CmaCh20G009410 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G009410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Location	Cma_Chr20 : 4722504 .. 4727108 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTCCGTCGAGCGTTTATACTTCGAGCTCTCTCTGGCCGTAGCTCTCCTTCGCGTTCTCTTTCTCCATCTCAGGTTGTGTGTTTGATCGGTGGATCAATGGCGTCGAGTCTGTTCAAAGCACTTGTTGAATCTTCCTCCAAAACTCCATCTTCGGCTAGAAGTCTGAGTCTTGTTAGCAACCAAATCGGCCAGCACACCGCCAAATGGATGCAGGTATCCAGTAATTTCTCGCAAATCCTTCCTTTGAAATTTATGGCTTCGATGCCTGTGTTTCAATTGATCTCTTCAGATTTTGTGTTCTTGTTTATAATTCGTTGTTCTTTCTAACTTTACCCGAGAACTGATTTAGAGATTGGGTCTGAAGGCTCCCAATTTATGTGGTGGTTTTCTTTTGTTTGTTGTTGTTGTTGTTGTTTTTTTTGATCGATTGTTTTTATGTGGAAATTAATTCATGTTATTTGAAGAGAACAGAAAGAAACTTGTTTTCCAGTGGCATTGATGGATGCTAAACCTTTTGGTGCTCGTCTTTCATCGAAGCAAATTTTATATTAACTATACAAATATTTTATTTCTCACCTAGCTATCTTCCCCTCGCCTCCCTGCTTAGATTATGTATTATCTTCTTCATGTTCTGTTGGTTTTGTATGTACATGAAGATTATCAGAGTACATGCCTCACCTTTAGAAATATTAAAGAGCTATTTCTCTATATCCTTTTCTCTTGATGGCCACCTGCCACTTAAATTTTTTATCTTTGATTAGAAATATTAACTTTTCGTTGATATTTGAGAACTAACGAGCTATCATCTTCCTAAAGAATGTATAAAAGTAGAAAAGAGAACTCCTCCAGGTTAAAAGAAAAAAAAAAAAAGAAAAAGAGGAGCCGAATAGCAAGCCATGGAACACCTCCCCTCTCCAAAAAAGAGTGGAAGTTGAAACTCGGGAAAAAGAGAGTAGGACAAATGTTCCGAATTTCTTGCATCCTGGTGCCTAAAGAAGAGGTGTTGGCATATTCTTGTACGAGTGCGTAGCAATGCCTGAAAATTTTCCCTCGGATCATTTTTTTTATCACCATGCCTGTTTAGAATTTTTGGCTCTTCTTCTAGGGTTGATTTGAGCTCTTCTTTTTAACTTGATAATTGACGTCCACATGCCTAGTATTCTCTAGTTGGAACTAGTTTATTCATTTTCAGCTCCTTGCTCGGCAACATCTAGTCTTCTACCACAAAACTCTTTGGTTGCATTGCGTTAAATGATTGCAATATGCTTGCACTTCCAAGTTGAAGAAATAACCCACCACCTCATAGTACAATTAAGCAGAAGGCTTCAACTCACTAAATGCCATACCTACTATGACCTTCGGGATATAAAAATTTCTTACCAATTGCATGACCTTTGTATTTAAGCTAGCTGCCTAACTAAGATTCCTTCTTTCACTTCTACATTTTTCGTAGTTGGACCCTATAAATGCAAGGTACTTTCTCAGGGTAGCACATTCTCCTTCAACAGGTTCTATGACTGTTGGTGTTGCTTTCTAATGGCTTTCATATCTTCTCAATTATTATTATTACTATGTATAAGATTTTTTTCATTAAGATGCAGGCCATGCCCTGGAAAAAAGGAACTATGACTACCAGAAGAGGTTCCAATTATAAAGAACCAAAGGTAAAGGATAGTTACAAACCTATCAGTGGGAGACACTTAGATAGAGGTATTGATATAAGTCAATCCTCAGACATCCTCCCAAGAATCCTCAACCCTTTTGAATATCCTCCAATTTCTTTCAAACCAAACATACCCTAAAATAGCTAAGTTAGCTAGGTGCTTGCCTCAAAACTTTCCCTTTACCACCAATCCGGGTGCAACAGGCAACTACTTTTTCCTTTTACTGAACAATAATCCTTGCCTTGCATTGCATAAAGGCAACACCACGACAGTTTTGAGATCTATCCCGCATATTTATTGCAATGTGACATATTTATAGAGATCTTGCCCCGAATTTTGCAGAGTGCCTGCTTTCAAGCTTGAACTGGTGTTTTTTGTGTAGTTATGGACATATGGGAAAAAATTAAAACTATGCTTCTGGGTATGCCCTTTTCTTCATGAGTTTTGAGCCGTTTTCCATATAGTTTTGGATTATTTGTTGATTGAGGTTGAGCATTCATGAGACGATGGATGACGGTGTTCAGGTTGAAAATGGGGTTCTTTACCGTAGTTTATTTGGCTAGAAAGGAAAAACAGTAGAATGTTTGTGCAGTTAGATGAATGGTGGGATGATATTTGGGATTTGATGCATGCTCTTTTTTGGACTCATAACTCAAATTTAAGAACTGTTTAGTGGTTATCCTTTTTTTGTTACCAAAAGTTGGAGTTCATTGTCGTGAATTTTCTTTAACATGTTAACAACGTTCTTAACTACTTGGTCCAATCTGTTCCGTGTCCACCCCCTAGATAGTGCCAGGTGGTCCCTAATGACTTGAAAGTTGGTTTTCTCATATAGAAAGATTGTCAACTATAGAATGCATGTCCCACATGAACCCCTGCTTTATGAATCTCCAGGAAATCATGAGCAAGACCATCGGATATTTCACTGACCTAGGTTCTTCTATTGAATGTTCTTTCCAACCCAACATCTCATTGCCTTGCAGTGGCGATGTCATTGTTTTAAGAATTTGTCTTCCAAGGAAACCATAATCTTTGTTTATCCTAACAGCTAATCGTTGCACGGTTGCAGCATGTAACATTCTTATGCACTTGAAGCAAGCAGCCCTTCTAGTGTGCTTGCTTGGAGGAGTAGTTGCCTAGTAAACAAGTCAGAGAGAATGTCATTAGCAGAGGTTTTTTTTATCACTCTATTAATAGATTTGATCAGCTCTTGGTTAAAATAGGAGACTAGAGGACTCTTTCTTGCATAAGATTTTACATCCATGTCCATTAACTAGGATCAAGTCAGTCTAACAGCGGAGACTTTCTAGATTTTTCCTATTTTGTAATATGTACACCATCTTAGATTTATCTAAATTACTTTAGATAACCTGGATTTTCTTGGAGAGCTCTAAAGTATAATACGAGAACTATCCATGGATTTTTTTTTTTAGTTATTTAAGTGTAGGATTCTATCGCATTGCAATCGATTCTTCACTACCCTCGTGCGTTTTTCACATTTTCAAGAAGTTTTGAGTTGTGAAAGTAGGGTTTCCCTTCCATGTTTTGATCATTGAAAGCGTTGTAACTAAATCAACCGGCCTGCTAATAAAATAGCTTACTCTGATGGGGTTCAATTTTCTTAATTCTTACTTGGCAATTTCGTTGGTTTTCTTAATTGTGATTGCTTGAGAGTCTCAATTAGGTTTTCATCAACATCTACTGTGTTGCCCAACTATTCTACTTGTACCATAGAGTTCGTTGAGTTATCCCTGTTCCCAAAGCTGCAAGTTTTTCATATATTTTTTTTTCCAATATCTGTATCCTCTTCAGTACATACGTGTTGCAGGCGTTAGTGCGTTTTATAACTGCATCAATTTCAATGGTCTTGTTAATTAACTCTTCCATTTTCAAATGATATGTCGTGACTTCATTTTGCTTTTGGGAAATTGTCTGGATTACTGTTCTCTTTTAATAATTGATACATTGTTTGACATGTTTGGATCTCGAATTTTTTTTGGCATGATTTCAGAACATTTTTTTTTTCCATCTATTTGCTTAAATTATTGAGGGTCAATCAAGTTCAACTGACGGTTGAGACATGATATAGCTCTTTCTATTTCTTTCATTTACTTCTAAGAAATATCCAACCGTTTTGGGGGATAGATTCTACTCTTTGTGATCCGACTGTTGAGACATGATATAGTTCTTTCTATTTCTTTCATTTACTTCTAAGAAATATCGAGCCATTTTGGGGGAAAATTCTACTCTTTGTGATCCTATCCAATGCTGAAGGATATATGAAAGTTCTATTTTATTTTCATATCTAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTCGAAGGCCGTATCGTTGCTTGTGAGGGAGGTTAGTCCATCTCCATACATGTATCCATGCTTGCATATAATCCTAGTAAATAATTTATTAAGGAAGGTGTGATTCCTTATTTTGATTCAAACAAACTGCTGCTGATTGCAGACAGCAATCCTGCCCTTGGTCATCCAATTGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGACCATCATCACTAGAAGATCTGCAAGTGATCATTCCAGACAGCAACCCTGAACATGGAAAGACAATACCCTACCTTTTCCAAAGTTGACTTCTGTAACGAAATGACTGTCATGGTTGTACTCTGCCTGCATAAATAGGAATTTGGGAATTCCATTCACTCACACTTGGCTGGTTCCATTGTCTTTGCCAAATTTGTTTCATTGCCGTGTCTAATGACTTTATCTTGTTGACTCGAATTCCAATAAATGGTTTTTGATGTCTTGGAGTTGCAAGATTGAAATGACTCACTTTTTCATTTCTAGCCTCGATCTTATGTGCCTAGCATAGTATCACCGAG

mRNA sequence

AACTTCCGTCGAGCGTTTATACTTCGAGCTCTCTCTGGCCGTAGCTCTCCTTCGCGTTCTCTTTCTCCATCTCAGGTTGTGTGTTTGATCGGTGGATCAATGGCGTCGAGTCTGTTCAAAGCACTTGTTGAATCTTCCTCCAAAACTCCATCTTCGGCTAGAAGTCTGAGTCTTGTTAGCAACCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTCGAAGGCCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGTCATCCAATTGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGACCATCATCACTAGAAGATCTGCAAGTGATCATTCCAGACAGCAACCCTGAACATGGAAAGACAATACCCTACCTTTTCCAAAGTTGACTTCTGTAACGAAATGACTGTCATGGTTGTACTCTGCCTGCATAAATAGGAATTTGGGAATTCCATTCACTCACACTTGGCTGGTTCCATTGTCTTTGCCAAATTTGTTTCATTGCCGTGTCTAATGACTTTATCTTGTTGACTCGAATTCCAATAAATGGTTTTTGATGTCTTGGAGTTGCAAGATTGAAATGACTCACTTTTTCATTTCTAGCCTCGATCTTATGTGCCTAGCATAGTATCACCGAG

Coding sequence (CDS)

ATGGCGTCGAGTCTGTTCAAAGCACTTGTTGAATCTTCCTCCAAAACTCCATCTTCGGCTAGAAGTCTGAGTCTTGTTAGCAACCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTCGAAGGCCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGTCATCCAATTGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGACCATCATCACTAG

Protein sequence

MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH

Homology

[Close]

BLAST of CmaCh20G009410 vs. Swiss-Prot
Match: NDUS6_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.0e-38
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQ--------IGQHTAKWMQDTSKKSPMELINE 60
           MAS+L KAL+ S    PSS R+ S+ + Q        +G HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           VPPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]

BLAST of CmaCh20G009410 vs. Swiss-Prot
Match: NDUS6_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-08
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of CmaCh20G009410 vs. Swiss-Prot
Match: NDUS6_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-08
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of CmaCh20G009410 vs. Swiss-Prot
Match: NDUS6_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-08
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +VE R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQDHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of CmaCh20G009410 vs. Swiss-Prot
Match: NDUS6_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI + P  +VE RI+AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 53  KEVNENFAIDLIAQQPVNEVEHRIIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 112

Query: 99  TQDHH 103
            Q HH
Sbjct: 113 KQHHH 116

[Close]

BLAST of CmaCh20G009410 vs. TrEMBL
Match: A0A0A0LNG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-47
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS  PSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]

BLAST of CmaCh20G009410 vs. TrEMBL
Match: V4TXJ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-41
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSL K L++SS+  PS+ R+L+ V+NQI +HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLLKTLIKSSN-LPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD +EPA+CKYCGLRY QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102

[Close]

BLAST of CmaCh20G009410 vs. TrEMBL
Match: D7T7Q4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02120 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-41
Identity = 85/103 (82.52%), Postives = 92/103 (89.32%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MAS+LFKAL  S ++ PS++RSL LVS QI  HTAKWMQDTSKKSPMELINEVPPIKVE 
Sbjct: 1   MASNLFKALTTSLNR-PSNSRSLCLVSGQISNHTAKWMQDTSKKSPMELINEVPPIKVEA 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD+NPALGHPIEFICLD +EPAVCKYCGLRY QDHHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLKEPAVCKYCGLRYVQDHHH 102

[Close]

BLAST of CmaCh20G009410 vs. TrEMBL
Match: V7AE46_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G020300g PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-40
Identity = 82/103 (79.61%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASS+ + L++ SS T +S RS SLV++QI  HTAKWMQDTSKKSPMELINEVPPIKV+G
Sbjct: 1   MASSVLRNLMKFSSSTNTSTRSFSLVASQISNHTAKWMQDTSKKSPMELINEVPPIKVDG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD+NPALGHPIEFICLD  EPAVCKYCGLRY QDHHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLAEPAVCKYCGLRYVQDHHH 103

[Close]

BLAST of CmaCh20G009410 vs. TrEMBL
Match: A0A0L9V8D8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g198900 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.6e-40
Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASS+ + L+  SS   +S RS SLV++QI  HTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSVLRNLMRFSSSRNTSTRSFSLVTSQISNHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLPEPAICKYCGLRYVQDHHH 103

[Close]

BLAST of CmaCh20G009410 vs. TAIR10
Match: AT3G03070.1 (AT3G03070.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 159.5 bits (402), Expect = 1.1e-39
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQ--------IGQHTAKWMQDTSKKSPMELINE 60
           MAS+L KAL+ S    PSS R+ S+ + Q        +G HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           VPPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]

BLAST of CmaCh20G009410 vs. NCBI nr
Match: gi|659125629|ref|XP_008462784.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS  PSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CmaCh20G009410 vs. NCBI nr
Match: gi|449468271|ref|XP_004151845.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 195.7 bits (496), Expect = 4.1e-47
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS  PSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]

BLAST of CmaCh20G009410 vs. NCBI nr
Match: gi|567901454|ref|XP_006443215.1| (hypothetical protein CICLE_v10023015mg [Citrus clementina])

HSP 1 Score: 176.0 bits (445), Expect = 3.3e-41
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSL K L++SS+  PS+ R+L+ V+NQI +HTAKWMQD SKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLLKTLIKSSN-LPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLD +EPA+CKYCGLRY QDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102

[Close]

BLAST of CmaCh20G009410 vs. NCBI nr
Match: gi|225454793|ref|XP_002276949.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 175.3 bits (443), Expect = 5.7e-41
Identity = 85/103 (82.52%), Postives = 92/103 (89.32%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MAS+LFKAL  S ++ PS++RSL LVS QI  HTAKWMQDTSKKSPMELINEVPPIKVE 
Sbjct: 1   MASNLFKALTTSLNR-PSNSRSLCLVSGQISNHTAKWMQDTSKKSPMELINEVPPIKVEA 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD+NPALGHPIEFICLD +EPAVCKYCGLRY QDHHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLKEPAVCKYCGLRYVQDHHH 102

[Close]

BLAST of CmaCh20G009410 vs. NCBI nr
Match: gi|658054136|ref|XP_008362822.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 174.5 bits (441), Expect = 9.7e-41
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLF+ L+ SS    +  R+ SLV  QI +HTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFRTLIRSSKLGSAGTRNFSLVRTQISEHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD+NPALGHPIEFICLD +EPA+CKYCGLRY QDHHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLDEPAICKYCGLRYVQDHHH 103

The following BLAST results are available for this feature:

BLAST of CmaCh20G009410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUS6_ARATH	2.0e-38	70.27	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidop...	[more]
NDUS6_HUMAN	8.3e-08	41.54	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sap...	[more]
NDUS6_PANTR	8.3e-08	41.54	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan trog...	[more]
NDUS6_PONPY	8.3e-08	41.54	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo py...	[more]
NDUS6_MOUSE	1.8e-07	41.54	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musc...	[more]

BLAST of CmaCh20G009410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNG2_CUCSA	2.8e-47	91.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1	[more]
V4TXJ2_9ROSI	2.3e-41	80.58	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1	[more]
D7T7Q4_VITVI	4.0e-41	82.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02120 PE=4 SV=...	[more]
V7AE46_PHAVU	1.5e-40	79.61	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G020300g PE=4 SV=1	[more]
A0A0L9V8D8_PHAAN	2.6e-40	79.61	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g198900 PE=4 SV=1	[more]

BLAST of CmaCh20G009410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03070.1	1.1e-39	70.27	NADH-ubiquinone oxidoreductase-related	[more]

BLAST of CmaCh20G009410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125629\|ref\|XP_008462784.1\|	1.7e-48	93.20	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449468271\|ref\|XP_004151845.1\|	4.1e-47	91.26	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|567901454\|ref\|XP_006443215.1\|	3.3e-41	80.58	hypothetical protein CICLE_v10023015mg [Citrus clementina]	[more]
gi\|225454793\|ref\|XP_002276949.1\|	5.7e-41	82.52	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|658054136\|ref\|XP_008362822.1\|	9.7e-41	78.64	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019401	Znf_CHCC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G009410.1	CmaCh20G009410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019401	Zinc finger, CHCC-type	GENE3D	G3DSA:2.60.260.40		coord: 49..99 score: 2.9
IPR019401	Zinc finger, CHCC-type	PFAM	PF10276	zf-CHCC	coord: 60..97 score: 4.3
None	No IPR available	PANTHER	PTHR13156	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT	coord: 33..103 score: 1.8
None	No IPR available	PANTHER	PTHR13156:SF0	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 6, MITOCHONDRIAL	coord: 33..103 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G009410	Cucsa.017430	Cucumber (Gy14) v1	cgycmaB0734
CmaCh20G009410	Cla006810	Watermelon (97103) v1	cmawmB535
CmaCh20G009410	Csa2G432800	Cucumber (Chinese Long) v2	cmacuB544
CmaCh20G009410	MELO3C024729	Melon (DHL92) v3.5.1	cmameB493
CmaCh20G009410	ClCG02G007680	Watermelon (Charleston Gray)	cmawcgB484
CmaCh20G009410	CSPI02G27430	Wild cucumber (PI 183967)	cmacpiB549
CmaCh20G009410	CmoCh20G009520	Cucurbita moschata (Rifu)	cmacmoB551
CmaCh20G009410	Lsi10G002260	Bottle gourd (USVL1VR-Ls)	cmalsiB507
CmaCh20G009410	Cp4.1LG16g01640	Cucurbita pepo (Zucchini)	cmacpeB565
CmaCh20G009410	Cp4.1LG05g11970	Cucurbita pepo (Zucchini)	cmacpeB585
CmaCh20G009410	MELO3C024729.2	Melon (DHL92) v3.6.1	cmamedB573
CmaCh20G009410	CsaV3_2G036030	Cucumber (Chinese Long) v3	cmacucB0653
CmaCh20G009410	Cla97C02G034380	Watermelon (97103) v2	cmawmbB571
CmaCh20G009410	Bhi10G001238	Wax gourd	cmawgoB0696
CmaCh20G009410	CsGy2G026860	Cucumber (Gy14) v2	cgybcmaB220
CmaCh20G009410	Carg25473	Silver-seed gourd	carcmaB1308

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G009410	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh20G009410	Cucurbita moschata (Rifu)	cmacmoB554
CmaCh20G009410	Silver-seed gourd	carcmaB1459