), Postives = 60/132 (45.45%), Query Frame = 1


Query: 5   CHCSSSTHQHNQQQPSAPPLPLWLNDAPT------------FLPP--STQSQFEHPDTAD 64
           CHC  S       QPSAPPLP WL   PT            F  P  S  + F++P   D
Sbjct: 35  CHCCYSCAS---TQPSAPPLPSWLQAEPTQDAIHTADHAEPFPVPELSYPTLFQYPTQED 94

Query: 65  EMVEPL-----VANQWSYQQYLVAEPVYGVPIIVETESGRGQKWKRL--------IKLFE 110
            + E       +    SYQQYLV  PVYG+P++   ++GR ++            + L  
Sbjct: 95  TVSETESHRSPICPAPSYQQYLVPNPVYGLPVV--QQAGRRERSAGFLGCVIDFGVDLIR 154

[Close]

BLAST of Cucsa.183400 vs. NCBI nr
Match: gi|700194531|gb|KGN49708.1| (hypothetical protein Csa_5G077760 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 9.0e-64
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   YCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQ 60
           YCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQ
Sbjct: 58  YCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQ 117

Query: 61  WSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 114
           WSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP
Sbjct: 118 WSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 170

[Close]

BLAST of Cucsa.183400 vs. NCBI nr
Match: gi|659121311|ref|XP_008460596.1| (PREDICTED: uncharacterized protein LOC103499377 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 7.7e-47
Identity = 90/113 (79.65%), Postives = 96/113 (84.96%), Query Frame = 1


Query: 1   YCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQ 60
           YCC CHCSSS+H H+Q  PSAPPLP WLN+ PTFLPP TQSQFEHPD AD M    V NQ
Sbjct: 31  YCCSCHCSSSSHLHHQ--PSAPPLPPWLNEDPTFLPPPTQSQFEHPDRADGM----VTNQ 90

Query: 61  WSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 114
           WSYQQYLVAEPVYGVPIIV+TES R QKWKRLIKLF+C CPCFGITQQLYY+P
Sbjct: 91  WSYQQYLVAEPVYGVPIIVKTESRRDQKWKRLIKLFDCFCPCFGITQQLYYIP 137

[Close]

BLAST of Cucsa.183400 vs. NCBI nr
Match: gi|255573836|ref|XP_002527837.1| (PREDICTED: uncharacterized protein LOC8262569 [Ricinus communis])

HSP 1 Score: 65.1 bits (157), Expect = 9.2e-08
Identity = 48/131 (36.64%), Postives = 58/131 (44.27%), Query Frame = 1


Query: 3   CICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPST-----------QSQFEHP----- 62
           C C CS ST      QPSAPPLP WL  A T    S+           QSQF+ P     
Sbjct: 34  CHCCCSYST----PVQPSAPPLPPWLESAQTHEAISSTEVQQLPEEGYQSQFQFPSQEIV 93

Query: 63  -DTADEMVEPLVANQ---WSYQQYLVAEPVYGVPIIVETESGR------GQKWKRLIKLF 108
            +T    + P + N     +YQQY V  PVYGVP++ +T          G   K    L 
Sbjct: 94  VETDTNAIYPTLPNTDTPLTYQQYAVPNPVYGVPVVEQTPRRERSAGFFGCFVKFGANLI 153

[Close]

BLAST of Cucsa.183400 vs. NCBI nr
Match: gi|823224874|ref|XP_012445219.1| (PREDICTED: uncharacterized protein LOC105769255 [Gossypium raimondii])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 1


Query: 3   CICHCSSSTHQHNQQ-----QPSAPPLPLWLNDAPT---FLPPSTQS-----QFEHPDTA 62
           C CHCS ST  H  Q     QPSAPPLP W     T   FL           +F HP   
Sbjct: 28  CFCHCSHSTSSHYYQCNYPLQPSAPPLPPWFQAELTQDEFLTSEQAEAEPFPEFSHPTDL 87

Query: 63  DEMVE--PLV--ANQWSYQQYLVAEPVYGVPIIVETESGRGQKWKRL--------IKLFE 108
            + +E  P++  A   SYQQY+V+ PVYG P++ +T  GR ++            ++L  
Sbjct: 88  VQDIESDPMIPAAAFPSYQQYMVSNPVYG-PVVQQT--GRRERSGGYFGCIIDIGLRLIR 147

[Close]

BLAST of Cucsa.183400 vs. NCBI nr
Match: gi|947077425|gb|KRH26265.1| (hypothetical protein GLYMA_12G164000 [Glycine max])

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = 1


Query: 1   YCCICHCSSSTHQHNQQQPSAPPLP------LWLNDAPTFLPPSTQSQFEHPDTADEMVE 60
           YCC C+CSSS       QPSAPPLP         ++  TFLP  T      P+   + + 
Sbjct: 32  YCCSCYCSSSI------QPSAPPLPSSSCLDFEYSNYGTFLP--TPEPEPEPEPQPQEIA 91

Query: 61  PLVANQWSYQQYL--VAEPVYGVPIIV----ETESGRGQ---KWKRLIKLFECLCPCFGI 108
            L +   SYQQY+  V+EPVYG+P+ V     TE   GQ    +     LF CL PCF I
Sbjct: 92  SLNS---SYQQYMVSVSEPVYGIPVPVIHASRTERSAGQFGCLFSFGSYLFRCLFPCFYI 142

The following BLAST results are available for this feature:

BLAST of Cucsa.183400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJG0_CUCSA	6.3e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077760 PE=4 SV=1	[more]
B9SPB8_RICCO	6.4e-08	36.64	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0496640 PE=4 SV=1	[more]
A0A0D2TNG0_GOSRA	1.1e-07	36.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G114500 PE=4 SV=1	[more]
I1LT89_SOYBN	1.9e-07	40.16	Uncharacterized protein OS=Glycine max GN=GLYMA_12G164000 PE=4 SV=1	[more]
A0A061GFE3_THECC	5.4e-07	33.33	Uncharacterized protein OS=Theobroma cacao GN=TCM_027112 PE=4 SV=1	[more]

BLAST of Cucsa.183400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194531\|gb\|KGN49708.1\|	9.0e-64	100.00	hypothetical protein Csa_5G077760 [Cucumis sativus]	[more]
gi\|659121311\|ref\|XP_008460596.1\|	7.7e-47	79.65	PREDICTED: uncharacterized protein LOC103499377 [Cucumis melo]	[more]
gi\|255573836\|ref\|XP_002527837.1\|	9.2e-08	36.64	PREDICTED: uncharacterized protein LOC8262569 [Ricinus communis]	[more]
gi\|823224874\|ref\|XP_012445219.1\|	1.6e-07	36.15	PREDICTED: uncharacterized protein LOC105769255 [Gossypium raimondii]	[more]
gi\|947077425\|gb\|KRH26265.1\|	2.7e-07	40.16	hypothetical protein GLYMA_12G164000 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.183400.1	Cucsa.183400.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.183400	Csa5G077760	Cucumber (Chinese Long) v2	cgycuB280
Cucsa.183400	MELO3C022933	Melon (DHL92) v3.5.1	cgymeB330
Cucsa.183400	CSPI05G01710	Wild cucumber (PI 183967)	cgycpiB290
Cucsa.183400	Lsi11G000950	Bottle gourd (USVL1VR-Ls)	cgylsiB305
Cucsa.183400	Cp4.1LG01g17150	Cucurbita pepo (Zucchini)	cgycpeB0502
Cucsa.183400	MELO3C022933.2	Melon (DHL92) v3.6.1	cgymedB325
Cucsa.183400	CsaV3_5G015690	Cucumber (Chinese Long) v3	cgycucB295
Cucsa.183400	Cla97C11G206600	Watermelon (97103) v2	cgywmbB330

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.183400	Cucurbita moschata (Rifu)	cgycmoB0522