Cucsa.017430.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTCGTGGTTTTtACTCTAACCTTTCCCCGGCCATAGCTCTTCGCGCTCTCTCTCTCTCTCTCTCTCTCAGCTCAGGTTGTGCGCATCGACGGATCAATGGCGTCGAGTCTGTTCAAAGTGCTTCTTGAATCTTCTTCTAACATCCCATCTTCTACGAGAAATCTGAGTCTTGTTGCCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGTATCCACTAATTTCTCGCTAATCCCCCcTTTCCAAATTTTTACTTCTTCTACGCCCGTGTTTGATTTGATTTCTACAGATTCTGTCTTCTCGTTTACAGTTCCTTATTCTTTCTAACTTTACCTGATAACTGATTTAGAGCTTGGGTCTGAAGGCTCCTTTAATGTTAATGTTGTTTTCTCAAATCGATTGTTATTAAGTGGAAATTAATTCGTGTTATTTTAAGGGAAGAGAAGAGAAGAGAAAGAAGCTTTTTTtCCAGTTTCATTGATGGATGCTAAACCTTTTGGTGGTCATCGTTCACTGAAGCGAATTTATCTAAATTATACAAATATTTTATCTCATTAGCTATCGTGCCCTCCCATCCCTACTTAGACTATGTCTTATCTTCTTCATGTTTTGTGGGTTTTATGTGTACATGAAAATTATCAGAGAATATGCCTTTCAACCTTTAGAAATATTAACTTTTTCATTGATCTTTGAGAAGTTACAAGCTATTGACTTCCTAAAGAATGCATAAAAGTTGAAAAGAGAACTCCTTCAGGTTGTATTCATGCTGCTTGCAGCCTAAGAAAAAAAAaGAGAAGAGCTGTCATGAATGACTAGGTAGTGAACCCCTTAAACAAATGGAAGGTCCTATGACTGTCGATGTTGATTTATAATGGCTTTCATATCTTCTCAATTTTTTTtGAACAAGATACTAGAGGAAATGGATTAGTAGACGCACTAGGATATATCAACTAGATTGACACCTCCATAACATCCTCATCATCTTCCACTCAATTATTATTATTACTATTTGTAAGAAAACAATTTTTATTAAGCTACAGGCCATGAAGAGACAATCCGAGGCAAAAAGGAACTATGACTACTAAAAGAGGTTCATTAAGAACCAAAACTGAAGGAAAATTACAAAGTACATACTGGTACTGGAAGACACTTAGATAGAGGTATTGAAACAAGTCAATCCTCACATCCCCTCCGAAAAATCCTTGACCTTTTAAGAATCCTCCAGTTTCTTTCAAACCAAATGTACCCAAAGCTATAAGCTGCTTGCCTCATAATTTCCCCTTTACCATCAATGCATTTACATCCTCCATTGTTGAATATAAGTCTTGTGTTGAACCAAGTGAACACCAGATTTTGAGATCTATTCCCCcACCCcACACACACAAGATAAGAAACAAATTCTATTGATGTGAAATTTACAAAAGAAGGATGATGGCCAAATCAATAGAGTTACAAATGATTTCTCCAATTGGTCAAATATATCTGACATATTTATTGCCTTGTGACATATTTATAGAGATCTTGCCCTGAATTATTTGCAGAGAGCTTGCTTTTGACTTTCGAGGTGTGTTTTGTGTGGGTATGGCCATATGGTAAAAAGATTGAAACTATGTTTCAGGGTATGCTTTCTCTCTTAATGAGTTTGCAGTTGTTTTTGGAAATTTGCTGTTTGAGGTTTATCTTACTTGATTTCACATTGGAGAACTTGTAATTCACCTATAGGTGTTTGGGATTTTACTCTGTTTTATTCATCAATGAAATTATTTTTTCATCTAAAAAGGAAAGGTTCTCAACTACAAGAATGCATGTTTGACATGAACCTCTGTCTTGTGAATCTCTAGGAAAACATGAGTGAGAGACCGTCAGATTTTTGACGGACCTAGGGTTCCTGTTGAATGTTCTTTCAAACCCAACATTTCATTGCCTTGCAGTGGGAATGTCACAAGTTTGAAGAATTTGTACTTCAAAGGAAACAATTATCTTTGATTTTTCTAACAGTAGTCTAATCTGTTGCACGGTTGCAGCATTTACCGTTCTCATGCATTTGAAGCTTAAATCAACCCTTCAAGTCAGAGAATGTCATTAGCAGAGACTTTATATCACTCTAATGATATGATGGATCCGATCAGCTCTTTGTTGAAATATGAGACTAGAGGACTCTTTGTTGCATAAGATTTTGCACCGTGTCCATTAACTAGGAAGGCTTGAGTCAGTCTAACAGTGGAGATTTTTCCTATCTTCTAAGTTTGTAGCATGTACAATTGTAGATTAATTAAATTAATTTAGATAATTTGGACTGCCTTCAAATGCTCTAGAGTATATGAGAACTATCCACGGTTTTTTATCTTTCTCACAGATCAATTCTTCATAGCCCTCATGCATTTTTCACATTTTCAAGAAGTTTTGAGTTGTGATAGTAGGGTCCCATTCATGTTTTGACAATTGAAAGAACCGTAATTGCTTGGGAAGTCTTCAAGTAGGTTATTCATCAACACCTTCTGTGTTGCTTAACTATTCTTCATGTATTTGCTCGTTGAGTTATCGATCCCTATGCTCAAAGCTGGAAATTAAATTTCTGTTTCCTCATCAGTTACATACTCTGCATTGCAGCTGTCAGTACGTTTTATAACTGCATCAGTTTCAATGGCCTTGTGATTTTTTATTATGCTCTTGGGATTAAGCCAACATTTTTCCTTTAAGGAGATGCTCATTTTCTGCCTTGAGATTTTATCAACAGTGTATTATAACACAAATCAAGCCTCCATACCAGATATCAACATTCTTCCTTTAAGAAGATGCTATTTTTAAGGAAAAGTGAACCAAGTGAGGAATATTCTTTTAGATAATGAGAGGCAAAGTCCAGGAATGTTATGGCTCTACGGCTGTAAGAAAATTTTGGATGCCCAGATGTTAACAAGAAGACAAACGGATAGTAACAAATTTCTGTAATAACCCATACAAGATTGCAATGGACAAGGTTTGGGCGTGGATGTTATCGATTAGAAGTCCTTAAATATAGTTTGTGATATCCCAAACTTCATCCTAATTTGTGGTTCACAACTAATTATTTTGGAACTTAGGTAAACCAAGTTCGATATTTAAAACAATAAAACAATGATATTTGTAACAAAGGACTGTTTTTTAGCCCAAATATTCTTTTTAGCTTGCCTGTCATCTCCCACATTTACAAGTGATATCCCATGGCCTCATTTTGCTTATGGAATATTTTTGTCTTGACCACTGTTCTCTATTGATAATTCATACATTGTTTGACATTTTGAAAGTTGAATTTTCTTTGGCATGACCTCAAAATATTTTGCTTTCCGCCATCTCTATCCTTAAATTATTGAGTGTCTATCAAGTTTTACTGACTGTTGCGATATGTTATAGTTCTTTCTCAATTTATTTCGTTTACTTCTAAGAAATATCCTTCCATTTGTTGGGAATCCGATATTACCCTTTGTGATCCTGTCCAATGCTGAAGGATATATGAGAGTTTTTATTTTATTTCCATCTCTAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTTGCAGGCCGTATCGTTGCTTGTGAGGGAGGTTAGTACCTTAGTGCATCTCCATACTTGTGTCCACGCATGCATACTTTCCAAGTAAATGATTTATTATGGAAGGTATGGTTCCTTATTTGGATTCAAACTCTTGCTGAATGCAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTTGATCGGGAAGAGCCTGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGGCCATCACCACTAGAAAATGTGCAAATGATTATTCCAGCAAGCAACCCAGAACTTGGAAAGACTATCCTACCTCTCTAAACTCAGACTTCTGTAATGGTTTATACTATTGGCTGCATAAATTAGGAATTTAAGAATTCCATTCACTGAGCACTTCGGCCGGTCCATTGTCGTTTGCCAAATTTGTTCTATTGCACTGTCTAGTGAACATATCTTGTTGAGTCTAATACCCAATAAAAGGTTTTAGATCTCTTGGGAGTTGCAAGCTTGAAATTGGACTTTTTATAAGATCACCATTTTTAAGGGCACAAATGTTCATTTGGCTCAGTGGTGTTTGAAATCAAATGAAATTTGTTCTTTCGTACGTAAA TATTCGTGGTTTTTACTCTAACCTTTCCCCGGCCATAGCTCTTCGCGctctctctctctctctctctctcAGCTCAGGTTGTGCGCATCGACGGATCAATGGCGTCGAGTCTGTTCAAAGTGCTTCTTGAATCTTCTTCTAACATCCCATCTTCTACGAGAAATCTGAGTCTTGTTGCCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTTGCAGGCCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTTGATCGGGAAGAGCCTGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGGCCATCACCACTAGAAAATGTGCAAATGATTATTCCAGCAAGCAACCCAGAACTTGGAAAGACTATCCTACCTCTCTAAACTCAGACTTCTGTAATGGTTTATACTATTGGCTGCATAAATTAGGAATTTAAGAATTCCATTCACTGAGCACTTCGGCCGGTCCATTGTCGTTTGCCAAATTTGTTCTATTGCACTGTCTAGTGAACATATCTTGTTGAGTCTAATACCCAATAAAAGGTTTTAGATCTCTTGGGAGTTGCAAGCTTGAAATTGGACTTTTTATAAGATCACCATTTTTAAGGGCACAAATGTTCATTTGGCTCAGTGGTGTTTGAAATCAAATGAAATTTGTTCTTTCGTACGTAAA ATGGCGTCGAGTCTGTTCAAAGTGCTTCTTGAATCTTCTTCTAACATCCCATCTTCTACGAGAAATCTGAGTCTTGTTGCCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTTGCAGGCCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTTGATCGGGAAGAGCCTGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGGCCATCACCACTAG MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH*
BLAST of Cucsa.017430.1 vs. Swiss-Prot
Match: NDUS6_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 4.5e-38 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. Swiss-Prot
Match: NDUS6_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. Swiss-Prot
Match: NDUS6_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. Swiss-Prot
Match: NDUS6_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. Swiss-Prot
Match: NDUS6_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. TrEMBL
Match: A0A0A0LNG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432800 PE=4 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 4.6e-53 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. TrEMBL
Match: V4TXJ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023015mg PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 7.3e-43 Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. TrEMBL
Match: V7AE46_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G020300g PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 4.4e-40 Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. TrEMBL
Match: W9R6Y3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023521 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 4.4e-40 Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. TrEMBL
Match: M5X1E0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012674mg PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 7.5e-40 Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. TAIR10
Match: AT3G03070.1 (AT3G03070.1 NADH-ubiquinone oxidoreductase-related) HSP 1 Score: 158.3 bits (399), Expect = 2.6e-39 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. NCBI nr
Match: gi|449468271|ref|XP_004151845.1| (PREDICTED: NADH dehydrogenase [ubiquinone]) HSP 1 Score: 214.9 bits (546), Expect = 6.5e-53 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. NCBI nr
Match: gi|659125629|ref|XP_008462784.1| (PREDICTED: NADH dehydrogenase [ubiquinone]) HSP 1 Score: 209.1 bits (531), Expect = 3.6e-51 Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. NCBI nr
Match: gi|567901454|ref|XP_006443215.1| (hypothetical protein CICLE_v10023015mg [Citrus clementina]) HSP 1 Score: 181.0 bits (458), Expect = 1.0e-42 Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. NCBI nr
Match: gi|658054136|ref|XP_008362822.1| (PREDICTED: NADH dehydrogenase [ubiquinone]) HSP 1 Score: 174.5 bits (441), Expect = 9.8e-41 Identity = 81/103 (78.64%), Postives = 88/103 (85.44%), Query Frame = 1
BLAST of Cucsa.017430.1 vs. NCBI nr
Match: gi|703105548|ref|XP_010098275.1| (hypothetical protein L484_023521 [Morus notabilis]) HSP 1 Score: 171.8 bits (434), Expect = 6.4e-40 Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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