CmaCh17G005370 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G005370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 4188515 .. 4189199 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAACATTTTAAAGCAAAAAAAAAACACAAAAAAAAACAGAAAAGAACATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGTGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAAAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGGTATGCTCTCTTCCTTTTTAAATCATTTTATTCTCATCATTTTTATTTTCTCTTAATAATTAATTAATTGATTTTGTATTTGTATTTGTTTCTCAGACAAGCTACACATCAAAGTCAAGAACTGAATAATGGAATGCAAAAGAAAGAGGGCTCTTAACAAGGATCTAAGTCATTTAAATGTTTTCATTTATAAATTAATGCAATAAAATTTTCATTAATGGTCACATTTTTTTTTTTAGTTGGGTTAATCTAAACTCTGCTTTTTTGAATTATATGCTCGAATTATATGAAGCTTTCACTACTACAAACTCTCTTTCAAAATCTCTAAAACCTTCTTCTTGAACCGGGATCAGATGCTTGAGCATACGTCGCTTGGCCGTAGGTGATGCGAGAATAAATTGGC

mRNA sequence

AAAAAAAAACATTTTAAAGCAAAAAAAAAACACAAAAAAAAACAGAAAAGAACATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGTGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAAAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGACAAGCTACACATCAAAGTCAAGAACTGAATAATGGAATGCAAAAGAAAGAGGGCTCTTAACAAGGATCTAAGTCATTTAAATGTTTTCATTTATAAATTAATGCAATAAAATTTTCATTAATGGTCACATTTTTTTTTTTAGTTGGGTTAATCTAAACTCTGCTTTTTTGAATTATATGCTCGAATTATATGAAGCTTTCACTACTACAAACTCTCTTTCAAAATCTCTAAAACCTTCTTCTTGAACCGGGATCAGATGCTTGAGCATACGTCGCTTGGCCGTAGGTGATGCGAGAATAAATTGGC

Coding sequence (CDS)

ATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGTGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAAAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGACAAGCTACACATCAAAGTCAAGAACTGA

Protein sequence

MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADKLHIKVKN

Homology

[Close]

BLAST of CmaCh17G005370 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 38 EAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADKL-HIKVKN 86
          EA+++ CY+ C KEC +KGNG +FCE+KCD DC  K+  +KL + K KN
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLENYKPKN 50

[Close]

BLAST of CmaCh17G005370 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-23
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 3  KKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+CIVV+AAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCGEKEAADKLHIKVKN 86
          CEVKCDEDCGEKE+ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]

BLAST of CmaCh17G005370 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-22
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+CIVVV +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCGEKEAADKLHI 82
          +CEVKCDEDCG KEAADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of CmaCh17G005370 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.6e-22
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+CIVVVAALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCGEKEAADKLHIKV 84
          +CEVKCDEDC EKEAADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]

BLAST of CmaCh17G005370 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-21
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 1


Query: 1  MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+AV L+CIVVVA LQ   A E     KYEAKF+AKY+ CYE CEKECL    NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCGEKEAADKLHIKV 84
          SFCEVKCDEDC EKEAADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

[Close]

BLAST of CmaCh17G005370 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-21
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 1  MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+CIV++A L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCGEKEAADKLHIKV 84
          S+CEVKCDEDC EKE ADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]

BLAST of CmaCh17G005370 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-24
Identity = 59/83 (71.08%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 1  MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKMIA+ L+CIVVVAALQ +SA +  + AKYEAKF+AKY+ C++ CEKECLE G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCGEKEAADKLHIKV 84
          +CEVKCDEDC EKE ADKLHI++
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]

BLAST of CmaCh17G005370 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-23
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 3  KKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+CIVV+AAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCGEKEAADKLHIKVKN 86
          CEVKCDEDCGEKE+ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]

BLAST of CmaCh17G005370 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 8.3e-22
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+CIVVV +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCGEKEAADKLHI 82
          +CEVKCDEDCG KEAADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of CmaCh17G005370 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+CIVVVAALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCGEKEAADKLHIKV 84
          +CEVKCDEDC EKEAADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]

BLAST of CmaCh17G005370 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-21
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 1


Query: 1  MAKKMIAVLLVCIVVVAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+AV L+CIVVVA LQ   A E     KYEAKF+AKY+ CYE CEKECL    NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCGEKEAADKLHIKV 84
          SFCEVKCDEDC EKEAADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

The following BLAST results are available for this feature:

BLAST of CmaCh17G005370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALL6_OLEEU	4.0e-08	53.06	Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1	[more]

BLAST of CmaCh17G005370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCI6_CUCSA	1.8e-23	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1	[more]
A0A0A0KDP7_CUCSA	5.8e-22	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1	[more]
A0A0A0KPA7_CUCSA	7.6e-22	69.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1	[more]
A0A0A0K9Z9_CUCSA	1.7e-21	70.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1	[more]
A0A0A0KFH6_CUCSA	1.7e-21	65.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1	[more]

BLAST of CmaCh17G005370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G005370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114221\|ref\|XP_008456958.1\|	6.8e-24	71.08	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
gi\|700191315\|gb\|KGN46519.1\|	2.6e-23	71.43	hypothetical protein Csa_6G106710 [Cucumis sativus]	[more]
gi\|449445523\|ref\|XP_004140522.1\|	8.3e-22	66.67	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|449457470\|ref\|XP_004146471.1\|	1.1e-21	69.88	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|700191316\|gb\|KGN46520.1\|	2.4e-21	70.24	hypothetical protein Csa_6G106720 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G005370.1	CmaCh17G005370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	GENE3D	G3DSA:1.10.287.720		coord: 39..81 score: 4.1
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 44..80 score: 6.0
IPR015333	Pollen allergen ole e 6	unknown	SSF111388	Pollen allergen ole e 6	coord: 38..79 score: 5.1
None	No IPR available	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..85 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G005370	Cla006728	Watermelon (97103) v1	cmawmB351
CmaCh17G005370	Csa6G106710	Cucumber (Chinese Long) v2	cmacuB372
CmaCh17G005370	MELO3C022292	Melon (DHL92) v3.5.1	cmameB313
CmaCh17G005370	ClCG06G002400	Watermelon (Charleston Gray)	cmawcgB328
CmaCh17G005370	CSPI06G08360	Wild cucumber (PI 183967)	cmacpiB376
CmaCh17G005370	CmoCh17G005070	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G005370	CsaV3_6G008740	Cucumber (Chinese Long) v3	cmacucB0445
CmaCh17G005370	Bhi12G001995	Wax gourd	cmawgoB0457

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G005370	Melon (DHL92) v3.6.1	cmamedB365
CmaCh17G005370	Silver-seed gourd	carcmaB0105
CmaCh17G005370	Silver-seed gourd	carcmaB0109
CmaCh17G005370	Watermelon (97103) v2	cmawmbB377
CmaCh17G005370	Cucurbita maxima (Rimu)	cmacmaB386
CmaCh17G005370	Cucurbita maxima (Rimu)	cmacmaB375
CmaCh17G005370	Cucurbita moschata (Rifu)	cmacmoB368
CmaCh17G005370	Cucurbita moschata (Rifu)	cmacmoB378
CmaCh17G005370	Cucurbita pepo (Zucchini)	cmacpeB390
CmaCh17G005370	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G005370	Cucurbita pepo (Zucchini)	cmacpeB381
CmaCh17G005370	Bottle gourd (USVL1VR-Ls)	cmalsiB331
CmaCh17G005370	Cucumber (Gy14) v2	cgybcmaB756