CsGy6G008440 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G008440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Major pollen allergen Ole e 6
Location	Chr6 : 7054765 .. 7055724 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGGTATTGATCTTTCTTCTTTAATTTTTCTATTTGACTCTCTTCTTTTAATAATCATAAGTTTAAGTTTTTCTTTTCATTTTATTAGTAATCGAACATGGTGTCAAATCAAGAAATTAAATCTAATTAATGTTAGAAAACCTTTTAATATCATTTCCTTTCTCAATATTAATTAATTTCCGCCTATTTGATCTTCCACATATTTTCAAGTACATTGTAAGGTGTTGGAACAATCAATTATTTAACATAATATCTTAATATTTATTTAGTTTATATATTCAAACCCTAAGGTTAGGTTTTTCACAAATAAACTATTGGCATAATATTAAATTTATTTTCACCAAATAAAGTTAAAAGAAAAGGTCAATGAGTATAAATTAAAAGATTGCATTATATTTTTAATAATGAAATTGAAATTTGTTGTATTTGTTTTTGCAGATAAGCTTCATATCAACCCAGCAAATTGAGGAAAAATGGAGGATGAAAAGAAAAGAAAATAAGAGAAGAGTCATTATTATTATGAGAGAATTTATGTCAAGAATTATTAACAATATTGTATTATTATATTAAAATAATCTATATAGAGAGGAGCTTAATAAAGGTTTGAAGAGGAGTTAATCATAATAAAGTTACCTTTTTCCCTTTTTACTTTTTTTTTCCTATTATCTATGTTTTATAATAATAATGTGAATTGAATATTTCAATTTATATATAAAAAAAAATCTTTG

mRNA sequence

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGATAAGCTTCATATCAACCCAGCAAATTGAGGAAAAATGGAGGATGAAAAGAAAAGAAAATAAGAGAAGAGTCATTATTATTATGAGAGAATTTATGTCAAGAATTATTAACAATATTGTATTATTATATTAAAATAATCTATATAGAGAGGAGCTTAATAAAGGTTTGAAGAGGAGTTAATCATAATAAAGTTACCTTTTTCCCTTTTTACTTTTTTTTTCCTATTATCTATGTTTTATAATAATAATGTGAATTGAATATTTCAATTTATATATAAAAAAAAATCTTTG

Coding sequence (CDS)

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGATAAGCTTCATATCAACCCAGCAAATTGA

Protein sequence

MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSFCEVKCDEDCGEKESADKLHINPAN

Homology

[Close]

BLAST of CsGy6G008440 vs. NCBI nr
Match: KGN46519.1 (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG 60
          MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG
Sbjct: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG 60

Query: 61 QSFCEVKXXEDCGEKESADKLHINPAN 88
          QSFCEVKXXEDCGEKESADKLHINPAN
Sbjct: 61 QSFCEVKXXEDCGEKESADKLHINPAN 87

[Close]

BLAST of CsGy6G008440 vs. NCBI nr
Match: XP_004140522.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46487.1 hypothetical protein Csa_6G102490 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNGQSF 63
          KKMM V L+CIVV+ +L+F+  N +E E       XXXXXXXXXXXX        +G S+
Sbjct: 3  KKMMAVFLMCIVVVTSLQFATAN-KEYEVASYEAKXXXXXXXXXXXXEKECIERGSGHSY 62

Query: 64 CEVKXXEDCGEKESADKLHIN 85
          CEVK  EDCG KE+ADKLHI+
Sbjct: 63 CEVKCDEDCGAKEAADKLHIH 82

[Close]

BLAST of CsGy6G008440 vs. NCBI nr
Match: XP_008459802.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 33/80 (41.25%), Postives = 40/80 (50.00%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNGQSF 63
          KKMM V L+CIVV+A L+F+  N +E E                            G S+
Sbjct: 3  KKMMAVFLMCIVVVATLQFATAN-KEDEVANYEAKFDAKYKACFVICEKECVERGGGHSY 62

Query: 64 CEVKXXEDCGEKESADKLHI 84
          CEVK  EDCG KE+ADKL I
Sbjct: 63 CEVKCDEDCGAKEAADKLGI 81

[Close]

BLAST of CsGy6G008440 vs. NCBI nr
Match: KGN46486.1 (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-04
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKE 32
          KKMMGVLLICIV+MA LEFSIVNGEEKE
Sbjct: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKE 30

[Close]

BLAST of CsGy6G008440 vs. TrEMBL
Match: tr|A0A0A0KCI6|A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG 60
          MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG
Sbjct: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNG 60

Query: 61 QSFCEVKXXEDCGEKESADKLHINPAN 88
          QSFCEVKXXEDCGEKESADKLHINPAN
Sbjct: 61 QSFCEVKXXEDCGEKESADKLHINPAN 87

[Close]

BLAST of CsGy6G008440 vs. TrEMBL
Match: tr|A0A0A0KDP7|A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-05
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNGQSF 63
          KKMM V L+CIVV+ +L+F+  N +E E       XXXXXXXXXXXX        +G S+
Sbjct: 3  KKMMAVFLMCIVVVTSLQFATAN-KEYEVASYEAKXXXXXXXXXXXXEKECIERGSGHSY 62

Query: 64 CEVKXXEDCGEKESADKLHIN 85
          CEVK  EDCG KE+ADKLHI+
Sbjct: 63 CEVKCDEDCGAKEAADKLHIH 82

[Close]

BLAST of CsGy6G008440 vs. TrEMBL
Match: tr|A0A1S3CAJ3|A0A1S3CAJ3_CUCME (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103498825 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 33/80 (41.25%), Postives = 40/80 (50.00%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXNNGQSF 63
          KKMM V L+CIVV+A L+F+  N +E E                            G S+
Sbjct: 3  KKMMAVFLMCIVVVATLQFATAN-KEDEVANYEAKFDAKYKACFVICEKECVERGGGHSY 62

Query: 64 CEVKXXEDCGEKESADKLHI 84
          CEVK  EDCG KE+ADKL I
Sbjct: 63 CEVKCDEDCGAKEAADKLGI 81

[Close]

BLAST of CsGy6G008440 vs. TrEMBL
Match: tr|A0A0A0KFH6|A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.6e-04
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKE 32
          KKMMGVLLICIV+MA LEFSIVNGEEKE
Sbjct: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKE 30

The following BLAST results are available for this feature:

BLAST of CsGy6G008440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46519.1	1.8e-20	100.00	hypothetical protein Csa_6G106710 [Cucumis sativus]	[more]
XP_004140522.1	2.2e-05	55.56	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46487.1 hypo...	[more]
XP_008459802.1	1.8e-04	41.25	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
KGN46486.1	7.0e-04	92.86	hypothetical protein Csa_6G102480 [Cucumis sativus]	[more]

BLAST of CsGy6G008440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G008440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G008440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCI6\|A0A0A0KCI6_CUCSA	1.2e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1	[more]
tr\|A0A0A0KDP7\|A0A0A0KDP7_CUCSA	1.4e-05	55.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102490 PE=4 SV=1	[more]
tr\|A0A1S3CAJ3\|A0A1S3CAJ3_CUCME	1.2e-04	41.25	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103498825 PE=4 ...	[more]
tr\|A0A0A0KFH6\|A0A0A0KFH6_CUCSA	4.6e-04	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6
IPR036466	Pollen_allergen_ole-e-6_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G008440.1	CsGy6G008440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	G3DSA:1.10.287.720		coord: 38..87 e-value: 1.3E-15 score: 58.6
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	SSF111388	Pollen allergen ole e 6	coord: 39..81
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 45..82 e-value: 8.5E-11 score: 41.5
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G008440	Cla006728	Watermelon (97103) v1	cgybwmB505
CsGy6G008440	Csa6G106710	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G008440	MELO3C022292	Melon (DHL92) v3.5.1	cgybmeB371
CsGy6G008440	ClCG06G002400	Watermelon (Charleston Gray)	cgybwcgB445
CsGy6G008440	CSPI06G08360	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G008440	CmaCh17G005400	Cucurbita maxima (Rimu)	cgybcmaB756
CsGy6G008440	Lsi09G017000	Bottle gourd (USVL1VR-Ls)	cgyblsiB362
CsGy6G008440	CsaV3_6G008740	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G008440	Cla97C06G111730	Watermelon (97103) v2	cgybwmbB453
CsGy6G008440	Bhi12G001995	Wax gourd	cgybwgoB511

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G008440	Cucurbita pepo (Zucchini)	cgybcpeB732
CsGy6G008440	Bottle gourd (USVL1VR-Ls)	cgyblsiB366
CsGy6G008440	Watermelon (Charleston Gray)	cgybwcgB438
CsGy6G008440	Watermelon (97103) v1	cgybwmB509
CsGy6G008440	Watermelon (97103) v2	cgybwmbB446