Lsi09G017000 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G017000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cysteine-rich protein
Location	chr09 : 25514369 .. 25515547 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTGAATTTATTATAAATTTAAGTTCATTTCATTAGAACTAATTTATTATCGCAAATTGAGAGTTGTATGTAAAAATATACATGCTAGGGCAAGATATATACTTCAACACTAAGAACTATTTATATTCTTATGCTTTGTTGAATAAAATATTACTTTTGTTGAAGATTTTACATTGAAACGAAAAAATACACCGGACAATCTCTATAATATAAATAGACAACTCCTCCTTGGTCAATTAATTTTTAGACAGAACTTCACGTTTTTCTAATACGGTATTGGTTTCAAAGTCCAAGAACCTCCAACGGGTCCTCGTCTAAAAGAAAGGAAAAGAAAAAAAGAGATTTGAGAGCATACCTAAGAATAGTGAACTAAAGAAAATGCACTATCTTGACGGAACATGTTAAAAATTCCACATTAAAACAATACATAGACTACTATTCTCATAATCCGTTAATCAATTGATTTTGAGATGAAATAATGTTTATCTATTTTTTTTTTACAAGGGTCATGGGTTCAGTTCATGGTGGCCACCTATCTAGAATTTAATATCCTACGAGTTTACTTGACACCCAAATGTTGTAGGGTCAGGCAGGTTATCCCGTAAGATTAGTCGAGGTGCATGTAAGTTGGCCCAGACACTCACGGATATAAAAAAAAGTGTTTATCTAATCAACTTTTGAATAAACTTCCAATAAATACATATTTCATACGAATAAAAATGAGTGGAAGGAAAACTTATTTTATGTGTATGATATTTTCCTATGGCTAGTTCACCACGTGTACTATTAATTTGGTTGCACATGAATGGGCCAACCCTTCTTTGTTCTATTAATATGGATCTAAGTTTGCAAGAGAAAATTCTCATAATCTATATTTAGCCATACTAAAATACTATAAAAAGGGATTATTCATCCACTAAAGAAAATACTGTAAAAAGAAAAAAAAAATAACGAAGAAATGGGGAAGAAAATGATTGCAGTGGTTTTGATGTGCATTGTGGTGGTGGCTGCTTTGCAGTTTACCACTGCCAATGCTGAAGACATAGAGGCCAAATTTGATGCTAAATTCAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGCCAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCT

mRNA sequence

ATGGACGGTCAGGCAGGTTATCCCGTAAGATTAGTCGAGGTGCATAAAATGATTGCAGTGGTTTTGATGTGCATTGTGGTGGTGGCTGCTTTGCAGTTTACCACTGCCAATGCTGAAGACATAGAGGCCAAATTTGATGCTAAATTCAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGCCAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCT

Coding sequence (CDS)

ATGGACGGTCAGGCAGGTTATCCCGTAAGATTAGTCGAGGTGCATAAAATGATTGCAGTGGTTTTGATGTGCATTGTGGTGGTGGCTGCTTTGCAGTTTACCACTGCCAATGCTGAAGACATAGAGGCCAAATTTGATGCTAAATTCAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGCCAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCT

Protein sequence

MDGQAGYPVRLVEVHKMIAVVLMCIVVVAALQFTTANAEDIEAKFDAKFKSCYETCEKECLESGNGQSFCEVKCDEDCDEKEVA

Homology

[Close]

BLAST of Lsi09G017000 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-08
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1


Query: 46 DAKFKSCYETCEKECLESGNGQSFCEVKCDEDCDEKEV 84
          +A+FK CY+TC KEC + GNG +FCE+KCD DC  K+V
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDV 39

[Close]

BLAST of Lsi09G017000 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-22
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 15 HKMIAVVLMCIVVVAALQFTTANAEDI---EAKFDAKFKSCYETCEKECLESGNGQSFCE 74
          +KMIA+ LMCIVVVAALQF  AN ED+   EAKFDAK+KSC+ETCEKECL  G+GQS+CE
Sbjct: 3  NKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSYCE 62

Query: 75 VKCDEDCDEKEVA 85
          VKCDEDCDEKE A
Sbjct: 63 VKCDEDCDEKEAA 75

[Close]

BLAST of Lsi09G017000 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-19
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 16 KMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESG-NGQSFC 75
          KM+AV LMCIVVVA LQF  AN ED     EAKFDAK+KSCYETCEKECL +  NG+SFC
Sbjct: 4  KMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGESFC 63

Query: 76 EVKCDEDCDEKEVA 85
          EVKCDEDC EKE A
Sbjct: 64 EVKCDEDCSEKEAA 77

[Close]

BLAST of Lsi09G017000 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.6e-18
Identity = 50/74 (67.57%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 16 KMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESG-NGQSFC 75
          KM+ V+L+CIVV+AAL+F+  N E+     E+KFDAK+K+CYE+CEKECLE+G NGQSFC
Sbjct: 5  KMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSFC 64

Query: 76 EVKCDEDCDEKEVA 85
          EVKCDEDC EKE A
Sbjct: 65 EVKCDEDCGEKESA 78

[Close]

BLAST of Lsi09G017000 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.6e-18
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 16 KMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESG-NGQSFC 75
          KM+ V+L+CIV++A L+F+  N E+     E+KFDA++KSCYE+CEKECL +G NGQS+C
Sbjct: 4  KMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQSYC 63

Query: 76 EVKCDEDCDEKEVA 85
          EVKCDEDCDEKEVA
Sbjct: 64 EVKCDEDCDEKEVA 77

[Close]

BLAST of Lsi09G017000 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 16 KMIAVVLMCIVVVAALQFTTANAE----DIEAKFDAKFKSCYETCEKECLESGNGQSFCE 75
          KM+AV LMCIVVV +LQF TAN E      EAKFDAK+K+C+ TCEKEC+E G+G S+CE
Sbjct: 4  KMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHSYCE 63

Query: 76 VKCDEDCDEKEVA 85
          VKCDEDC  KE A
Sbjct: 64 VKCDEDCGAKEAA 76

[Close]

BLAST of Lsi09G017000 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.8e-22
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 15 HKMIAVVLMCIVVVAALQFTTANAEDI---EAKFDAKFKSCYETCEKECLESGNGQSFCE 74
          +KMIA+ LMCIVVVAALQF  AN ED+   EAKFDAK+KSC+ETCEKECL  G+GQS+CE
Sbjct: 3  NKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSYCE 62

Query: 75 VKCDEDCDEKEVA 85
          VKCDEDCDEKE A
Sbjct: 63 VKCDEDCDEKEAA 75

[Close]

BLAST of Lsi09G017000 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 16 KMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESGNGQSFCE 75
          KMIA+ LMCIVVVAALQF +AN ED     EAKFDAK+KSC++TCEKECLE+G+GQS+CE
Sbjct: 4  KMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQSYCE 63

Query: 76 VKCDEDCDEKEVA 85
          VKCDEDC+EKEVA
Sbjct: 64 VKCDEDCNEKEVA 76

[Close]

BLAST of Lsi09G017000 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-19
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 16 KMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESG-NGQSFC 75
          KM+AV LMCIVVVA LQF  AN ED     EAKFDAK+KSCYETCEKECL +  NG+SFC
Sbjct: 4  KMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGESFC 63

Query: 76 EVKCDEDCDEKEVA 85
          EVKCDEDC EKE A
Sbjct: 64 EVKCDEDCSEKEAA 77

[Close]

BLAST of Lsi09G017000 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-18
Identity = 50/74 (67.57%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 16 KMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESG-NGQSFC 75
          KM+ V+L+CIVV+AAL+F+  N E+     E+KFDAK+K+CYE+CEKECLE+G NGQSFC
Sbjct: 5  KMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSFC 64

Query: 76 EVKCDEDCDEKEVA 85
          EVKCDEDC EKE A
Sbjct: 65 EVKCDEDCGEKESA 78

[Close]

BLAST of Lsi09G017000 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 16 KMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESGNGQSFCE 75
          KM+AV LMCIVVVA LQF TAN ED     EAKFDAK+K+C+  CEKEC+E G G S+CE
Sbjct: 4  KMMAVFLMCIVVVATLQFATANKEDEVANYEAKFDAKYKACFVICEKECVERGGGHSYCE 63

Query: 76 VKCDEDCDEKEVA 85
          VKCDEDC  KE A
Sbjct: 64 VKCDEDCGAKEAA 76

The following BLAST results are available for this feature:

BLAST of Lsi09G017000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALL6_OLEEU	5.2e-08	60.53	Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1	[more]

BLAST of Lsi09G017000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA7_CUCSA	3.4e-22	76.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1	[more]
A0A0A0K9Z9_CUCSA	2.7e-19	74.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1	[more]
A0A0A0KCI6_CUCSA	6.6e-18	67.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1	[more]
A0A0A0KFH6_CUCSA	8.6e-18	64.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1	[more]
A0A0A0KDP7_CUCSA	1.1e-17	67.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1	[more]

BLAST of Lsi09G017000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi09G017000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457470\|ref\|XP_004146471.1\|	4.8e-22	76.71	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|659114221\|ref\|XP_008456958.1\|	1.1e-21	76.71	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
gi\|700191316\|gb\|KGN46520.1\|	3.8e-19	74.32	hypothetical protein Csa_6G106720 [Cucumis sativus]	[more]
gi\|700191315\|gb\|KGN46519.1\|	9.4e-18	67.57	hypothetical protein Csa_6G106710 [Cucumis sativus]	[more]
gi\|659119712\|ref\|XP_008459802.1\|	1.2e-17	68.49	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017000.1	Lsi09G017000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	GENE3D	G3DSA:1.10.287.720		coord: 47..84 score: 8.8
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 52..83 score: 3.4
IPR015333	Pollen allergen ole e 6	unknown	SSF111388	Pollen allergen ole e 6	coord: 46..83 score: 1.14
None	No IPR available	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 12..84 score: 1.8
None	No IPR available	PANTHER	PTHR35632:SF1	SUBFAMILY NOT NAMED	coord: 12..84 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G017000	Csa6G106710	Cucumber (Chinese Long) v2	culsiB396
Lsi09G017000	Csa6G102480	Cucumber (Chinese Long) v2	culsiB402
Lsi09G017000	CSPI06G08360	Wild cucumber (PI 183967)	cpilsiB399
Lsi09G017000	CSPI06G08080	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G017000	Cla006728	Watermelon (97103) v1	lsiwmB036
Lsi09G017000	MELO3C022292	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G017000	ClCG06G002400	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G017000	Cla97C06G111730	Watermelon (97103) v2	lsiwmbB026
Lsi09G017000	Bhi12G001995	Wax gourd	lsiwgoB011
Lsi09G017000	CsGy6G008150	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G017000	CsGy6G008440	Cucumber (Gy14) v2	cgyblsiB362
Lsi09G017000	CsaV3_6G008740	Cucumber (Chinese Long) v3	cuclsiB420
Lsi09G017000	CsaV3_6G008470	Cucumber (Chinese Long) v3	cuclsiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G017000	Cucumber (Gy14) v1	cgylsiB562
Lsi09G017000	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G017000	Cucurbita maxima (Rimu)	cmalsiB814
Lsi09G017000	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G017000	Cucurbita moschata (Rifu)	cmolsiB800
Lsi09G017000	Cucurbita pepo (Zucchini)	cpelsiB101
Lsi09G017000	Cucurbita pepo (Zucchini)	cpelsiB251
Lsi09G017000	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G017000	Silver-seed gourd	carlsiB070
Lsi09G017000	Silver-seed gourd	carlsiB883