Lsi10G002260 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G002260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Location	chr10 : 3672968 .. 3680514 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAACCCAATTAGAAATTATAGTATTTTAACCTTATTTATTTCTGGGGAAAAAAGTTCCATCCAGAGTTTTTACTTTAAGCTCCCCCTCACCGTAGCACTTCTTCGCGCTCTCTCTCTCTCTCATCTCAGGTTGTGCGTTTGATCGGTGGATCAATGGCGTCGAGTCTGTTCAAAGCGCTTGTTGAATCTTCCTCCAAAATCCCATCTTCGACTAGAAATCTGAGTCTTGTTAGCAATCAAATCGGCCGGCACACCGCCAAATGGATGCAGGTATCCAGTCATTTCTCGCTAATCCTTCTTTCGAAATTTACTTCTTCAACGCCCGTGTTTGAGTTGATTTCTGCAGATTCTGTATTCTTGTTTACAATTCCTTATTCATTCTAACTTTACCTGATAACTGATTTAGAGCTTGGGTCTGAAGGCTCCCAATTAATGTTGTTGTTGTTGTTGTTGTTGTTGTTTTCTTAAATCGATTGTTTTTATGTGGAACTAATTCGTGTAATTTGAAGTGAAGAGAAGGGAAGAGAAAGAAACTTTTTTTTTTCCCAGTGGCATTGATGGAAGCTAAAACTTTTGGTGCTCGTCTTTCATCGAAGCAAATTTATCTAAATTATACAAATATTTTATTTCTCACTAGCTATCGCCCCCTCCCATTCCTGCTTGGACCACGTCTTATCTTCTTCATGTTCTGTGGGTTTTTATATGTACATGAAGATTATCAGAGAATATGCCTTGCAACATTTGGAAGTATTAACTTTTCATTAATATTTGAGAAGTTACAAGCTATAAACTTCCTAAAGAATGTCCAAAAGTAGGAAAGAGAACTGCTCCAGGTTGCATTTATGCTGCTTGCAGCCTAAGAAAACAAAAAAGAGAAGAGCTGTCATGAATAACAAGCTAGTGAACCCCCCTTAAACAGATGGAATGTTCTATGACTGTTGATGTTGGTTTATAATGCCTTTCATATCTTCTCAACTACTTTTATTACTATTTATAAGAAAACAATTTTTATTTAGATACAGGCCATGGAGAGACAATCCCAGGCAAAAAGGAACTATGACTGTCAAAAGAGGTTCTAATTATTAAGAACCAAAACTAAAGGATAATTACAAAGAAAATAGTGGGAGACACTTAGATAGAGGTATTGAAATAAGCCAATCCTCACTCCTCCTAAGCAGTGTTTTAAACAGCCCTCTCCGCCTAGGCTCAAGGCACAGGTCTGGGCCCTCGCTTTGGAAAGGCGAGGCTCACAAAATAAGGCACGCCTCAGGCTCAAAGCCTTGGGCCTTGGGGCTTTTTCATTATTTTTAAAAAATAGTAATAATTAAGAGTTTTCCTTCTTTATTAACTAAAATAATCAAGTTTACTAAGCCTAAATGCAAAATTTCTTGTGTTTGGGGTCTTTTTTTTCTCTCCATATTTCCAGTTCAACTATGCTTTCTCTTTTTAATGTAATACTTTTATATACAGTGCACCTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGCGCCTTTTTGTGCACCTAGGCTCCAGAGGGCCATTGCACCTTAGTGCGCCTAGGGCATTTAAAAACACGGCTCCCAAGAATCTTTAAACCTTTTAAGTCTCCTCCAATTTCTTTCAAGCCAAATGTACCCCAAATAGCTAAATGAGCTACTTGCCTCAGAATTTCCCCTTTACCATCAATGCAAGTGCAACTACTTTTCCTCCATCATTGAACAATAATCCTTGTGTTGAACCAAGCCAACACCAAGTTTTGAGATCTATCCCACACACAGAGAGAGAGAGAGACACATATATATATGTATGTATGTATCTATCTATCTATCTGTATGTATGAATTTGATAAGAAACAAATTTCATTGATGTGTGAAATTTACAAAAGAAGGGTGATGCCCAAACCAATGGAGTTACAAGCGATTTCTCCAATTGGTCAAATCTATCCCACATATTTATTGCGACGTGACAAATATATAGAGTTCTTGCCCCAAATTGTTTGTAGAGAGATTGCTTTCAAGCTTGAACCACTGTGTTTTGTGTAGATATGGTTGTATGGGAAAAAGACTGAAATTGTGTTTTGGGGTATGCCCTTTTTCTAAATGAGTTTGCAGCCGTTTCTGGAATAGTTTGTATTATTTGTTGTTTGAGGTTGAGCGTTCTTGATGCTATGGATGAAATTGTTCAGGTTGAAAATGGATTGTGGGATGATATTTTGGATTTGATGTATGCTATTTTTTGGACTTTTAACTCAAATTTAAGACTGGTTAGTGGTTATCCCTTTTTTCTTTGTTACTAAAAGTTGGGAGTTCTTTTTCGTGAATTTTCTTTAACGTCCACATTCTCTCAATAAAAATTGATTTTTCAATCCCCACCCCACCCAAAAAAAAAAAAAAAAAACAAAAACAAAACAAAACAAAGAAGAAGAAGAAGCACTAGCCAAATCTTTGATCGTTCATTTGATTAGACGTTAAGATGGTACTTGTTCATTTGAGTTGTTGAAAACTGCCATGAGCCTCCTTTCCTCGTTCTCTGGTAAAGTTGTATTTTAAGCTCTTGCCTATAATTATCCTGGGTCTCTGATTCATTGTCCTTTCTCTATGATAATGTGCTTATGACAGCACTTTCTTGTTTGCATAGTGATAGTGCTTAATTTGGGTGCCTTGTCAATTTTGTGAGTAACACCCCAGTCGCTATTTCTCAAGCTATCAAGTATGCATTGCACCACTTTAAAAGCCTTTGGCTAAGGAATAGCCAGTTTGGGCACCTTCAATGCAATTATAGTTCTTATTGATGCATAGGAGTAGGAGTTAGGACTATGCAAAGTAAATATTTAACTGATCCATTTGCTACTTGATGGTAGCAGTATCCTGTTGAGCATGACTTCAATTGAAGGAAGTTGCATGGTACCTCTTTCACTGGTCTTGAAGAACATGTAGTTTAGATTGAACTCCATGTTTGCAATATTAAGATCATTTCCTAACATGTCAACAATATTCTTATATACATGGTCAATCTATTGATCTTAATCTGTTTCGTGTCCAGGATTGCAAGGTTGTACTTTATGAAATAAAAATTGGTTTGCTCATATAGAAAATGAATATTGAAAGATTGTCAAGTATATCATTTCTCATGTTTCGTCTAATTGTTAAAAGCTTATTCTTCCATCCACCATAAAAATTAGCTTTTGTTGCCAATAGACAAATTTTGGATGCCTCTTGAATAGCGAATGAACTAATTTATGATTGGACGTTCTCTGGGAGGGAAGGAATGGTTCTCAAACTAGATCCAGATAAGGCTTTTGCTACTGTTGATGGAGACTTTTGGATGCAATTCTTCAGGCTAAGGTGCTTTGGTCCTCTTTGGTAGTCTTGGGTCAGAGGTTGTATATCTAGTGCCAACTACTCTACCATTATAAATGTTAGGTCTCGAGGGAAAATCATTCCATCTCGTGGAATTAGACAAGCAGACCATTTCTCACCTTTCTTATTTATTTTGGTTTATGATTGCCTTAGTCGCCTTTTGGCCATAGTGCCCATTTAGATACTATTGGGACCCATTCGATTGGTGCATCCTCTTTCTGTTTGAACCACTTACAAGTTGCTTATGACACTCTTTTGTTTTCGATTGCTGATCGGATTGCTTTAGTATGTCTTTTTGAGTTTGTTAATATTTTTGAGAGGGTATTTGGTTTAAAAATCTAGAGTGAGTTGCTTGGGATTCATATTGCTGTTTCTAAGATGGAATGGATGTTGTCTATGTTTGATTGCAAATAGGGTCACTGGCCATCAACCTACATGGGTCTTCCCTTGGGAGGTAATTCTAAAATTGTTTCTTTTTGGTAACTTTTTATTGAGGGCATTTAATACAAGTTTCATAATTGGAAGTATGGTTTTATCTCGAAGAGTGGTAGACACACTTATCCAGGGCTACTCTGGCTATTGTGCCGACTTTTCATTTATCCTTGTTTTGTGTTCCAACTAAGATTACAAGAATATTGGATAAGTTGGTTTGAGATTTTTATGGGTAGTGTGAATTGGGTGACTATTCAGCTTCCTAAATTGATGGTTGGTCTTGACATAGGCAATTTTCAGCGTCGTAATTATTCTTTATTTTTTAAATGAATATGGAGATTTTACACAAAAGAGAGTGCTTTATGGCAGAAGTTTGTTGATGCTAAGTATTATGCATATATGATGGACGAGGTTACAAGAAATATCCAATCGGATTCTCTTAAATCCCCTTGGATATTCATTTGTGAGATTATTAACCTGGTTGCTAGTTGTGCTTGACATTGTCTTGGTAATGGGATTTCTACTTCTTTTTGGCAGACCTCTGAGCTTAGTTGTTTTTGTTTTCCCTTTTTTGCCTTGCGCTTTATCCTGATGCTGATGTGTGGGTTCAGGAAACCGGTGCGTGGGATTTACGTCTTCGCCGCAATCTTAATGATTTAAAAATGATTGAATGGACTAATCTTTCGGAACTCTCCTGGTGCATGGGCTCGGCCTCTTGCACCATCTTTGAGATACTCTGTTAAATCACTTATAGCTTATCTTACTTGTTCCAAATTGGAGAACATTGTTGTAATTGACAGGTGCTCGGATTCTACCCTATTTCATTCATTAAAGAAATTATTTCTTCATCCAAGAAAGAAAGGTAAAGAAAGGTTGTCAATTATAGAATGCATGTCCCACATGAACCCGTGTGCCTTATGAATCTCCAGGAAATCATGAATGAGACCATCGGGTTTTTGAACGACCTAGGGTTTCTATTGAATGTTCTTTCCAACCCAACGTTTTAGTGCCTTGCAGTGGCAATGTCACTGTTCTAAGAATTTGTATTCTAAATGAAATAATTATCTTTGATTGTCCTAACAGTTGTCCAATCTGTTGCACAGTTGCAACATGTAACATTTTTATGCACTTGAAACTTAAATCAAACCTTCTATTGTGCTTACTGCATGATTGGAAGAGTAGGGGCCAAGTAAACACGTCAGACAGAATGTCATTAGCAGAGGCTTTTTATCACTCTAGTGATGGATCCAATCAGCTCTTGGTTGAAATATGAGACTAGGGACTCGTTGTTGCATAAGATCTTTCATCCATGTCCATTAACTAGGATTGAGCCAGTGACGTTGGAGATTTCTCCTATCTTGTAACATGTACAACTTCGTAGATTTATTAAATTATTCTAGATAACCTGGACTTTTTTTGAATGCGCTAGAGTACATGAGAACTATCCAAGATTTTTTATTATTTTAAGTCTTGGATTCTATGCCGCTGCAGATCAATTATTCATAGCCCTCATGCATTTTTCACATTTTCAAGAAGTTTTGAGTTGTGAATGTAGGGTCCCTTCCATGTTAAGATAATTGAACGACTTGTTTCTCTTTACTTCAATGATACTTTTCCCTGTAGAGAAACTCTTCTTGCTCCTTTAAAGGAGACAGTAGTGTTAATCATTGAAAGAGTTATTCTTCCTTCGTTCGAGATGTTTTTTTTTTTCCTGCAGAGGAACTCTTCTTGTTCCATTAAAGGAGAATGCTATCTTTATTAGAGACTTGCTCAATCTTTTCTATTCCAGCATCATGGATGCGGCACTTGAAGTAAGGAATAAAACATAATTTTCAGTCTGTGTAACTAAGTCAACTGGCCTGCTAATAAACTAGCTTCCCTTGGTGGGTACAATTTTCTTTATTCTTACTTTGCAATTTGGTTTGATTTTTTATTTTTGATTTATTTTAGTTTTTAATTGTGATTGTTTGGAAGTCTTCAATTAGGTTATTTATCAATATCTTCTGTGTTGCCTAACTATTCTACATGTACCATAGAGCTCGTTGAGTCATCCATATGCTCAAAGCTGCAAGTTTTTCCCAATTTCTGTATCCTCTTTCGTTACATACTCTCCATTGCAGGCTGGCAGTACGTTTATAACTGCATCAATTTCAATGGTTTTATTAATTCTCTCTCCCATGTGAGCTGTAACAAATGGTTTGTTATTATGCTCATGGGAGTAAGCCCAATATTCTTCCTTTAAGAAGAGTATCATTTTCTCCTTTACTAAAAAAAATAAGAAGAGTATCAGTTTCTGCCTTACGATTTTATTGACAGTTTATTACAACATAAATCAATCCTCCAAACCAGGTGTCACAATTCTTCCTTTCTTAGCTAGTTAGCCCGTGATTGTGTGACATTTGTTGATTCCTTCAAGGAAAAGTTAACCAAGTGAACTTTACCAGAGTGAATATGATTGGGAATATTCTTTTAAATAAGAGAGGTGAAGTTTTGAAATGTTATGGGCCTATGGCACTACGGCTGTAAAAAAAATTTGGATGCCCTGATGTAACTAAGAAGACAAAAAGGGTATTAAACAAATCTCTTTAATAACCCATGTCAGCAAAGATTGCAATGCAAGAAGGTTTTGGTGTGGATGTTATCAATTGGAAGTCCTTAAATATAGTTTGTGATATCACCAACTTCTAACTGATGTGTAGTTCACAAATAATTATTTTGGAACTGAGGTAAACCGGATTCGGTATTATAAGCAATGATATTTTGTAACAAAGGACTCTTTTTAGCGCAAATATTCTTTTTAGCTTGCCTGTCATCTCCCACATTTTCAAGTAAAATCTCATTACTTCATTTTGCTTATGGATTTTTTTTTTTGGGGGTTTTTTCCTTTTGTCTTGATACTGTTCTCTATTGATAATTGATACATTGTTTGACATGTTTGAATCTTGAATTTTCTTTGGCATGACCTCAAAATATTTCGTCTTTTGCTATCTGTATCCTTAAATTATTGAGAGTCAATCAAATTCTACTGACCGTTGAGACATGATATAGTTCTGTCTCTATTTGTTTCGTTTACTTCTAAGAAATATCCTACCGTTTTCTGGGACTAGATATTACTCTTTATGATCCTGTCCAATGCTGAAGGATATATGAAAGTTTTATTTTATTCCCATCTTTAGGATACAAGTAAGAAATCACCTATGGAGTTGATCAACGAGGTTCCACCAATCAAGGTCGAAGGCCGTATCGTTGCTTGCGAGGGAGGTTAGTACATCTCCATACATGTATCCACGCATGCATATTTTCCAAGTAAACAACTCATTAAGGAAGGTGTGTTTCCTTATTTGTATTCAAACACTTGCTGATTGCAGACAGCAATCCTGCCCTTGGGCATCCAATCGAGTTCATATGCCTTGACCGGGAGGAGCCCGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGATCATCACCACTAGAAAATCTGCAAGTGATCATTCCAGCCGGCAACCCTGAACTTGGAAAGACATTACCCTACCTTTCCAAACTTGACTTCTGTAATGCAATGACTGTAATGGTTGTACTCTTGCCTGCATAAATAGGAATTTGTGAATTCCATTCACTCGCACTTTGGCCAGGTCCATTGTCTTTGCCAAATTTATTTCATTGTTGTCTAATGACCCTATCTTGTTGACTCTAATACCAATAAAAGGTTTTTGATCTCTTGGGAGTTGCAAGCTTGAAATTA

mRNA sequence

GCCAACCCAATTAGAAATTATAGTATTTTAACCTTATTTATTTCTGGGGAAAAAAGTTCCATCCAGAGTTTTTACTTTAAGCTCCCCCTCACCGTAGCACTTCTTCGCGCTCTCTCTCTCTCTCATCTCAGGTTGTGCGTTTGATCGGTGGATCAATGGCGTCGAGTCTGTTCAAAGCGCTTGTTGAATCTTCCTCCAAAATCCCATCTTCGACTAGAAATCTGAGTCTTGTTAGCAATCAAATCGGCCGGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCTATGGAGTTGATCAACGAGGTTCCACCAATCAAGGTCGAAGGCCGTATCGTTGCTTGCGAGGGAGACAGCAATCCTGCCCTTGGGCATCCAATCGAGTTCATATGCCTTGACCGGGAGGAGCCCGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGATCATCACCACTAGAAAATCTGCAAGTGATCATTCCAGCCGGCAACCCTGAACTTGGAAAGACATTACCCTACCTTTCCAAACTTGACTTCTGTAATGCAATGACTGTAATGGTTGTACTCTTGCCTGCATAAATAGGAATTTGTGAATTCCATTCACTCGCACTTTGGCCAGGTCCATTGTCTTTGCCAAATTTATTTCATTGTTGTCTAATGACCCTATCTTGTTGACTCTAATACCAATAAAAGGTTTTTGATCTCTTGGGAGTTGCAAGCTTGAAATTA

Coding sequence (CDS)

ATGGCGTCGAGTCTGTTCAAAGCGCTTGTTGAATCTTCCTCCAAAATCCCATCTTCGACTAGAAATCTGAGTCTTGTTAGCAATCAAATCGGCCGGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCTATGGAGTTGATCAACGAGGTTCCACCAATCAAGGTCGAAGGCCGTATCGTTGCTTGCGAGGGAGACAGCAATCCTGCCCTTGGGCATCCAATCGAGTTCATATGCCTTGACCGGGAGGAGCCCGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGATCATCACCACTAG

Protein sequence

MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH

Homology

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BLAST of Lsi10G002260 vs. Swiss-Prot
Match: NDUS6_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 8.2e-40
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQ--------IGRHTAKWMQDTSKKSPMELINE 60
           MAS+L KAL+ S   +PSS RN S+ + Q        +G HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           VPPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]

BLAST of Lsi10G002260 vs. Swiss-Prot
Match: NDUS6_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.3e-08
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of Lsi10G002260 vs. Swiss-Prot
Match: NDUS6_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.3e-08
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of Lsi10G002260 vs. Swiss-Prot
Match: NDUS6_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.3e-08
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of Lsi10G002260 vs. Swiss-Prot
Match: NDUS6_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI + P  +VE RI+AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 53  KEVNENFAIDLIAQQPVNEVEHRIIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 112

Query: 99  TQDHH 103
            Q HH
Sbjct: 113 KQHHH 116

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BLAST of Lsi10G002260 vs. TrEMBL
Match: A0A0A0LNG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.0e-49
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS IPSSTRNLSLV+NQIG+HTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]

BLAST of Lsi10G002260 vs. TrEMBL
Match: V4TXJ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.2e-43
Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSL K L++S S +PS+TRNL+ V+NQI  HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLLKTLIKS-SNLPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD +EPA+CKYCGLRY QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102

[Close]

BLAST of Lsi10G002260 vs. TrEMBL
Match: W9R6Y3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023521 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.6e-42
Identity = 85/103 (82.52%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSL K L+ SS K+   TRNLSLV NQ+G HTAKWMQDTS KSPMELINEVPPIKVEG
Sbjct: 1   MASSLMKTLIRSS-KLALGTRNLSLVPNQVGNHTAKWMQDTSMKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD++PALGHPIEFICLD +EPAVCKYCGLRY QDHHH
Sbjct: 61  RIVACEGDNDPALGHPIEFICLDLKEPAVCKYCGLRYVQDHHH 102

[Close]

BLAST of Lsi10G002260 vs. TrEMBL
Match: M5X1E0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012674mg PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-41
Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLF+ L+ SS    + TRN SLV +QI  HTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 56  MASSLFRTLIRSSKLGSAGTRNFSLVRSQISNHTAKWMQDTSKKSPMELINEVPPIKVEG 115

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD +PALGHPIEFICLD +EPA+CKYCGLRY QDHHH
Sbjct: 116 RIVACEGDIDPALGHPIEFICLDLDEPAICKYCGLRYVQDHHH 158

[Close]

BLAST of Lsi10G002260 vs. TrEMBL
Match: D7T7Q4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02120 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.0e-41
Identity = 84/103 (81.55%), Postives = 92/103 (89.32%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MAS+LFKAL  S ++ PS++R+L LVS QI  HTAKWMQDTSKKSPMELINEVPPIKVE 
Sbjct: 1   MASNLFKALTTSLNR-PSNSRSLCLVSGQISNHTAKWMQDTSKKSPMELINEVPPIKVEA 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD+NPALGHPIEFICLD +EPAVCKYCGLRY QDHHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLKEPAVCKYCGLRYVQDHHH 102

[Close]

BLAST of Lsi10G002260 vs. TAIR10
Match: AT3G03070.1 (AT3G03070.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 164.1 bits (414), Expect = 4.6e-41
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQ--------IGRHTAKWMQDTSKKSPMELINE 60
           MAS+L KAL+ S   +PSS RN S+ + Q        +G HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           VPPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]

BLAST of Lsi10G002260 vs. NCBI nr
Match: gi|659125629|ref|XP_008462784.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 206.5 bits (524), Expect = 2.3e-50
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS IPSSTRNLSLV+NQIG+HTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Lsi10G002260 vs. NCBI nr
Match: gi|449468271|ref|XP_004151845.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 201.8 bits (512), Expect = 5.7e-49
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS IPSSTRNLSLV+NQIG+HTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]

BLAST of Lsi10G002260 vs. NCBI nr
Match: gi|567901454|ref|XP_006443215.1| (hypothetical protein CICLE_v10023015mg [Citrus clementina])

HSP 1 Score: 181.8 bits (460), Expect = 6.1e-43
Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSL K L++S S +PS+TRNL+ V+NQI  HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLLKTLIKS-SNLPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD +EPA+CKYCGLRY QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102

[Close]

BLAST of Lsi10G002260 vs. NCBI nr
Match: gi|703105548|ref|XP_010098275.1| (hypothetical protein L484_023521 [Morus notabilis])

HSP 1 Score: 178.7 bits (452), Expect = 5.1e-42
Identity = 85/103 (82.52%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSL K L+ SS K+   TRNLSLV NQ+G HTAKWMQDTS KSPMELINEVPPIKVEG
Sbjct: 1   MASSLMKTLIRSS-KLALGTRNLSLVPNQVGNHTAKWMQDTSMKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD++PALGHPIEFICLD +EPAVCKYCGLRY QDHHH
Sbjct: 61  RIVACEGDNDPALGHPIEFICLDLKEPAVCKYCGLRYVQDHHH 102

[Close]

BLAST of Lsi10G002260 vs. NCBI nr
Match: gi|658054136|ref|XP_008362822.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 178.7 bits (452), Expect = 5.1e-42
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MASSLFKALVESSSKIPSSTRNLSLVSNQIGRHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLF+ L+ SS    + TRN SLV  QI  HTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFRTLIRSSKLGSAGTRNFSLVRTQISEHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD+NPALGHPIEFICLD +EPA+CKYCGLRY QDHHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLDEPAICKYCGLRYVQDHHH 103

The following BLAST results are available for this feature:

BLAST of Lsi10G002260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUS6_ARATH	8.2e-40	71.17	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidop...	[more]
NDUS6_HUMAN	6.3e-08	41.54	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sap...	[more]
NDUS6_PANTR	6.3e-08	41.54	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan trog...	[more]
NDUS6_PONPY	6.3e-08	41.54	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo py...	[more]
NDUS6_MOUSE	1.4e-07	41.54	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musc...	[more]

BLAST of Lsi10G002260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNG2_CUCSA	4.0e-49	93.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1	[more]
V4TXJ2_9ROSI	4.2e-43	82.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1	[more]
W9R6Y3_9ROSA	3.6e-42	82.52	Uncharacterized protein OS=Morus notabilis GN=L484_023521 PE=4 SV=1	[more]
M5X1E0_PRUPE	2.3e-41	79.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012674mg PE=4 SV=1	[more]
D7T7Q4_VITVI	3.0e-41	81.55	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02120 PE=4 SV=...	[more]

BLAST of Lsi10G002260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03070.1	4.6e-41	71.17	NADH-ubiquinone oxidoreductase-related	[more]

BLAST of Lsi10G002260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125629\|ref\|XP_008462784.1\|	2.3e-50	95.15	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449468271\|ref\|XP_004151845.1\|	5.7e-49	93.20	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|567901454\|ref\|XP_006443215.1\|	6.1e-43	82.52	hypothetical protein CICLE_v10023015mg [Citrus clementina]	[more]
gi\|703105548\|ref\|XP_010098275.1\|	5.1e-42	82.52	hypothetical protein L484_023521 [Morus notabilis]	[more]
gi\|658054136\|ref\|XP_008362822.1\|	5.1e-42	80.58	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019401	Znf_CHCC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G002260.1	Lsi10G002260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019401	Zinc finger, CHCC-type	GENE3D	G3DSA:2.60.260.40		coord: 49..99 score: 2.9
IPR019401	Zinc finger, CHCC-type	PFAM	PF10276	zf-CHCC	coord: 60..97 score: 4.3
None	No IPR available	PANTHER	PTHR13156	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT	coord: 30..103 score: 8.7
None	No IPR available	PANTHER	PTHR13156:SF0	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 6, MITOCHONDRIAL	coord: 30..103 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G002260	Csa2G432800	Cucumber (Chinese Long) v2	culsiB094
Lsi10G002260	CSPI02G27430	Wild cucumber (PI 183967)	cpilsiB092
Lsi10G002260	Cucsa.017430	Cucumber (Gy14) v1	cgylsiB424
Lsi10G002260	CmaCh20G009410	Cucurbita maxima (Rimu)	cmalsiB507
Lsi10G002260	CmoCh20G009520	Cucurbita moschata (Rifu)	cmolsiB491
Lsi10G002260	Cla006810	Watermelon (97103) v1	lsiwmB068
Lsi10G002260	MELO3C024729	Melon (DHL92) v3.5.1	lsimeB053
Lsi10G002260	ClCG02G007680	Watermelon (Charleston Gray)	lsiwcgB055
Lsi10G002260	MELO3C024729.2	Melon (DHL92) v3.6.1	lsimedB054
Lsi10G002260	Cla97C02G034380	Watermelon (97103) v2	lsiwmbB054
Lsi10G002260	Bhi10G001238	Wax gourd	lsiwgoB069
Lsi10G002260	Cp4.1LG05g11970	Cucurbita pepo (Zucchini)	cpelsiB589
Lsi10G002260	Cp4.1LG16g01640	Cucurbita pepo (Zucchini)	cpelsiB220
Lsi10G002260	CsGy2G026860	Cucumber (Gy14) v2	cgyblsiB087
Lsi10G002260	Carg25473	Silver-seed gourd	carlsiB870
Lsi10G002260	CsaV3_2G036030	Cucumber (Chinese Long) v3	cuclsiB105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G002260	Cucurbita maxima (Rimu)	cmalsiB548
Lsi10G002260	Cucurbita moschata (Rifu)	cmolsiB533
Lsi10G002260	Silver-seed gourd	carlsiB961