CsaV3_6G008740 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G008740
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	major pollen allergen Ole e 6-like
Location	chr6 : 7035886 .. 7036866 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTTCTAAATTTAGCTCCATCATACAATACTATAAAAAGTGATATTATTCATCCACCGAAGAGAAAGCACTTGTAAAAAGGTACAATCCAGAAAAGAGAAAGGAAAATTAAAGAGGAAAATCATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGGTATTGATCTTTCTTCTTTAATTTTTCTATTTGACTCTCTTCTTTTAATAATCATAAGTTTAAGTTTTTCTTTTCATTTTATTAGTAATCGAACATGGTGTCAAATCAAGAAATTAAATCTAATTAATGTTAGAAAACCTTTTAATATCATTTCCTTTCTCAATATTAATTAATTTCCGCCTATTTGATCTTCCACATATTTTCAAGTACATTGTAAGGTGTTGGAACAATCAATTATTTAACATAATATCTTAATATTTATTTAGTTTATATATTCAAACCCTAAGGTTAGGTTTTTCACAAATAAACTATTGGCATAATATTAAATTTATTTTCACCAAATAAAGTTAAAAGAAAAGGTCAATGAGTATAAATTAAAAGATTGCATTATATTTTTAATAATGAAATTGAAATTTGTTGTATTTGTTTTTGCAGATAAGCTTCATATCAACCCAGCAAATTGAGGAAAAATGGAGGATGAAAAGAAAAGAAAATAAGAGAAGAGTCATTATTATTATGAGAGAATTTATGTCAAGAATTATTAACAATATTGTATTATTATATTAAAATAATCTATATAGAGAGGAGCTTAATAAAGGGTTTGAAGAGGAGTTAATCATA

mRNA sequence

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGATAAGCTTCATATCAACCCAGCAAATTGA

Coding sequence (CDS)

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGATAAGCTTCATATCAACCCAGCAAATTGA

Protein sequence

MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSFCEVKCDEDCGEKESADKLHINPAN

Homology

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: KGN46519.1 (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG 60
          MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG
Sbjct: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG 60

Query: 61 QSFCEVKXXEDCGEKESADKLHINPAN 88
          QSFCEVKXXEDCGEKESADKLHINPAN
Sbjct: 61 QSFCEVKXXEDCGEKESADKLHINPAN 87

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: XP_004140522.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46487.1 hypothetical protein Csa_6G102490 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNGQSF 63
          KKMM V L+CIVV+ +L+F+  N +E E       XXXXXXXXXXXX        +G S+
Sbjct: 3  KKMMAVFLMCIVVVTSLQFATAN-KEYEVASYEAKXXXXXXXXXXXXEKECIERGSGHSY 62

Query: 64 CEVKXXEDCGEKESADKLHIN 85
          CEVK  EDCG KE+ADKLHI+
Sbjct: 63 CEVKCDEDCGAKEAADKLHIH 82

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: XP_008459802.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 33/80 (41.25%), Postives = 40/80 (50.00%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNGQSF 63
          KKMM V L+CIVV+A L+F+  N +E E                            G S+
Sbjct: 3  KKMMAVFLMCIVVVATLQFATAN-KEDEVANYEAKFDAKYKACFVICEKECVERGGGHSY 62

Query: 64 CEVKXXEDCGEKESADKLHI 84
          CEVK  EDCG KE+ADKL I
Sbjct: 63 CEVKCDEDCGAKEAADKLGI 81

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: KGN46486.1 (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-04
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKE 32
          KKMMGVLLICIV+MA LEFSIVNGEEKE
Sbjct: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKE 30

[Close]

BLAST of CsaV3_6G008740 vs. TrEMBL
Match: tr|A0A0A0KCI6|A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.2e-21
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG 60
          MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG
Sbjct: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG 60

Query: 61 QSFCEVKXXEDCGEKESADKLHINPAN 88
          QSFCEVKXXEDCGEKESADKLHINPAN
Sbjct: 61 QSFCEVKXXEDCGEKESADKLHINPAN 87

[Close]

BLAST of CsaV3_6G008740 vs. TrEMBL
Match: tr|A0A0A0KDP7|A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNGQSF 63
          KKMM V L+CIVV+ +L+F+  N +E E       XXXXXXXXXXXX        +G S+
Sbjct: 3  KKMMAVFLMCIVVVTSLQFATAN-KEYEVASYEAKXXXXXXXXXXXXEKECIERGSGHSY 62

Query: 64 CEVKXXEDCGEKESADKLHIN 85
          CEVK  EDCG KE+ADKLHI+
Sbjct: 63 CEVKCDEDCGAKEAADKLHIH 82

[Close]

BLAST of CsaV3_6G008740 vs. TrEMBL
Match: tr|A0A1S3CAJ3|A0A1S3CAJ3_CUCME (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103498825 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.4e-05
Identity = 33/80 (41.25%), Postives = 40/80 (50.00%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNGQSF 63
          KKMM V L+CIVV+A L+F+  N +E E                            G S+
Sbjct: 3  KKMMAVFLMCIVVVATLQFATAN-KEDEVANYEAKFDAKYKACFVICEKECVERGGGHSY 62

Query: 64 CEVKXXEDCGEKESADKLHI 84
          CEVK  EDCG KE+ADKL I
Sbjct: 63 CEVKCDEDCGAKEAADKLGI 81

[Close]

BLAST of CsaV3_6G008740 vs. TrEMBL
Match: tr|A0A0A0KFH6|A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.7e-04
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKE 32
          KKMMGVLLICIV+MA LEFSIVNGEEKE
Sbjct: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKE 30

The following BLAST results are available for this feature:

BLAST of CsaV3_6G008740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46519.1	1.1e-20	100.00	hypothetical protein Csa_6G106710 [Cucumis sativus]	[more]
XP_004140522.1	1.7e-05	55.56	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46487.1 hypo...	[more]
XP_008459802.1	1.4e-04	41.25	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
KGN46486.1	7.1e-04	92.86	hypothetical protein Csa_6G102480 [Cucumis sativus]	[more]

BLAST of CsaV3_6G008740 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G008740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G008740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCI6\|A0A0A0KCI6_CUCSA	7.2e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1	[more]
tr\|A0A0A0KDP7\|A0A0A0KDP7_CUCSA	1.1e-05	55.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102490 PE=4 SV=1	[more]
tr\|A0A1S3CAJ3\|A0A1S3CAJ3_CUCME	9.4e-05	41.25	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103498825 PE=4 ...	[more]
tr\|A0A0A0KFH6\|A0A0A0KFH6_CUCSA	4.7e-04	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6
IPR036466	Pollen_allergen_ole-e-6_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G008740.1	CsaV3_6G008740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	G3DSA:1.10.287.720		coord: 38..87 e-value: 1.3E-15 score: 58.6
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	SSF111388	Pollen allergen ole e 6	coord: 39..81
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 45..82 e-value: 8.5E-11 score: 41.5
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G008740	CSPI06G08360	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G008740	CmaCh17G005370	Cucurbita maxima (Rimu)	cmacucB0445
CsaV3_6G008740	CmoCh17G005070	Cucurbita moschata (Rifu)	cmocucB0437
CsaV3_6G008740	Cp4.1LG12g04550	Cucurbita pepo (Zucchini)	cpecucB0176
CsaV3_6G008740	CsGy6G008440	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G008740	Cla006728	Watermelon (97103) v1	cucwmB567
CsaV3_6G008740	MELO3C022292	Melon (DHL92) v3.5.1	cucmeB435
CsaV3_6G008740	ClCG06G002400	Watermelon (Charleston Gray)	cucwcgB504
CsaV3_6G008740	Lsi09G017000	Bottle gourd (USVL1VR-Ls)	cuclsiB420
CsaV3_6G008740	Cla97C06G111730	Watermelon (97103) v2	cucwmbB494
CsaV3_6G008740	Bhi12G001995	Wax gourd	cucwgoB551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G008740	Silver-seed gourd	carcucB0100
CsaV3_6G008740	Cucumber (Gy14) v1	cgycucB159
CsaV3_6G008740	Cucurbita maxima (Rimu)	cmacucB1083
CsaV3_6G008740	Cucurbita moschata (Rifu)	cmocucB1065
CsaV3_6G008740	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G008740	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G008740	Watermelon (97103) v1	cucwmB570
CsaV3_6G008740	Watermelon (97103) v2	cucwmbB487