CsGy5G011760 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G011760
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionhomeobox protein
LocationChr5 : 13107095 .. 13107562 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCCTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACGTACCATAGTAATTTCTACTAATGTGTTTTGTTTGTTTGTGATTTTTATATTTAGAGGTGAACTTCTGGATTCCATGA

mRNA sequence

ATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGAGGTGAACTTCTGGATTCCATGA

Coding sequence (CDS)

ATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGAGGTGAACTTCTGGATTCCATGA

Protein sequence

MKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGREVNFWIP
Homology
[Close]
BLAST of CsGy5G011760 vs. NCBI nr
Match: KGN49708.1 (hypothetical protein Csa_5G077760 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 9.8e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 45  LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 104
           LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR
Sbjct: 83  LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 142

[Close]
BLAST of CsGy5G011760 vs. TrEMBL
Match: tr|A0A0A0KJG0|A0A0A0KJG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.5e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 45  LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 104
           LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR
Sbjct: 83  LWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 142

The following BLAST results are available for this feature:
BLAST of CsGy5G011760 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49708.19.8e-27100.00hypothetical protein Csa_5G077760 [Cucumis sativus][more]
BLAST of CsGy5G011760 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G011760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G011760 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJG0|A0A0A0KJG0_CUCSA6.5e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G011760.1CsGy5G011760.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..50

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G011760Csa5G077760Cucumber (Chinese Long) v2cgybcuB225
CsGy5G011760MELO3C022933Melon (DHL92) v3.5.1cgybmeB325
CsGy5G011760CSPI05G01710Wild cucumber (PI 183967)cgybcpiB227
CsGy5G011760Lsi11G000950Bottle gourd (USVL1VR-Ls)cgyblsiB309
CsGy5G011760MELO3C022933.2Melon (DHL92) v3.6.1cgybmedB324
CsGy5G011760CsaV3_5G015690Cucumber (Chinese Long) v3cgybcucB232
CsGy5G011760Cla97C11G206600Watermelon (97103) v2cgybwmbB343
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G011760Cucurbita maxima (Rimu)cgybcmaB691
CsGy5G011760Cucurbita moschata (Rifu)cgybcmoB665
CsGy5G011760Watermelon (97103) v1cgybwmB408
CsGy5G011760Watermelon (97103) v2cgybwmbB348