CmaCh17G005400 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G005400
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 4282616 .. 4283205 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAAGCATTGTAAAGGCACAAGAAAAAGCATAAAATAAAATAAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGATGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAGAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGGTATGCTCTCTTCCTTTTTAAATCATTTTATTCTCATCATTTTTATTTTCTCTTAATAATTAATTAATTGATTTTGTATTTGTATTTGTTTCTCAGATAAGCTACACATCAAGGTGAAGAACTAAATAATGGAATGCAAAAGAAAGAGGTCCTTGAGAAGGATCTAAGTAATAATTGTATTCGAGTTAAAGCTTGTAAGATGGAGTTTGATAAACTTTCTTTCTCCTCCATTTCTTGAGAATGTGATATATGCGATGAATGTTACCTCTTTTAAGAGTTATTTGTTTCGTTCAACACCAATATTAAGAGTAG

mRNA sequence

AAAAAGAAGCATTGTAAAGGCACAAGAAAAAGCATAAAATAAAATAAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGATGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAGAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGATAAGCTACACATCAAGGTGAAGAACTAAATAATGGAATGCAAAAGAAAGAGGTCCTTGAGAAGGATCTAAGTAATAATTGTATTCGAGTTAAAGCTTGTAAGATGGAGTTTGATAAACTTTCTTTCTCCTCCATTTCTTGAGAATGTGATATATGCGATGAATGTTACCTCTTTTAAGAGTTATTTGTTTCGTTCAACACCAATATTAAGAGTAG

Coding sequence (CDS)

ATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGATGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAGAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGATAAGCTACACATCAAGGTGAAGAACTAA

Protein sequence

MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADKLHIKVKN
Homology
[Close]
BLAST of CmaCh17G005400 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 38 EAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADKL-HIKVKN 86
          EA+++ CY+ C KEC +KGNG +FCE+KCD DC  K+  +KL + K KN
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLENYKPKN 50

[Close]
BLAST of CmaCh17G005400 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.7e-24
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 3  KKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+CIVVMAAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCGEKEAADKLHIKVKN 86
          CEVKCDEDCGEKE+ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]
BLAST of CmaCh17G005400 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-22
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+CIV+MA L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCGEKEAADKLHIKV 84
          S+CEVKCDEDC EKE ADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of CmaCh17G005400 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-21
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+CIVV+ +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCGEKEAADKLHI 82
          +CEVKCDEDCG KEAADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of CmaCh17G005400 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-21
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+CIVV+AALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCGEKEAADKLHIKV 84
          +CEVKCDEDC EKEAADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of CmaCh17G005400 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.8e-21
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+AV L+CIVV+A LQ   A E     KYEAKF+AKY+ CYE CEKECL    NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCGEKEAADKLHIKV 84
          SFCEVKCDEDC EKEAADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

[Close]
BLAST of CmaCh17G005400 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-24
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 3  KKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+CIVVMAAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCGEKEAADKLHIKVKN 86
          CEVKCDEDCGEKE+ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]
BLAST of CmaCh17G005400 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-23
Identity = 58/83 (69.88%), Postives = 72/83 (86.75%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKMIA+ L+CIVV+AALQ +SA +  + AKYEAKF+AKY+ C++ CEKECLE G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCGEKEAADKLHIKV 84
          +CEVKCDEDC EKE ADKLHI++
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]
BLAST of CmaCh17G005400 vs. NCBI nr
Match: gi|700191282|gb|KGN46486.1| (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 8.3e-22
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+CIV+MA L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCGEKEAADKLHIKV 84
          S+CEVKCDEDC EKE ADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of CmaCh17G005400 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+CIVV+ +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCGEKEAADKLHI 82
          +CEVKCDEDCG KEAADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of CmaCh17G005400 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+CIVV+AALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCGEKEAADKLHIKV 84
          +CEVKCDEDC EKEAADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

The following BLAST results are available for this feature:
BLAST of CmaCh17G005400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALL6_OLEEU4.0e-0853.06Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1[more]
BLAST of CmaCh17G005400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCI6_CUCSA4.7e-2472.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
A0A0A0KFH6_CUCSA5.8e-2266.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0KDP7_CUCSA1.3e-2165.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
A0A0A0KPA7_CUCSA1.3e-2168.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA3.8e-2169.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
BLAST of CmaCh17G005400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G005400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191315|gb|KGN46519.1|6.8e-2472.62hypothetical protein Csa_6G106710 [Cucumis sativus][more]
gi|659114221|ref|XP_008456958.1|1.5e-2369.88PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|700191282|gb|KGN46486.1|8.3e-2266.67hypothetical protein Csa_6G102480 [Cucumis sativus][more]
gi|449445523|ref|XP_004140522.1|1.9e-2165.43PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|449457470|ref|XP_004146471.1|1.9e-2168.67PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G005400.1CmaCh17G005400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 39..81
score: 4.1
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 44..80
score: 6.0
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 38..79
score: 5.1
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..85
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G005400Lsi09G017010Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G005400Cla97C06G111740Watermelon (97103) v2cmawmbB377
CmaCh17G005400CsGy6G008440Cucumber (Gy14) v2cgybcmaB756
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G005400Silver-seed gourdcarcmaB0105
CmaCh17G005400Silver-seed gourdcarcmaB0109
CmaCh17G005400Wax gourdcmawgoB0457
CmaCh17G005400Cucurbita maxima (Rimu)cmacmaB386
CmaCh17G005400Cucurbita maxima (Rimu)cmacmaB375
CmaCh17G005400Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G005400Cucurbita moschata (Rifu)cmacmoB368
CmaCh17G005400Cucurbita moschata (Rifu)cmacmoB378
CmaCh17G005400Melon (DHL92) v3.5.1cmameB313
CmaCh17G005400Watermelon (Charleston Gray)cmawcgB328
CmaCh17G005400Watermelon (97103) v1cmawmB351
CmaCh17G005400Cucurbita pepo (Zucchini)cmacpeB390
CmaCh17G005400Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G005400Cucurbita pepo (Zucchini)cmacpeB381
CmaCh17G005400Melon (DHL92) v3.6.1cmamedB365