Cucsa.017430 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.017430
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Location	scaffold00245 : 150030 .. 154218 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCGTGGTTTTtACTCTAACCTTTCCCCGGCCATAGCTCTTCGCGCTCTCTCTCTCTCTCTCTCTCTCAGCTCAGGTTGTGCGCATCGACGGATCAATGGCGTCGAGTCTGTTCAAAGTGCTTCTTGAATCTTCTTCTAACATCCCATCTTCTACGAGAAATCTGAGTCTTGTTGCCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGTATCCACTAATTTCTCGCTAATCCCCCcTTTCCAAATTTTTACTTCTTCTACGCCCGTGTTTGATTTGATTTCTACAGATTCTGTCTTCTCGTTTACAGTTCCTTATTCTTTCTAACTTTACCTGATAACTGATTTAGAGCTTGGGTCTGAAGGCTCCTTTAATGTTAATGTTGTTTTCTCAAATCGATTGTTATTAAGTGGAAATTAATTCGTGTTATTTTAAGGGAAGAGAAGAGAAGAGAAAGAAGCTTTTTTtCCAGTTTCATTGATGGATGCTAAACCTTTTGGTGGTCATCGTTCACTGAAGCGAATTTATCTAAATTATACAAATATTTTATCTCATTAGCTATCGTGCCCTCCCATCCCTACTTAGACTATGTCTTATCTTCTTCATGTTTTGTGGGTTTTATGTGTACATGAAAATTATCAGAGAATATGCCTTTCAACCTTTAGAAATATTAACTTTTTCATTGATCTTTGAGAAGTTACAAGCTATTGACTTCCTAAAGAATGCATAAAAGTTGAAAAGAGAACTCCTTCAGGTTGTATTCATGCTGCTTGCAGCCTAAGAAAAAAAAaGAGAAGAGCTGTCATGAATGACTAGGTAGTGAACCCCTTAAACAAATGGAAGGTCCTATGACTGTCGATGTTGATTTATAATGGCTTTCATATCTTCTCAATTTTTTTtGAACAAGATACTAGAGGAAATGGATTAGTAGACGCACTAGGATATATCAACTAGATTGACACCTCCATAACATCCTCATCATCTTCCACTCAATTATTATTATTACTATTTGTAAGAAAACAATTTTTATTAAGCTACAGGCCATGAAGAGACAATCCGAGGCAAAAAGGAACTATGACTACTAAAAGAGGTTCATTAAGAACCAAAACTGAAGGAAAATTACAAAGTACATACTGGTACTGGAAGACACTTAGATAGAGGTATTGAAACAAGTCAATCCTCACATCCCCTCCGAAAAATCCTTGACCTTTTAAGAATCCTCCAGTTTCTTTCAAACCAAATGTACCCAAAGCTATAAGCTGCTTGCCTCATAATTTCCCCTTTACCATCAATGCATTTACATCCTCCATTGTTGAATATAAGTCTTGTGTTGAACCAAGTGAACACCAGATTTTGAGATCTATTCCCCcACCCcACACACACAAGATAAGAAACAAATTCTATTGATGTGAAATTTACAAAAGAAGGATGATGGCCAAATCAATAGAGTTACAAATGATTTCTCCAATTGGTCAAATATATCTGACATATTTATTGCCTTGTGACATATTTATAGAGATCTTGCCCTGAATTATTTGCAGAGAGCTTGCTTTTGACTTTCGAGGTGTGTTTTGTGTGGGTATGGCCATATGGTAAAAAGATTGAAACTATGTTTCAGGGTATGCTTTCTCTCTTAATGAGTTTGCAGTTGTTTTTGGAAATTTGCTGTTTGAGGTTTATCTTACTTGATTTCACATTGGAGAACTTGTAATTCACCTATAGGTGTTTGGGATTTTACTCTGTTTTATTCATCAATGAAATTATTTTTTCATCTAAAAAGGAAAGGTTCTCAACTACAAGAATGCATGTTTGACATGAACCTCTGTCTTGTGAATCTCTAGGAAAACATGAGTGAGAGACCGTCAGATTTTTGACGGACCTAGGGTTCCTGTTGAATGTTCTTTCAAACCCAACATTTCATTGCCTTGCAGTGGGAATGTCACAAGTTTGAAGAATTTGTACTTCAAAGGAAACAATTATCTTTGATTTTTCTAACAGTAGTCTAATCTGTTGCACGGTTGCAGCATTTACCGTTCTCATGCATTTGAAGCTTAAATCAACCCTTCAAGTCAGAGAATGTCATTAGCAGAGACTTTATATCACTCTAATGATATGATGGATCCGATCAGCTCTTTGTTGAAATATGAGACTAGAGGACTCTTTGTTGCATAAGATTTTGCACCGTGTCCATTAACTAGGAAGGCTTGAGTCAGTCTAACAGTGGAGATTTTTCCTATCTTCTAAGTTTGTAGCATGTACAATTGTAGATTAATTAAATTAATTTAGATAATTTGGACTGCCTTCAAATGCTCTAGAGTATATGAGAACTATCCACGGTTTTTTATCTTTCTCACAGATCAATTCTTCATAGCCCTCATGCATTTTTCACATTTTCAAGAAGTTTTGAGTTGTGATAGTAGGGTCCCATTCATGTTTTGACAATTGAAAGAACCGTAATTGCTTGGGAAGTCTTCAAGTAGGTTATTCATCAACACCTTCTGTGTTGCTTAACTATTCTTCATGTATTTGCTCGTTGAGTTATCGATCCCTATGCTCAAAGCTGGAAATTAAATTTCTGTTTCCTCATCAGTTACATACTCTGCATTGCAGCTGTCAGTACGTTTTATAACTGCATCAGTTTCAATGGCCTTGTGATTTTTTATTATGCTCTTGGGATTAAGCCAACATTTTTCCTTTAAGGAGATGCTCATTTTCTGCCTTGAGATTTTATCAACAGTGTATTATAACACAAATCAAGCCTCCATACCAGATATCAACATTCTTCCTTTAAGAAGATGCTATTTTTAAGGAAAAGTGAACCAAGTGAGGAATATTCTTTTAGATAATGAGAGGCAAAGTCCAGGAATGTTATGGCTCTACGGCTGTAAGAAAATTTTGGATGCCCAGATGTTAACAAGAAGACAAACGGATAGTAACAAATTTCTGTAATAACCCATACAAGATTGCAATGGACAAGGTTTGGGCGTGGATGTTATCGATTAGAAGTCCTTAAATATAGTTTGTGATATCCCAAACTTCATCCTAATTTGTGGTTCACAACTAATTATTTTGGAACTTAGGTAAACCAAGTTCGATATTTAAAACAATAAAACAATGATATTTGTAACAAAGGACTGTTTTTTAGCCCAAATATTCTTTTTAGCTTGCCTGTCATCTCCCACATTTACAAGTGATATCCCATGGCCTCATTTTGCTTATGGAATATTTTTGTCTTGACCACTGTTCTCTATTGATAATTCATACATTGTTTGACATTTTGAAAGTTGAATTTTCTTTGGCATGACCTCAAAATATTTTGCTTTCCGCCATCTCTATCCTTAAATTATTGAGTGTCTATCAAGTTTTACTGACTGTTGCGATATGTTATAGTTCTTTCTCAATTTATTTCGTTTACTTCTAAGAAATATCCTTCCATTTGTTGGGAATCCGATATTACCCTTTGTGATCCTGTCCAATGCTGAAGGATATATGAGAGTTTTTATTTTATTTCCATCTCTAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTTGCAGGCCGTATCGTTGCTTGTGAGGGAGGTTAGTACCTTAGTGCATCTCCATACTTGTGTCCACGCATGCATACTTTCCAAGTAAATGATTTATTATGGAAGGTATGGTTCCTTATTTGGATTCAAACTCTTGCTGAATGCAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTTGATCGGGAAGAGCCTGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGGCCATCACCACTAGAAAATGTGCAAATGATTATTCCAGCAAGCAACCCAGAACTTGGAAAGACTATCCTACCTCTCTAAACTCAGACTTCTGTAATGGTTTATACTATTGGCTGCATAAATTAGGAATTTAAGAATTCCATTCACTGAGCACTTCGGCCGGTCCATTGTCGTTTGCCAAATTTGTTCTATTGCACTGTCTAGTGAACATATCTTGTTGAGTCTAATACCCAATAAAAGGTTTTAGATCTCTTGGGAGTTGCAAGCTTGAAATTGGACTTTTTATAAGATCACCATTTTTAAGGGCACAAATGTTCATTTGGCTCAGTGGTGTTTGAAATCAAATGAAATTTGTTCTTTCGTACGTAAA

mRNA sequence

TATTCGTGGTTTTTACTCTAACCTTTCCCCGGCCATAGCTCTTCGCGctctctctctctctctctctctcAGCTCAGGTTGTGCGCATCGACGGATCAATGGCGTCGAGTCTGTTCAAAGTGCTTCTTGAATCTTCTTCTAACATCCCATCTTCTACGAGAAATCTGAGTCTTGTTGCCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTTGCAGGCCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTTGATCGGGAAGAGCCTGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGGCCATCACCACTAGAAAATGTGCAAATGATTATTCCAGCAAGCAACCCAGAACTTGGAAAGACTATCCTACCTCTCTAAACTCAGACTTCTGTAATGGTTTATACTATTGGCTGCATAAATTAGGAATTTAAGAATTCCATTCACTGAGCACTTCGGCCGGTCCATTGTCGTTTGCCAAATTTGTTCTATTGCACTGTCTAGTGAACATATCTTGTTGAGTCTAATACCCAATAAAAGGTTTTAGATCTCTTGGGAGTTGCAAGCTTGAAATTGGACTTTTTATAAGATCACCATTTTTAAGGGCACAAATGTTCATTTGGCTCAGTGGTGTTTGAAATCAAATGAAATTTGTTCTTTCGTACGTAAA

Coding sequence (CDS)

ATGGCGTCGAGTCTGTTCAAAGTGCTTCTTGAATCTTCTTCTAACATCCCATCTTCTACGAGAAATCTGAGTCTTGTTGCCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTTGCAGGCCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTTGATCGGGAAGAGCCTGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGGCCATCACCACTAG

Protein sequence

MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH*

Homology

[Close]

BLAST of Cucsa.017430 vs. Swiss-Prot
Match: NDUS6_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.5e-38
Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQ--------IGQHTAKWMQDTSKKSPMELINE 60
           MAS+L K L+ S   +PSS RN S+   Q        +G HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVAGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           VPPIKV GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY Q HHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]

BLAST of Cucsa.017430 vs. Swiss-Prot
Match: NDUS6_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVAGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +V  R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQGHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of Cucsa.017430 vs. Swiss-Prot
Match: NDUS6_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVAGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +V  R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQGHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of Cucsa.017430 vs. Swiss-Prot
Match: NDUS6_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVAGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI E P  +V  R++AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 120

Query: 99  TQGHH 103
            Q HH
Sbjct: 121 RQHHH 124

[Close]

BLAST of Cucsa.017430 vs. Swiss-Prot
Match: NDUS6_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 39  QDTSKKSPMELINEVPPIKVAGRIVACEGDSNPALGHPIEFICLDRE-EPAVCKYCGLRY 98
           ++ ++   ++LI + P  +V  RI+AC+G    ALGHP  +I LD+E +   C YCGL++
Sbjct: 53  KEVNENFAIDLIAQQPVNEVEHRIIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 112

Query: 99  TQGHH 103
            Q HH
Sbjct: 113 KQHHH 116

[Close]

BLAST of Cucsa.017430 vs. TrEMBL
Match: A0A0A0LNG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]

BLAST of Cucsa.017430 vs. TrEMBL
Match: V4TXJ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.3e-43
Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSL K L++S SN+PS+TRNL+ VANQI +HTAKWMQD SKKSPMELINEVPPIKV G
Sbjct: 1   MASSLLKTLIKS-SNLPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGDSNPALGHPIEFICLD +EPA+CKYCGLRY Q HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102

[Close]

BLAST of Cucsa.017430 vs. TrEMBL
Match: V7AE46_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G020300g PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.4e-40
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASS+ + L++ SS+  +STR+ SLVA+QI  HTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 1   MASSVLRNLMKFSSSTNTSTRSFSLVASQISNHTAKWMQDTSKKSPMELINEVPPIKVDG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGD+NPALGHPIEFICLD  EPAVCKYCGLRY Q HHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLAEPAVCKYCGLRYVQDHHH 103

[Close]

BLAST of Cucsa.017430 vs. TrEMBL
Match: W9R6Y3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023521 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.4e-40
Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSL K L+ SS  +   TRNLSLV NQ+G HTAKWMQDTS KSPMELINEVPPIKV G
Sbjct: 1   MASSLMKTLIRSSK-LALGTRNLSLVPNQVGNHTAKWMQDTSMKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGD++PALGHPIEFICLD +EPAVCKYCGLRY Q HHH
Sbjct: 61  RIVACEGDNDPALGHPIEFICLDLKEPAVCKYCGLRYVQDHHH 102

[Close]

BLAST of Cucsa.017430 vs. TrEMBL
Match: M5X1E0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012674mg PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 7.5e-40
Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSLF+ L+ SS    + TRN SLV +QI  HTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 56  MASSLFRTLIRSSKLGSAGTRNFSLVRSQISNHTAKWMQDTSKKSPMELINEVPPIKVEG 115

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGD +PALGHPIEFICLD +EPA+CKYCGLRY Q HHH
Sbjct: 116 RIVACEGDIDPALGHPIEFICLDLDEPAICKYCGLRYVQDHHH 158

[Close]

BLAST of Cucsa.017430 vs. TAIR10
Match: AT3G03070.1 (AT3G03070.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 158.3 bits (399), Expect = 2.6e-39
Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQ--------IGQHTAKWMQDTSKKSPMELINE 60
           MAS+L K L+ S   +PSS RN S+   Q        +G HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVAGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           VPPIKV GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY Q HHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]

BLAST of Cucsa.017430 vs. NCBI nr
Match: gi|449468271|ref|XP_004151845.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 214.9 bits (546), Expect = 6.5e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]

BLAST of Cucsa.017430 vs. NCBI nr
Match: gi|659125629|ref|XP_008462784.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 209.1 bits (531), Expect = 3.6e-51
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSLFK+LLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Cucsa.017430 vs. NCBI nr
Match: gi|567901454|ref|XP_006443215.1| (hypothetical protein CICLE_v10023015mg [Citrus clementina])

HSP 1 Score: 181.0 bits (458), Expect = 1.0e-42
Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSL K L++S SN+PS+TRNL+ VANQI +HTAKWMQD SKKSPMELINEVPPIKV G
Sbjct: 1   MASSLLKTLIKS-SNLPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGDSNPALGHPIEFICLD +EPA+CKYCGLRY Q HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102

[Close]

BLAST of Cucsa.017430 vs. NCBI nr
Match: gi|658054136|ref|XP_008362822.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 174.5 bits (441), Expect = 9.8e-41
Identity = 81/103 (78.64%), Postives = 88/103 (85.44%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSLF+ L+ SS    + TRN SLV  QI +HTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFRTLIRSSKLGSAGTRNFSLVRTQISEHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGD+NPALGHPIEFICLD +EPA+CKYCGLRY Q HHH
Sbjct: 61  RIVACEGDTNPALGHPIEFICLDLDEPAICKYCGLRYVQDHHH 103

[Close]

BLAST of Cucsa.017430 vs. NCBI nr
Match: gi|703105548|ref|XP_010098275.1| (hypothetical protein L484_023521 [Morus notabilis])

HSP 1 Score: 171.8 bits (434), Expect = 6.4e-40
Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = 1


Query: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60
           MASSL K L+ SS  +   TRNLSLV NQ+G HTAKWMQDTS KSPMELINEVPPIKV G
Sbjct: 1   MASSLMKTLIRSSK-LALGTRNLSLVPNQVGNHTAKWMQDTSMKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 104
           RIVACEGD++PALGHPIEFICLD +EPAVCKYCGLRY Q HHH
Sbjct: 61  RIVACEGDNDPALGHPIEFICLDLKEPAVCKYCGLRYVQDHHH 102

The following BLAST results are available for this feature:

BLAST of Cucsa.017430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUS6_ARATH	4.5e-38	69.37	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidop...	[more]
NDUS6_HUMAN	2.1e-06	40.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sap...	[more]
NDUS6_PANTR	2.1e-06	40.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan trog...	[more]
NDUS6_PONPY	2.1e-06	40.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo py...	[more]
NDUS6_MOUSE	4.6e-06	40.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musc...	[more]

BLAST of Cucsa.017430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNG2_CUCSA	4.6e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1	[more]
V4TXJ2_9ROSI	7.3e-43	82.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1	[more]
V7AE46_PHAVU	4.4e-40	78.64	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G020300g PE=4 SV=1	[more]
W9R6Y3_9ROSA	4.4e-40	79.61	Uncharacterized protein OS=Morus notabilis GN=L484_023521 PE=4 SV=1	[more]
M5X1E0_PRUPE	7.5e-40	77.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012674mg PE=4 SV=1	[more]

BLAST of Cucsa.017430 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03070.1	2.6e-39	69.37	NADH-ubiquinone oxidoreductase-related	[more]

BLAST of Cucsa.017430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468271\|ref\|XP_004151845.1\|	6.5e-53	100.00	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|659125629\|ref\|XP_008462784.1\|	3.6e-51	97.09	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|567901454\|ref\|XP_006443215.1\|	1.0e-42	82.52	hypothetical protein CICLE_v10023015mg [Citrus clementina]	[more]
gi\|658054136\|ref\|XP_008362822.1\|	9.8e-41	78.64	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|703105548\|ref\|XP_010098275.1\|	6.4e-40	79.61	hypothetical protein L484_023521 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019401	Znf_CHCC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.017430.1	Cucsa.017430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019401	Zinc finger, CHCC-type	GENE3D	G3DSA:2.60.260.40		coord: 49..99 score: 8.6
IPR019401	Zinc finger, CHCC-type	PFAM	PF10276	zf-CHCC	coord: 60..97 score: 4.3
None	No IPR available	PANTHER	PTHR13156	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT	coord: 33..103 score: 2.4
None	No IPR available	PANTHER	PTHR13156:SF0	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 6, MITOCHONDRIAL	coord: 33..103 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.017430	Cla006810	Watermelon (97103) v1	cgywmB485
Cucsa.017430	Csa2G432800	Cucumber (Chinese Long) v2	cgycuB376
Cucsa.017430	MELO3C024729	Melon (DHL92) v3.5.1	cgymeB440
Cucsa.017430	ClCG02G007680	Watermelon (Charleston Gray)	cgywcgB458
Cucsa.017430	CSPI02G27430	Wild cucumber (PI 183967)	cgycpiB396
Cucsa.017430	CmaCh20G009410	Cucurbita maxima (Rimu)	cgycmaB0734
Cucsa.017430	CmoCh20G009520	Cucurbita moschata (Rifu)	cgycmoB0723
Cucsa.017430	Lsi10G002260	Bottle gourd (USVL1VR-Ls)	cgylsiB424
Cucsa.017430	Cp4.1LG16g01640	Cucurbita pepo (Zucchini)	cgycpeB0689
Cucsa.017430	MELO3C024729.2	Melon (DHL92) v3.6.1	cgymedB435
Cucsa.017430	CsaV3_2G036030	Cucumber (Chinese Long) v3	cgycucB401
Cucsa.017430	Cla97C02G034380	Watermelon (97103) v2	cgywmbB459
Cucsa.017430	Bhi10G001238	Wax gourd	cgywgoB534
Cucsa.017430	Carg25473	Silver-seed gourd	carcgyB1074

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.017430	Silver-seed gourd	carcgyB1169
Cucsa.017430	Cucurbita maxima (Rimu)	cgycmaB0735
Cucsa.017430	Cucurbita moschata (Rifu)	cgycmoB0724
Cucsa.017430	Cucurbita pepo (Zucchini)	cgycpeB0690