Cp4.1LG05g11970 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g11970
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
LocationCp4.1LG05 : 8277733 .. 8283718 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTATTTAACAATCGCATTACATGTCAAAATTCCCCACCGACAAGACATCCGACCATGATTTCCGTTGCCCCATTGAGCGACGGCGAAAAGCCCAAACTCTCATCATCTCCGCCGCCACGTGTTTTCCGATCGAAATTGCCGGATATTACAATCCCCGACCATCTCCCTCTTCACGATTATTGCTTTGAGAAAATCTCTGAATTTTCCGACCGCCCATGTTTGATCGTCGGCGCCACCGGAAAATCCTATTCCTTCTCCGAAACCCACTTGTTCTCCAAGAGGGCCGCCGCCACTTTCTCTAAACTTGGCGTTAAGAAAGGGGATTTTATTATGATTCTTCTCAAGAACTCTGCTGAATTTGTTTTTTCCTTTATGGGTTCGTCGATGATTGGCGGTGTCGCCACCACTGCTAATCCGTACTACACGGCGGCGGAGATTTCCAAGCAGTTGAAGATGTCGGGTGCTAAATTGGTGGTTACTTACTCGCATTGTGTTGACAAGCTCCGGGAATCTGACGTGGATCTCACCATTGTTACCGTCGATGATCCGCCGGAGAATTGTTTGAGCTTCTCCATGGTTTACAATGCCGATGAAAATGACGTTCCGTTCTCGGAGATTGACTGGAATGATGCTGTTTCGTTGCCGTTCTCCTCCGGCACGACGGGGACTCCGAAGGGTGTGGTTTTGACCCATAAGAATATGGTGTCGAGTATAGCTCAACAGGTTGTTAAAGAATTGGTTGATACAAATTGTTGGGACGGAGTCCCACGTATGTTTTTTGGGAAAACCCGAAATAAAGACACAACAGCTTATGCTCAAAGTAGAGAGTAACATCCATTGAGGCGGGGACGAGATGGGATGGGAAATCTCGTCCCACCCTATTCCTTTGGACATATCTAATAACTACAATGATTGGAGTTAGAATTTCTCACTTATAAACTCATGATCATTCCCTAAATTAGCGGATGTGGGACTTCCATCATCCAACAGGGATATTCCGTCTCGTTCGTTTGGACATCTCTAATAACTATAAATAATGAAATAGTGTTTGTTAACGTGCAGGTAGATGGACAGAATCCGAACATATACTTGGGAAGGAATGACGTGGTTTTATGTGTGCTTCCGATGTTCCACATATTCTCATTGAGTAGCATAGTTTTGATTTCGATTCGATCTGGAGCAACAATATTATTGATAGAGAAGTTTGAGATTGAGACGTCAATGAGCCTGATAGAGAAGCATGGGGTGACGGTGGCAACCGTGGTGCCACCGATGGTGGTGATGATGGTGAAGAATCCAAAGGTGGCGGATTTCAACCTAAGCTCAATCAGAATGGTGATTTCAGGGGCGGCGCCGCTGGGAAAGCAGATAGAGGAGGCCCTCATGGAAAGGATCCCTCAAGCAATTATTGGTCAGGTATGGATTATAACATAATCTTGTATAATACGGTATTAATGTTATTTGAATGAACTATGTTTACGTTCATATAATTATAGGGTTACGGGATGACGGAAGCAGGCCCGGTGTTGAGTATGTGCACGGCTTTTGCGAAAGACCCTCCAATGCCAACAAAAATAGGGTCGTGTGGGAGAGTTGTGAGAAACTCAGAGCTCAAAATCATTGACCCAAAGACCGGTGTCTCCCTTACCTATAATCAACTCGGAGAGATCTGTATTCGCGGCCCACAAATTATGAAAGGTTCTCTTTTTCTCGTTTTTTTCATTTTCAAATGTTTTTAGATTATATATAAAATGTCGATATTCTTTCTATTTTGTTCGTAACTTTTAAAGGGTTTTCAAAAAAAACTTAATAATCGAACAAATTGATCAACCCCACTTGAATTTGGTTAGAACTTATTAAATTAGGTTAAGTTCAAATAAATTAAATTTTTTATTTATGGTATAATTATACCTATATATATATTTATTTTTTTATTTAATTTCATAATTTATTATTATTATTTATTCTTAATTTTTTTAAAAAATATATTAAAATTAAATTATAAATTTTAATTAAGTGTTTGAAAATAAATAAAAGAATATTTTACGAACTAATATTTTACTTTTATCCAAAAACAAAAAATTGAATAAAGTAATTACATTTTTGGTACCACTGACACGTGACAAAAATATTTATAAAATGCTAGAATAAATGGAGTTAAAGTTTGGTGACAAAAATATTTATAAAATGCTAGAATAAATGGAGTTAAAGTTTGGTGCTAAAATGACATGGCTGTGATGGTAGGATATTTGAACGACCCAGTGGCCACGTCATTGACAGTCGACGTGGAGGGCTGGCTTCACACGGGTGACATTGGATTCATTGACGAAGAAGAAGAAATATTTATAGTTGACCGGATCAAGGAGATTATCAAATATAAGGGTTTCCAGGTACACGTCACCATTATCATAATTTCTACCCAAATAATAATAATAATAAATTATTTTCGCTATTATATTTAATTCTTCACTAATAATGGGATTATTGAGCTTTAATGATTAATTGAAAGCAATAATTAATATAAAAACAATTAAATTAGCTAAAGTCAACCTAACATAATTAACATGTTTCATCGACCAAAGTTCGAATCTCTAATTTTATATTATTGTAATTAACTTTTTAAATTATGGTATTTACAGGTGGCACCGGTCGAGCTCGAATCTCTTCTTCTAACTCATCCATCTATTATAGAGGCCGCTGTGGTTGCGTAAGTGCCCAATTAAAATTATTTAATATTTAATTCTTAAAAGAAAAAAATTAAAAATTAAAATATTGGCTAAATTAATCAAAATTATTTGAAAAATATAATTTTTAAAAGTTTCAATAAATCCCTAAATTTTAAATAAAATCTAAAAAAATATTGATTTTTTTTTTATAGTCTCTAATATTTTATTTTTAAAAAAATATATAAAAATATCCTTATAATTTTTTTAAAATTTTGTTTTAAATTATGAAAAAAATAAAGAAATTGGGGAAAATTACAGGAAAAATGATGAAATTGCTGGGGAAGTTCCAGTGGCCTTCGTAGTTGGTACAGCTGGCAATCAACTTACCCAGGAAGAAGTAAAAGAATTCATTGCAAAGCAGGTTTGTATTATAAAAATGCTATTTTTCCCATATAATAACATTATAATTTTAATTATGTTCGGTTTCTAAATTGTCGAGTATTAACGAGCTTGTGACTAAAATCGTCTTTTCATAAAGTTTATGCGTAAAAAAGATATATAATATTTGAAAGTTTAGGAATTAAATTAAAATTTAAAATTAATTTATTCTCACTTTCGTTTTATTTTCTAATGCAAAATCATCAGGTTGTGTTCTACAAGAGATTGCACGGAGTTTATTTTGTACCCACGATTCCAAAATTGCCCTCGGGAAAAATCTTGAGAAAGGATCTCAAAGCCAAGCTCTCGAACTCACCTAAAGCTACAAAAATGAAAGAGATAGGGAGAGAGATTAAGTAACATGGTCGGATCGTGTTGTAGAAGATGAAAAGGAATGTAAGGAGAATTTAGATTTCAAGTCTCCAACCTCGATCGTAACATTTTTATTTTATATTTCAATTATGTGCCTATGATATAAATATTTTTAATAATAAGAGTTCTTGAGTTTTTTTATTTATTTATGTAAGAATATTAATGAAATTTTTTAAAAATAAATATAAATTGATATAATAGTAATCGAGAAGATTACCTATATTAATTATAAAAAAAAATGATATATCTAGTCTAATATTCTACTTATTTTTTATATAATTTTATTAACTAAATTAATAAAAATATTCATAAAAACTAAATGTATTAATATTACTTTTAAATTTATTTAAACATAGTTCTAATAATAATTATTATTTTTTTAAAGTTAAAAAGGTATAAAAGAGAGTAAATACATTTTAAAGGTTTTTTTAAGTTATTATTTGAAAATTTGAAAATTTGAAAATTAGATATTTTGAGATAAAATACAAAAGTTTAGGGTATTTAGTCTAACCTATAAATAGTTCGATCCAAATTTTTTAGTTTGATCTCCGTCGAAACGTTGCTCTCCTTCGCGCGCTCTCTTTTCTGTGTTTCAGGCTGCGATTGGGTCGGTGTATCAATGGCGTCGAGTCTCTTCAAATCGCTTGTTGAATCTTCCTCCAAATTTCCGTCTTCGGCAAGGAATATCAGTATTGTTAGCAACCAAATCAGTCGGCACACTGCCAAATGGATGCAGGTATCCAGTAATTTCTCGAAAATCTCCCTCAGGAAATTTAATGCTTCTACGCCTGTGTTTGAGTTAATTGCTGCCGACTCTGATTTTTCATTTATAATTTGATCTTCTTTTTAACTCTAATCGAGAACTATTGAACAAACATTTAGAATTTGGGTCTGAAATCCCCCACTTTATGCGGTGATTTGTTTTTGTTGTTCTTGTTTTCTTGAGTCAAGTTGTTATGTGGAAATTGATTGATGTTGTTTGGAGAGGAGAAAAAACCTTGCGAACTGTGGCATTAATGGATGCTAAACCTTTTGGTGTTCGTCTTATCTTCTTCATGGCCTGTGGGTTTTATATGTACATCGGCTATTGGTTTAAATAGAAGATTAGAGGACTCTTTATTGCATAGGATTTTACCTCCATAACATTATCTAGGATTCCAGATCTTTTAGTTCTTCTTATCTTGTTACTTGTTTAACATCTTTTATTTATCTGAATTGTTCTAGATAACCTGGACTTTCTTTGAATGCTCTAGAGTACATGTGAATATCAATGTGAGCTGGTTTGCTCCTATGCTCATGGGGAGTAAGCCAAACATTCTTCCTTTAAGAAGATGCACATTTTCTTGCTCAAAGATTCTATTGACCGTGTATTTTCTATCAACAACACAAATCAAAACTTGTAACGGCTAGATCCACCGTTAGCAAATATTGTCCTTTTTAGGCTTTCCCTTTCGGGCTTCCTCTCAAGGTTTTTAAAACGTGTCTGCTAGGAAGAAGTTTCCACACCCCTATAAAGGGTGTTTCGTTCTCCTCCCAAACAGATATGGAATGTTGGTATAAGTAAATTTTTGGAATGTTGTGGCACTAAATTTTGGTAGTATGAACAATGGTAATTTGCAATAAAGGACTATGTTTTTAGCCTGAATATTCCTTTATCCTGTCATCTCCCACATTTTCACGTGATATCTAATGACTTAATTTTGCTTTTGGCAAATTTTAGTTTTGATTACTATTCTCTTTTGAATTTTCTTTGGCATGAGTTCTAAATACTTTGCCTTTTGAAGTCTGTTTCCTTAAATCATTGAGGGTCAATCAAGTTCTTCTGATTGTGGAGCTTGATATATGGAAACTTTATTGTATTTTCTTCTCTAGGATATAAGTAAGAAATCCCCAATGGAGTTGATTAACGAGGTTCCACCCATCAAGGTCGAAGGGCGTATCGTTGCTTGTGAGGGAGGTTAGTCTGCAAATGTCTTCTTTCATGCATATTTTCATAGGAAAGCACTTTCTAAGTAAGGGGGGATTGCTGAGTTGAATTCAAATCATTGCTGGTTTGCAGACAGCAATCCTGCCCTTGGGCATCCAATCGAGTTCATATGTCTCGATCGAGAGGGGCCCGCGGTCTGCAAGTACTGTGGCCTGCGCTTTACTCAGGACCATCACCACTGATCATTCCAGCTAGCAACCCTGAACTTGGAAAGCCAATACCCTTCCGCTCCAAACTTGACCTCTGTAATGCAATGACTGCAACTCCTGCCTGCATAAATAGGAATTTGAGAACTCCATTCACTCACACTTCGCCCGGGTCCATTGTTTTTTCCAAATTTGTTTCATTGCTTAAAAGGATTTGTTTAATGGACCTATCTTGCTGTACCAATAAAAGGTTTTTTTTTTTTCTCCTAATGTCTTGGAGTTGGAAGCTTGTTCATTCTTATGAAATGGAAATTCGAATCTTTAACATTTTTATCGATTGAGTTGACATATTTTTATTAATGTTTGTCGTATAAT

mRNA sequence

CTTTATTTAACAATCGCATTACATGTCAAAATTCCCCACCGACAAGACATCCGACCATGATTTCCGTTGCCCCATTGAGCGACGGCGAAAAGCCCAAACTCTCATCATCTCCGCCGCCACGTGTTTTCCGATCGAAATTGCCGGATATTACAATCCCCGACCATCTCCCTCTTCACGATTATTGCTTTGAGAAAATCTCTGAATTTTCCGACCGCCCATGTTTGATCGTCGGCGCCACCGGAAAATCCTATTCCTTCTCCGAAACCCACTTGTTCTCCAAGAGGGCCGCCGCCACTTTCTCTAAACTTGGCGTTAAGAAAGGGGATTTTATTATGATTCTTCTCAAGAACTCTGCTGAATTTGTTTTTTCCTTTATGGGTTCGTCGATGATTGGCGGTGTCGCCACCACTGCTAATCCGTACTACACGGCGGCGGAGATTTCCAAGCAGTTGAAGATGTCGGGTGCTAAATTGGTGGTTACTTACTCGCATTGTGTTGACAAGCTCCGGGAATCTGACGTGGATCTCACCATTGTTACCGTCGATGATCCGCCGGAGAATTGTTTGAGCTTCTCCATGGTTTACAATGCCGATGAAAATGACGTTCCGTTCTCGGAGATTGACTGGAATGATGCTGTTTCGTTGCCGTTCTCCTCCGGCACGACGGGGACTCCGAAGGGTGTGGTTTTGACCCATAAGAATATGGTGTCGAGTATAGCTCAACAGGTAGATGGACAGAATCCGAACATATACTTGGGAAGGAATGACGTGGTTTTATGTGTGCTTCCGATGTTCCACATATTCTCATTGAGTAGCATAGTTTTGATTTCGATTCGATCTGGAGCAACAATATTATTGATAGAGAAGTTTGAGATTGAGACGTCAATGAGCCTGATAGAGAAGCATGGGGTGACGGTGGCAACCGTGGTGCCACCGATGGTGGTGATGATGGTGAAGAATCCAAAGGTGGCGGATTTCAACCTAAGCTCAATCAGAATGGTGATTTCAGGGGCGGCGCCGCTGGGAAAGCAGATAGAGGAGGCCCTCATGGAAAGGATCCCTCAAGCAATTATTGGTCAGGGTTACGGGATGACGGAAGCAGGCCCGGTGTTGAGTATGTGCACGGCTTTTGCGAAAGACCCTCCAATGCCAACAAAAATAGGGTCGTGTGGGAGAGTTGTGAGAAACTCAGAGCTCAAAATCATTGACCCAAAGACCGGTGTCTCCCTTACCTATAATCAACTCGGAGAGATCTGTATTCGCGGCCCACAAATTATGAAAGGATATTTGAACGACCCAGTGGCCACGTCATTGACAGTCGACGTGGAGGGCTGGCTTCACACGGGTGACATTGGATTCATTGACGAAGAAGAAGAAATATTTATAGTTGACCGGATCAAGGAGATTATCAAATATAAGGGTTTCCAGGTGGCACCGGTCGAGCTCGAATCTCTTCTTCTAACTCATCCATCTATTATAGAGGCCGCTGTGGTTGCGAAAAATGATGAAATTGCTGGGGAAGTTCCAGTGGCCTTCGTAGTTGGTACAGCTGGCAATCAACTTACCCAGGAAGAAGTAAAAGAATTCATTGCAAAGCAGGTTGTGTTCTACAAGAGATTGCACGGAGTTTATTTTGTACCCACGATTCCAAAATTGCCCTCGGGAAAAATCTTGAGAAAGGATCTCAAAGCCAAGCTCTCGAACTCACCTAAAGCTACAAAAATGAAAGAGATAGGGAGAGAGATTAAGTAACATGGTCGGATCGTGTTGTAGAAGATGAAAAGGAATGTAAGGAGAATTTAGATTTCAAGTCTCCAACCTCGATCGTAACATTTTTATTTTATATTTCAATTATGTGCCTATGATATAAATATTTTTAATAATAAGAGTTCTTGAGTTTTTTTATTTATTTATGTAAGAATATTAATGAAATTTTTTAAAAATAAATATAAATTGATATAATAGTAATCGAGAAGATTACCTATATTAATTATAAAAAAAAATGATATATCTAGTCTAATATTCTACTTATTTTTTATATAATTTTATTAACTAAATTAATAAAAATATTCATAAAAACTAAATGTATTAATATTACTTTTAAATTTATTTAAACATAGTTCTAATAATAATTATTATTTTTTTAAAGTTAAAAAGGTATAAAAGAGAGTAAATACATTTTAAAGGTTTTTTTAAGTTATTATTTGAAAATTTGAAAATTTGAAAATTAGATATTTTGAGATAAAATACAAAAGTTTAGGGTATTTAGTCTAACCTATAAATAGTTCGATCCAAATTTTTTAGTTTGATCTCCGTCGAAACGTTGCTCTCCTTCGCGCGCTCTCTTTTCTGTGTTTCAGGCTGCGATTGGGTCGGTGTATCAATGGCGTCGAGTCTCTTCAAATCGCTTGTTGAATCTTCCTCCAAATTTCCGTCTTCGGCAAGGAATATCAGTATTGTTAGCAACCAAATCAGTCGGCACACTGCCAAATGGATGCAGGATATAAGTAAGAAATCCCCAATGGAGTTGATTAACGAGGTTCCACCCATCAAGGTCGAAGGGCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGGCATCCAATCGAGTTCATATGTCTCGATCGAGAGGGGCCCGCGGTCTGCAAGTACTGTGGCCTGCGCTTTACTCAGGACCATCACCACTGATCATTCCAGCTAGCAACCCTGAACTTGGAAAGCCAATACCCTTCCGCTCCAAACTTGACCTCTGTAATGCAATGACTGCAACTCCTGCCTGCATAAATAGGAATTTGAGAACTCCATTCACTCACACTTCGCCCGGGTCCATTGTTTTTTCCAAATTTGTTTCATTGCTTAAAAGGATTTGTTTAATGGACCTATCTTGCTGTACCAATAAAAGGTTTTTTTTTTTTCTCCTAATGTCTTGGAGTTGGAAGCTTGTTCATTCTTATGAAATGGAAATTCGAATCTTTAACATTTTTATCGATTGAGTTGACATATTTTTATTAATGTTTGTCGTATAAT

Coding sequence (CDS)

ATGGCGTCGAGTCTCTTCAAATCGCTTGTTGAATCTTCCTCCAAATTTCCGTCTTCGGCAAGGAATATCAGTATTGTTAGCAACCAAATCAGTCGGCACACTGCCAAATGGATGCAGGATATAAGTAAGAAATCCCCAATGGAGTTGATTAACGAGGTTCCACCCATCAAGGTCGAAGGGCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGGCATCCAATCGAGTTCATATGTCTCGATCGAGAGGGGCCCGCGGTCTGCAAGTACTGTGGCCTGCGCTTTACTCAGGACCATCACCACTGA

Protein sequence

MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH
Homology
[Close]
BLAST of Cp4.1LG05g11970 vs. Swiss-Prot
Match: NDUS6_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.8e-37
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQ--------ISRHTAKWMQDISKKSPMELINE 60
           MAS+L K+L+ S    PSS RN S+ + Q        +  HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVEGRIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           VPPIKV+GRIVACEGD+NPALGHPIEFICLD   PA+CKYCGLR+ QDHHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]
BLAST of Cp4.1LG05g11970 vs. Swiss-Prot
Match: NDUS6_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 39  QDISKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-GPAVCKYCGLRF 98
           +++++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E     C YCGL+F
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]
BLAST of Cp4.1LG05g11970 vs. Swiss-Prot
Match: NDUS6_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 39  QDISKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-GPAVCKYCGLRF 98
           +++++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E     C YCGL+F
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]
BLAST of Cp4.1LG05g11970 vs. Swiss-Prot
Match: NDUS6_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 39  QDISKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-GPAVCKYCGLRF 98
           +++++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E     C YCGL+F
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]
BLAST of Cp4.1LG05g11970 vs. Swiss-Prot
Match: NDUS6_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-08
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 39  QDISKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-GPAVCKYCGLRF 98
           +++++   ++LI + P  +VE RI+AC+G    ALGHP  +I LD+E     C YCGL+F
Sbjct: 53  KEVNENFAIDLIAQQPVNEVEHRIIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 112

Query: 99  TQDHH 103
            Q HH
Sbjct: 113 KQHHH 116

[Close]
BLAST of Cp4.1LG05g11970 vs. TrEMBL
Match: A0A0A0LNG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-44
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS  PSS RN+S+V+NQI +HTAKWMQD SKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDRE PAVCKYCGLR+TQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]
BLAST of Cp4.1LG05g11970 vs. TrEMBL
Match: V4TXJ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-41
Identity = 82/103 (79.61%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASSL K+L++SS+  PS+ RN++ V+NQIS HTAKWMQD+SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLLKTLIKSSN-LPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD + PA+CKYCGLR+ QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102

[Close]
BLAST of Cp4.1LG05g11970 vs. TrEMBL
Match: M5X1E0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012674mg PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.7e-39
Identity = 78/103 (75.73%), Postives = 88/103 (85.44%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASSLF++L+ SS    +  RN S+V +QIS HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 56  MASSLFRTLIRSSKLGSAGTRNFSLVRSQISNHTAKWMQDTSKKSPMELINEVPPIKVEG 115

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGD +PALGHPIEFICLD + PA+CKYCGLR+ QDHHH
Sbjct: 116 RIVACEGDIDPALGHPIEFICLDLDEPAICKYCGLRYVQDHHH 158

[Close]
BLAST of Cp4.1LG05g11970 vs. TrEMBL
Match: A0A0S3SED9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G251400 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.3e-39
Identity = 78/103 (75.73%), Postives = 89/103 (86.41%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASS+ ++L+  SS   +S R+ S+V++QIS HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSVLRNLMRFSSSRNTSTRSFSLVTSQISNHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD   PA+CKYCGLR+ QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLPEPAICKYCGLRYVQDHHH 103

[Close]
BLAST of Cp4.1LG05g11970 vs. TrEMBL
Match: A0A0L9V8D8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g198900 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.3e-39
Identity = 78/103 (75.73%), Postives = 89/103 (86.41%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASS+ ++L+  SS   +S R+ S+V++QIS HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSVLRNLMRFSSSRNTSTRSFSLVTSQISNHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD   PA+CKYCGLR+ QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLPEPAICKYCGLRYVQDHHH 103

[Close]
BLAST of Cp4.1LG05g11970 vs. TAIR10
Match: AT3G03070.1 (AT3G03070.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 155.2 bits (391), Expect = 2.1e-38
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQ--------ISRHTAKWMQDISKKSPMELINE 60
           MAS+L K+L+ S    PSS RN S+ + Q        +  HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVEGRIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           VPPIKV+GRIVACEGD+NPALGHPIEFICLD   PA+CKYCGLR+ QDHHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]
BLAST of Cp4.1LG05g11970 vs. NCBI nr
Match: gi|659125629|ref|XP_008462784.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-46
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS  PSS RN+S+V+NQI +HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDRE PAVCKYCGLR+TQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]
BLAST of Cp4.1LG05g11970 vs. NCBI nr
Match: gi|449468271|ref|XP_004151845.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-44
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS  PSS RN+S+V+NQI +HTAKWMQD SKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDRE PAVCKYCGLR+TQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]
BLAST of Cp4.1LG05g11970 vs. NCBI nr
Match: gi|567901454|ref|XP_006443215.1| (hypothetical protein CICLE_v10023015mg [Citrus clementina])

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-41
Identity = 82/103 (79.61%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASSL K+L++SS+  PS+ RN++ V+NQIS HTAKWMQD+SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLLKTLIKSSN-LPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD + PA+CKYCGLR+ QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102

[Close]
BLAST of Cp4.1LG05g11970 vs. NCBI nr
Match: gi|658054136|ref|XP_008362822.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 171.4 bits (433), Expect = 8.2e-40
Identity = 79/103 (76.70%), Postives = 88/103 (85.44%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASSLF++L+ SS    +  RN S+V  QIS HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFRTLIRSSKLGSAGTRNFSLVRTQISEHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGD+NPALGHPIEFICLD + PA+CKYCGLR+ QDHHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLDEPAICKYCGLRYVQDHHH 103

[Close]
BLAST of Cp4.1LG05g11970 vs. NCBI nr
Match: gi|645257777|ref|XP_008234567.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 168.7 bits (426), Expect = 5.3e-39
Identity = 78/103 (75.73%), Postives = 88/103 (85.44%), Query Frame = 1 

Query: 1   MASSLFKSLVESSSKFPSSARNISIVSNQISRHTAKWMQDISKKSPMELINEVPPIKVEG 60
           MASSLF++L+ SS    +  RN S+V +QIS HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFRTLIRSSKLGSAGTRNFSLVRSQISNHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREGPAVCKYCGLRFTQDHHH 104
           RIVACEGD +PALGHPIEFICLD + PA+CKYCGLR+ QDHHH
Sbjct: 61  RIVACEGDIDPALGHPIEFICLDLDEPAICKYCGLRYVQDHHH 103

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g11970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUS6_ARATH3.8e-3767.57NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidop... [more]
NDUS6_HUMAN2.2e-0843.08NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sap... [more]
NDUS6_PANTR2.2e-0843.08NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan trog... [more]
NDUS6_PONPY2.2e-0843.08NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo py... [more]
NDUS6_MOUSE4.9e-0843.08NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musc... [more]
BLAST of Cp4.1LG05g11970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNG2_CUCSA1.3e-4485.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1[more]
V4TXJ2_9ROSI1.4e-4179.61Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1[more]
M5X1E0_PRUPE3.7e-3975.73Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012674mg PE=4 SV=1[more]
A0A0S3SED9_PHAAN8.3e-3975.73Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G251400 PE=... [more]
A0A0L9V8D8_PHAAN8.3e-3975.73Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g198900 PE=4 SV=1[more]
BLAST of Cp4.1LG05g11970 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03070.12.1e-3867.57 NADH-ubiquinone oxidoreductase-related[more]
BLAST of Cp4.1LG05g11970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125629|ref|XP_008462784.1|5.9e-4687.38PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|449468271|ref|XP_004151845.1|1.9e-4485.44PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|567901454|ref|XP_006443215.1|2.0e-4179.61hypothetical protein CICLE_v10023015mg [Citrus clementina][more]
gi|658054136|ref|XP_008362822.1|8.2e-4076.70PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|645257777|ref|XP_008234567.1|5.3e-3975.73PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019401Znf_CHCC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11970.1Cp4.1LG05g11970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019401Zinc finger, CHCC-typeGENE3DG3DSA:2.60.260.40coord: 49..99
score: 1.1
IPR019401Zinc finger, CHCC-typePFAMPF10276zf-CHCCcoord: 60..97
score: 1.3
NoneNo IPR availablePANTHERPTHR13156NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNITcoord: 16..103
score: 9.8
NoneNo IPR availablePANTHERPTHR13156:SF0NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 6, MITOCHONDRIALcoord: 16..103
score: 9.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g11970CmaCh20G009410Cucurbita maxima (Rimu)cmacpeB585
Cp4.1LG05g11970CmoCh20G009520Cucurbita moschata (Rifu)cmocpeB534
Cp4.1LG05g11970Cla006810Watermelon (97103) v1cpewmB728
Cp4.1LG05g11970Csa2G432800Cucumber (Chinese Long) v2cpecuB706
Cp4.1LG05g11970MELO3C024729Melon (DHL92) v3.5.1cpemeB672
Cp4.1LG05g11970ClCG02G007680Watermelon (Charleston Gray)cpewcgB663
Cp4.1LG05g11970CSPI02G27430Wild cucumber (PI 183967)cpecpiB708
Cp4.1LG05g11970Lsi10G002260Bottle gourd (USVL1VR-Ls)cpelsiB589
Cp4.1LG05g11970MELO3C024729.2Melon (DHL92) v3.6.1cpemedB806
Cp4.1LG05g11970CsaV3_2G036030Cucumber (Chinese Long) v3cpecucB0881
Cp4.1LG05g11970Bhi10G001238Wax gourdcpewgoB0950
Cp4.1LG05g11970Carg25473Silver-seed gourdcarcpeB1323
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g11970Cp4.1LG16g01640Cucurbita pepo (Zucchini)cpecpeB309
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g11970Cucumber (Gy14) v2cgybcpeB242
Cp4.1LG05g11970Silver-seed gourdcarcpeB0568
Cp4.1LG05g11970Silver-seed gourdcarcpeB1469
Cp4.1LG05g11970Cucurbita pepo (Zucchini)cpecpeB097
Cp4.1LG05g11970Cucumber (Gy14) v1cgycpeB0690
Cp4.1LG05g11970Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g11970Cucurbita moschata (Rifu)cmocpeB595