CSPI05G01710 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G01710
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 2342130 .. 2342912 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTTCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAATACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCTTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAGTAATTTCTACTAATGTGTTTTGTTTGTTTGTGATTGTTATATTTAGAGGTGAACTTCTGGATTCCATGAAGTTACCGAAACAAACTACAAATATACACACAAGTATGAACGATTCTTTTGTGGGTGAGAGAGTCGGTTTACATTTCACGTTTGTAGAAAAGATATTGAAGAAATCCAAACAAGAAGTATTTTTAAATTTGTTATATGATCACTATTCATTAGGCAATCCAAACAAGAATAAAGGATACAACTCCTTTTGATTTCCCCCCC

mRNA sequence

ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTTCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAATACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCTTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAG

Coding sequence (CDS)

ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTTCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAATACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCTTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAG

Homology

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BLAST of CSPI05G01710 vs. TrEMBL
Match: A0A0A0KJG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077760 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 5.7e-93
Identity = 164/170 (96.47%), Postives = 165/170 (97.06%), Query Frame = 1


Query: 1   MNEWNSFPQFDVLLSPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
           MNEWNSF QFDVLL PQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC
Sbjct: 1   MNEWNSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60

Query: 61  ICHCSSSTHQHQQQQPSAPPLPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY 120
           ICHCSSSTHQH QQQPSAPPLP WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY
Sbjct: 61  ICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY 120

Query: 121 QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECFCPCFGITQQLYYIP 171
           QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFEC CPCFGITQQLYY+P
Sbjct: 121 QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 170

[Close]

BLAST of CSPI05G01710 vs. TrEMBL
Match: B9SPB8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0496640 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-11
Identity = 63/171 (36.84%), Postives = 78/171 (45.61%), Query Frame = 1


Query: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYC----CICHCSSSTHQHQQQQPSAP 83
           M+KA KK L+ LW + KK+ K      T    Y +     C C CS ST      QPSAP
Sbjct: 1   MIKAAKK-LRKLWPRKKKRKK------TYQEPYYFLPPPSCHCCCSYST----PVQPSAP 60

Query: 84  PLPPWLNDAPTFLPPST-----------QSQFEHP------DTADEMVEPLVAN---QWS 143
           PLPPWL  A T    S+           QSQF+ P      +T    + P + N     +
Sbjct: 61  PLPPWLESAQTHEAISSTEVQQLPEEGYQSQFQFPSQEIVVETDTNAIYPTLPNTDTPLT 120

Query: 144 YQQYLVAEPVYGVPIIVETESGR------GQKWKRLIKLFECFCPCFGITQ 165
           YQQY V  PVYGVP++ +T          G   K    L  CFCPCF I +
Sbjct: 121 YQQYAVPNPVYGVPVVEQTPRRERSAGFFGCFVKFGANLIRCFCPCFHIRE 160

[Close]

BLAST of CSPI05G01710 vs. TrEMBL
Match: B9N785_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s00910g PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 56/159 (35.22%), Postives = 73/159 (45.91%), Query Frame = 1


Query: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQPSAPPLPP 83
           M+KA KK LK  W + KK+ K  + +E   +     C C CS  T      QPSAPPLPP
Sbjct: 1   MIKAAKK-LKKFWPRKKKRKKTLQYHEPYYHHPPSSCHCCCSYPT---APTQPSAPPLPP 60

Query: 84  WLNDAPTFLPPSTQSQFEHPDTA---------DEMV---EPLVANQWSYQQYLVAEPVYG 143
           WL    T+   S       P+ A          E+V    P+     SYQQYLV  PVYG
Sbjct: 61  WLEPELTYEAVSAPGLLSLPELAHPSHIQVPSQEIVMETTPIYPTLPSYQQYLVPNPVYG 120

Query: 144 VPIIVETESGRGQKWKRLI-----KLFECFCPCFGITQQ 166
           VP+  +    +   +   +      L  CFCPCF I ++
Sbjct: 121 VPVEQKPRREKSTGFFGCVVTFCANLIRCFCPCFRIQEK 155

[Close]

BLAST of CSPI05G01710 vs. TrEMBL
Match: A0A0D2TNG0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G114500 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 62/166 (37.35%), Postives = 80/166 (48.19%), Query Frame = 1


Query: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQ-----QPSA 83
           M KA KK LK  WS+ K+K K   P  +        C CHCS ST  H  Q     QPSA
Sbjct: 1   MFKAVKK-LK-FWSRKKRKRKSLAPQPSH-------CFCHCSHSTSSHYYQCNYPLQPSA 60

Query: 84  PPLPPWLNDAPT---FLPPSTQS-----QFEHPDTADEMVE--PLV--ANQWSYQQYLVA 143
           PPLPPW     T   FL           +F HP    + +E  P++  A   SYQQY+V+
Sbjct: 61  PPLPPWFQAELTQDEFLTSEQAEAEPFPEFSHPTDLVQDIESDPMIPAAAFPSYQQYMVS 120

Query: 144 EPVYGVPIIVETESGRGQKWKRL--------IKLFECFCPCFGITQ 165
            PVYG P++ +T  GR ++            ++L  CFCPC  I +
Sbjct: 121 NPVYG-PVVQQT--GRRERSGGYFGCIIDIGLRLIRCFCPCVHIRE 154

[Close]

BLAST of CSPI05G01710 vs. TrEMBL
Match: V4UZ32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002734mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09
Identity = 59/164 (35.98%), Postives = 79/164 (48.17%), Query Frame = 1


Query: 24  MLKATKKKLKGLWSKMKKKNKKK-------KPNETQTNSYQYCCICHCSSSTHQHQQQQP 83
           M+KA KK LK  WS+ K+K K          P       +QY C   C +S+    Q QP
Sbjct: 3   MIKAMKK-LK-FWSRKKRKKKHNYEPYTYYHPPAPAPTYHQYYC---CPNSSAPQPQPQP 62

Query: 84  SAPPLPPWLN-DAPTFL--PPSTQSQFEHPDTADEMVEPLVA--------NQWSYQQYLV 143
           SAPPLPPWL+ + P  L    + +SQ+   +   E    L A        +  SYQQY+V
Sbjct: 63  SAPPLPPWLDYNQPHDLAFASAAESQYSSHEIVVETSSVLSAPALPSDSGSSCSYQQYMV 122

Query: 144 AEPVYGVPIIVETESGR-----GQKWKRLIKLFECFCPCFGITQ 165
             PVYG+P++  T S +     G  +     L  CFCPCF I +
Sbjct: 123 PNPVYGLPVVKATRSEKSAGIFGCVFGFGANLIRCFCPCFRIRE 161

[Close]

BLAST of CSPI05G01710 vs. NCBI nr
Match: gi|700194531|gb|KGN49708.1| (hypothetical protein Csa_5G077760 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 8.1e-93
Identity = 164/170 (96.47%), Postives = 165/170 (97.06%), Query Frame = 1


Query: 1   MNEWNSFPQFDVLLSPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
           MNEWNSF QFDVLL PQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC
Sbjct: 1   MNEWNSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60

Query: 61  ICHCSSSTHQHQQQQPSAPPLPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY 120
           ICHCSSSTHQH QQQPSAPPLP WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY
Sbjct: 61  ICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY 120

Query: 121 QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECFCPCFGITQQLYYIP 171
           QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFEC CPCFGITQQLYY+P
Sbjct: 121 QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 170

[Close]

BLAST of CSPI05G01710 vs. NCBI nr
Match: gi|659121311|ref|XP_008460596.1| (PREDICTED: uncharacterized protein LOC103499377 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 7.4e-62
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 1


Query: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQPSAPPLPP 83
           MLKATKKKLKGLWSKMKKK    KPN+TQTN YQYCC CHCSSS+H H Q  PSAPPLPP
Sbjct: 1   MLKATKKKLKGLWSKMKKK----KPNKTQTNCYQYCCSCHCSSSSHLHHQ--PSAPPLPP 60

Query: 84  WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRG 143
           WLN+ PTFLPP TQSQFEHPD AD M    V NQWSYQQYLVAEPVYGVPIIV+TES R 
Sbjct: 61  WLNEDPTFLPPPTQSQFEHPDRADGM----VTNQWSYQQYLVAEPVYGVPIIVKTESRRD 120

Query: 144 QKWKRLIKLFECFCPCFGITQQLYYIP 171
           QKWKRLIKLF+CFCPCFGITQQLYYIP
Sbjct: 121 QKWKRLIKLFDCFCPCFGITQQLYYIP 137

[Close]

BLAST of CSPI05G01710 vs. NCBI nr
Match: gi|255573836|ref|XP_002527837.1| (PREDICTED: uncharacterized protein LOC8262569 [Ricinus communis])

HSP 1 Score: 76.3 bits (186), Expect = 6.0e-11
Identity = 63/171 (36.84%), Postives = 78/171 (45.61%), Query Frame = 1


Query: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYC----CICHCSSSTHQHQQQQPSAP 83
           M+KA KK L+ LW + KK+ K      T    Y +     C C CS ST      QPSAP
Sbjct: 1   MIKAAKK-LRKLWPRKKKRKK------TYQEPYYFLPPPSCHCCCSYST----PVQPSAP 60

Query: 84  PLPPWLNDAPTFLPPST-----------QSQFEHP------DTADEMVEPLVAN---QWS 143
           PLPPWL  A T    S+           QSQF+ P      +T    + P + N     +
Sbjct: 61  PLPPWLESAQTHEAISSTEVQQLPEEGYQSQFQFPSQEIVVETDTNAIYPTLPNTDTPLT 120

Query: 144 YQQYLVAEPVYGVPIIVETESGR------GQKWKRLIKLFECFCPCFGITQ 165
           YQQY V  PVYGVP++ +T          G   K    L  CFCPCF I +
Sbjct: 121 YQQYAVPNPVYGVPVVEQTPRRERSAGFFGCFVKFGANLIRCFCPCFHIRE 160

[Close]

BLAST of CSPI05G01710 vs. NCBI nr
Match: gi|823224874|ref|XP_012445219.1| (PREDICTED: uncharacterized protein LOC105769255 [Gossypium raimondii])

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-10
Identity = 62/166 (37.35%), Postives = 80/166 (48.19%), Query Frame = 1


Query: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQ-----QPSA 83
           M KA KK LK  WS+ K+K K   P  +        C CHCS ST  H  Q     QPSA
Sbjct: 1   MFKAVKK-LK-FWSRKKRKRKSLAPQPSH-------CFCHCSHSTSSHYYQCNYPLQPSA 60

Query: 84  PPLPPWLNDAPT---FLPPSTQS-----QFEHPDTADEMVE--PLV--ANQWSYQQYLVA 143
           PPLPPW     T   FL           +F HP    + +E  P++  A   SYQQY+V+
Sbjct: 61  PPLPPWFQAELTQDEFLTSEQAEAEPFPEFSHPTDLVQDIESDPMIPAAAFPSYQQYMVS 120

Query: 144 EPVYGVPIIVETESGRGQKWKRL--------IKLFECFCPCFGITQ 165
            PVYG P++ +T  GR ++            ++L  CFCPC  I +
Sbjct: 121 NPVYG-PVVQQT--GRRERSGGYFGCIIDIGLRLIRCFCPCVHIRE 154

[Close]

BLAST of CSPI05G01710 vs. NCBI nr
Match: gi|566160169|ref|XP_006385190.1| (hypothetical protein POPTR_0003s00910g [Populus trichocarpa])

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-10
Identity = 56/159 (35.22%), Postives = 73/159 (45.91%), Query Frame = 1


Query: 24  MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQPSAPPLPP 83
           M+KA KK LK  W + KK+ K  + +E   +     C C CS  T      QPSAPPLPP
Sbjct: 1   MIKAAKK-LKKFWPRKKKRKKTLQYHEPYYHHPPSSCHCCCSYPT---APTQPSAPPLPP 60

Query: 84  WLNDAPTFLPPSTQSQFEHPDTA---------DEMV---EPLVANQWSYQQYLVAEPVYG 143
           WL    T+   S       P+ A          E+V    P+     SYQQYLV  PVYG
Sbjct: 61  WLEPELTYEAVSAPGLLSLPELAHPSHIQVPSQEIVMETTPIYPTLPSYQQYLVPNPVYG 120

Query: 144 VPIIVETESGRGQKWKRLI-----KLFECFCPCFGITQQ 166
           VP+  +    +   +   +      L  CFCPCF I ++
Sbjct: 121 VPVEQKPRREKSTGFFGCVVTFCANLIRCFCPCFRIQEK 155

The following BLAST results are available for this feature:

BLAST of CSPI05G01710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G01710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJG0_CUCSA	5.7e-93	96.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077760 PE=4 SV=1	[more]
B9SPB8_RICCO	4.2e-11	36.84	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0496640 PE=4 SV=1	[more]
B9N785_POPTR	2.1e-10	35.22	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s00910g PE=4 SV=1	[more]
A0A0D2TNG0_GOSRA	2.1e-10	37.35	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G114500 PE=4 SV=1	[more]
V4UZ32_9ROSI	3.0e-09	35.98	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002734mg PE=4 SV=1	[more]

BLAST of CSPI05G01710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G01710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194531\|gb\|KGN49708.1\|	8.1e-93	96.47	hypothetical protein Csa_5G077760 [Cucumis sativus]	[more]
gi\|659121311\|ref\|XP_008460596.1\|	7.4e-62	82.31	PREDICTED: uncharacterized protein LOC103499377 [Cucumis melo]	[more]
gi\|255573836\|ref\|XP_002527837.1\|	6.0e-11	36.84	PREDICTED: uncharacterized protein LOC8262569 [Ricinus communis]	[more]
gi\|823224874\|ref\|XP_012445219.1\|	3.0e-10	37.35	PREDICTED: uncharacterized protein LOC105769255 [Gossypium raimondii]	[more]
gi\|566160169\|ref\|XP_006385190.1\|	3.0e-10	35.22	hypothetical protein POPTR_0003s00910g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G01710.1	CSPI05G01710.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G01710	Csa5G077760	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G01710	MELO3C022933	Melon (DHL92) v3.5.1	cpimeB376
CSPI05G01710	Lsi11G000950	Bottle gourd (USVL1VR-Ls)	cpilsiB340
CSPI05G01710	MELO3C022933.2	Melon (DHL92) v3.6.1	cpimedB369
CSPI05G01710	CsaV3_5G015690	Cucumber (Chinese Long) v3	cpicucB286
CSPI05G01710	Cla97C11G206600	Watermelon (97103) v2	cpiwmbB375
CSPI05G01710	Cucsa.183400	Cucumber (Gy14) v1	cgycpiB290
CSPI05G01710	CsGy5G011760	Cucumber (Gy14) v2	cgybcpiB227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G01710	Watermelon (97103) v2	cpiwmbB383
CSPI05G01710	Cucurbita maxima (Rimu)	cmacpiB767
CSPI05G01710	Cucurbita moschata (Rifu)	cmocpiB754
CSPI05G01710	Watermelon (Charleston Gray)	cpiwcgB377
CSPI05G01710	Watermelon (97103) v1	cpiwmB449
CSPI05G01710	Watermelon (97103) v1	cpiwmB454
CSPI05G01710	Cucurbita pepo (Zucchini)	cpecpiB453