CSPI06G08360 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G08360
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 7051042 .. 7052088 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGTAAAAAGGTACAATCCAGAAAAGAGAAAGGAAAATTAAAGAGGAAAATCATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCTGGTATTGATCTTTCTTCTTTAATTTTTCTATTTGACTATCTCTTTTTAATAATCATAAGTTTAAGTTTTTCTTTTCATTTTATTAGTAATCCAACATGGTGTCAAACGAAGAAATTAAATCAATTTAATGTTTGAAAACCTTTTAATACCATTTCCTTTCTCAATATTAATTAATTTCCTCCTATTTGATCTTTCACGTATTTTCAAGTCTATAAGTATAAATTGTAAACTGTTGGACTAATCAATTATTTAACGTAATACCTTAATATTTATTTAGTTTATATAATCAAACCGTTAGGTTTTTCACAAATAAACTATTGACATAATATTAAATTTATTTTCACCAAATAAAGTTAAAAGAAAAGGTCAATGAGTATAAATTAAAAGATTGCATTATATTTTTAATAATGAAATTGAAATTTGTTGTATTTGTTTTTGCAGATAAGCTTCATATCAACCCAGCAAATTGAGGGAAAATGGAGGATGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAGAGAAGGGTCATTATTATTATGAGAGAATTTATGTCAAGAATTATTAACAATATTGTATTATTATATTAAAATAATCTATATAGAGAGGAGCTTAATAAAGGGTTTGAAGAGGAGTTAATCATAATAAAGTTCCCTTTTTCCCTTTTTACTTTTTTTTTTTCTATTATCTATGTTTTATAATAATAATGTGAATTGAATATTTCAATTTATATAAAAAAAAATCTTTGGTAT

mRNA sequence

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCTGATAAGCTTCATATCAACCCAGCAAATTGA

Coding sequence (CDS)

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCTGATAAGCTTCATATCAACCCAGCAAATTGA

Homology

[Close]

BLAST of CSPI06G08360 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-06
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1


Query: 39 DAKYKTCYESCEKECLENGNNGQSFCEVKCDEDCGEKESADKL 82
          +A++K CY++C KEC + G NG +FCE+KCD DC  K+  +KL
Sbjct: 2  EAQFKECYDTCHKECSDKG-NGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of CSPI06G08360 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG 60
          MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG
Sbjct: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG 60

Query: 61 QSFCEVKCDEDCGEKESADKLHINPAN 88
          QSFCEVKCDEDCGEKESADKLHINPAN
Sbjct: 61 QSFCEVKCDEDCGEKESADKLHINPAN 87

[Close]

BLAST of CSPI06G08360 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-33
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMMGVLLICIV+MA LEFSIVNGEEKEDKYESKFDA+YK+CYESCEKECL NG NGQS+
Sbjct: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQSY 62

Query: 64 CEVKCDEDCGEKESADKLHI 84
          CEVKCDEDC EKE ADKLH+
Sbjct: 63 CEVKCDEDCDEKEVADKLHV 82

[Close]

BLAST of CSPI06G08360 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-25
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMM V L+CIVV+A L+F + N E+   KYE+KFDAKYK+CYE+CEKECL N  NG+SF
Sbjct: 3  KKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGESF 62

Query: 64 CEVKCDEDCGEKESADKLHI 84
          CEVKCDEDC EKE+ADKLHI
Sbjct: 63 CEVKCDEDCSEKEAADKLHI 82

[Close]

BLAST of CSPI06G08360 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-21
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMM V L+CIVV+ +L+F+  N E +   YE+KFDAKYK C+ +CEKEC+E G +G S+
Sbjct: 3  KKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERG-SGHSY 62

Query: 64 CEVKCDEDCGEKESADKLHIN 85
          CEVKCDEDCG KE+ADKLHI+
Sbjct: 63 CEVKCDEDCGAKEAADKLHIH 82

[Close]

BLAST of CSPI06G08360 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 5  KMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSFC 64
          KM+ + L+CIVV+AAL+F+  N E+   KYE+KFDAKYK+C+E+CEKECL  G+ GQS+C
Sbjct: 4  KMIALFLMCIVVVAALQFANANKEDVA-KYEAKFDAKYKSCFETCEKECLRYGS-GQSYC 63

Query: 65 EVKCDEDCGEKESADKLHI 84
          EVKCDEDC EKE+ADKLHI
Sbjct: 64 EVKCDEDCDEKEAADKLHI 80

[Close]

BLAST of CSPI06G08360 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG 60
          MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG
Sbjct: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG 60

Query: 61 QSFCEVKCDEDCGEKESADKLHINPAN 88
          QSFCEVKCDEDCGEKESADKLHINPAN
Sbjct: 61 QSFCEVKCDEDCGEKESADKLHINPAN 87

[Close]

BLAST of CSPI06G08360 vs. NCBI nr
Match: gi|700191282|gb|KGN46486.1| (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.7e-33
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMMGVLLICIV+MA LEFSIVNGEEKEDKYESKFDA+YK+CYESCEKECL NG NGQS+
Sbjct: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQSY 62

Query: 64 CEVKCDEDCGEKESADKLHI 84
          CEVKCDEDC EKE ADKLH+
Sbjct: 63 CEVKCDEDCDEKEVADKLHV 82

[Close]

BLAST of CSPI06G08360 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMM V L+CIVV+A L+F + N E+   KYE+KFDAKYK+CYE+CEKECL N  NG+SF
Sbjct: 3  KKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGESF 62

Query: 64 CEVKCDEDCGEKESADKLHI 84
          CEVKCDEDC EKE+ADKLHI
Sbjct: 63 CEVKCDEDCSEKEAADKLHI 82

[Close]

BLAST of CSPI06G08360 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 55/80 (68.75%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKM+ + L+CIVV+AAL+F+  N E++  KYE+KFDAKYK+C+++CEKECLENG +GQS+
Sbjct: 3  KKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENG-SGQSY 62

Query: 64 CEVKCDEDCGEKESADKLHI 84
          CEVKCDEDC EKE ADKLHI
Sbjct: 63 CEVKCDEDCNEKEVADKLHI 81

[Close]

BLAST of CSPI06G08360 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-21
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMM V L+CIVV+ +L+F+  N E +   YE+KFDAKYK C+ +CEKEC+E G +G S+
Sbjct: 3  KKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERG-SGHSY 62

Query: 64 CEVKCDEDCGEKESADKLHIN 85
          CEVKCDEDCG KE+ADKLHI+
Sbjct: 63 CEVKCDEDCGAKEAADKLHIH 82

The following BLAST results are available for this feature:

BLAST of CSPI06G08360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALL6_OLEEU	2.3e-06	51.16	Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1	[more]

BLAST of CSPI06G08360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCI6_CUCSA	3.1e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1	[more]
A0A0A0KFH6_CUCSA	2.6e-33	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1	[more]
A0A0A0K9Z9_CUCSA	2.0e-25	71.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1	[more]
A0A0A0KDP7_CUCSA	5.1e-21	62.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1	[more]
A0A0A0KPA7_CUCSA	1.5e-20	67.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1	[more]

BLAST of CSPI06G08360 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G08360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191315\|gb\|KGN46519.1\|	4.4e-42	100.00	hypothetical protein Csa_6G106710 [Cucumis sativus]	[more]
gi\|700191282\|gb\|KGN46486.1\|	3.7e-33	87.50	hypothetical protein Csa_6G102480 [Cucumis sativus]	[more]
gi\|700191316\|gb\|KGN46520.1\|	2.9e-25	71.25	hypothetical protein Csa_6G106720 [Cucumis sativus]	[more]
gi\|659114221\|ref\|XP_008456958.1\|	2.7e-23	68.75	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
gi\|449445523\|ref\|XP_004140522.1\|	7.3e-21	62.96	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G08360.1	CSPI06G08360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	GENE3D	G3DSA:1.10.287.720		coord: 40..82 score: 4.0
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 45..82 score: 8.3
IPR015333	Pollen allergen ole e 6	unknown	SSF111388	Pollen allergen ole e 6	coord: 39..81 score: 3.79
None	No IPR available	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..87 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G08360	Cla006728	Watermelon (97103) v1	cpiwmB561
CSPI06G08360	Csa6G106710	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G08360	MELO3C022292	Melon (DHL92) v3.5.1	cpimeB423
CSPI06G08360	ClCG06G002400	Watermelon (Charleston Gray)	cpiwcgB509
CSPI06G08360	Lsi09G017000	Bottle gourd (USVL1VR-Ls)	cpilsiB399
CSPI06G08360	CsaV3_6G008740	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G08360	Cla97C06G111730	Watermelon (97103) v2	cpiwmbB501
CSPI06G08360	Bhi12G001995	Wax gourd	cpiwgoB539
CSPI06G08360	CmaCh17G005370	Cucurbita maxima (Rimu)	cmacpiB376
CSPI06G08360	CmoCh17G005070	Cucurbita moschata (Rifu)	cmocpiB365
CSPI06G08360	Cp4.1LG12g04550	Cucurbita pepo (Zucchini)	cpecpiB154
CSPI06G08360	CsGy6G008440	Cucumber (Gy14) v2	cgybcpiB288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G08360	Cucumber (Gy14) v1	cgycpiB156
CSPI06G08360	Cucurbita maxima (Rimu)	cmacpiB932
CSPI06G08360	Cucurbita moschata (Rifu)	cmocpiB911
CSPI06G08360	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G08360	Watermelon (97103) v1	cpiwmB563
CSPI06G08360	Cucurbita pepo (Zucchini)	cpecpiB332
CSPI06G08360	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G08360	Silver-seed gourd	carcpiB0097
CSPI06G08360	Watermelon (97103) v2	cpiwmbB495