CsGy5G011760 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G011760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	homeobox protein
Location	Chr5 : 13107095 .. 13107562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCCTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACGTACCATAGTAATTTCTACTAATGTGTTTTGTTTGTTTGTGATTTTTATATTTAGAGGTGAACTTCTGGATTCCATGA

mRNA sequence

ATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGAGGTGAACTTCTGGATTCCATGA

Coding sequence (CDS)

ATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGAGGTGAACTTCTGGATTCCATGA

Protein sequence

MKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGREVNFWIP

Homology

[Close]

BLAST of CsGy5G011760 vs. NCBI nr
Match: KGN49708.1 (hypothetical protein Csa_5G077760 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 9.8e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 45  LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 104
           LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR
Sbjct: 83  LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 142

[Close]

BLAST of CsGy5G011760 vs. TrEMBL
Match: tr|A0A0A0KJG0|A0A0A0KJG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.5e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 45  LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 104
           LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR
Sbjct: 83  LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 142

The following BLAST results are available for this feature:

BLAST of CsGy5G011760 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49708.1	9.8e-27	100.00	hypothetical protein Csa_5G077760 [Cucumis sativus]	[more]

BLAST of CsGy5G011760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G011760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G011760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJG0\|A0A0A0KJG0_CUCSA	6.5e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G011760.1	CsGy5G011760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..50

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G011760	Csa5G077760	Cucumber (Chinese Long) v2	cgybcuB225
CsGy5G011760	MELO3C022933	Melon (DHL92) v3.5.1	cgybmeB325
CsGy5G011760	CSPI05G01710	Wild cucumber (PI 183967)	cgybcpiB227
CsGy5G011760	Lsi11G000950	Bottle gourd (USVL1VR-Ls)	cgyblsiB309
CsGy5G011760	MELO3C022933.2	Melon (DHL92) v3.6.1	cgybmedB324
CsGy5G011760	CsaV3_5G015690	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G011760	Cla97C11G206600	Watermelon (97103) v2	cgybwmbB343

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G011760	Watermelon (97103) v2	cgybwmbB348
CsGy5G011760	Cucurbita maxima (Rimu)	cgybcmaB691
CsGy5G011760	Cucurbita moschata (Rifu)	cgybcmoB665
CsGy5G011760	Watermelon (97103) v1	cgybwmB408