Cla97C06G111740 (gene) Watermelon (97103) v2

Overview
NameCla97C06G111740
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionmajor pollen allergen Ole e 6-like
LocationCla97Chr06 : 2521611 .. 2522935 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGAAGAAAATGATTGCAATGTTTCTAATGTGCATTGTGGTGGTGGCTGCTTTGCAATTTTCCACTGCCAATGGAGAGGAGAAAGTGGACAAATATGAAGCCAAATTTGAGGCCAAATACAAATCTTGCTATCAAACTTGTGAGAAGGAATGCCTTCACACTGGTAATGGCCAAAGTTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAACAAACTGCTGGTACTCACCTCTCTCTTTTTCCAATAACTTATCATTTCTTTACATATAAATTCGAGTGTTTCCACGTTTAATTATATGAGTTGTTTTCAAACATCGTAAAATAAGTCGAAATATTTATAAATATAACAAAATATCATATTTGAGATGATACTGTCTATTAATAACATTTTGCCATATTTATAAATATTTTGAGTAATTTTTATCATTTTAAACAATTATTCCAATTATATAATCATTAAAAATTTGATATTATATAATAAAAATACAGAAACTTACAATTTGTTTAAAATTTTTCTTAAATGGGCGTATTTGGTTAGAAATCTAGATTTATGTTTTTAGTGTATTCACTCAGATTTTAAGATGAAAAATTGTAAAAATTTTAAAATAAAAAATAAAATCTAGTATTTTAGGTTATAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAATTAAAATATGTATCAGGTATTTTATTATAAATTATATAATAATACAAAATAATAAAAAAAATTATTATAGATATAGAAAAAAATATCAAACTATTTACAAATATAACAAAATTTTACTTTCTATATGTGAAAATTTTACATTTTACGTGTGATAAACCGTTTATCACTATAGATGATAGAAAGTAAAATTTTGTTATATTTGTAATATTTTCAATAGTTTTTCTATTTTTGAAACATCTCAAATAATAATCATTCAATTTTTTTTTTTTTTTGAAATATTACTAAAGGTCGAGGGATCAGTAGGCACACCTAGATATCTCAACTAGGGTGACACATTCTTAGTGCTCTCATCACGTCCCGACCCAAAAAGATATATTGATATGGAAATAGAGAATGTACACAAAGATTTAATTAAGATATTCATAAATCAATTAATAATACTTTATACTATATTTAAAATTTAGTGGATAATTAGGACTAATTAAAAAATAATTATTTAATTTAGCCAAACATATCTATGAAAAACATGAAATAGAATTCTTTGTTTGAAAACTAATAAATAATTACTATCTCATATTAACTAAATTGTTGGGTTTGTTTTACAGATAAGCTGCACATCAACTTGCCTTGA

mRNA sequence

ATGGGGAAGAAGAAAATGATTGCAATGTTTCTAATGTGCATTGTGGTGGTGGCTGCTTTGCAATTTTCCACTGCCAATGGAGAGGAGAAAGTGGACAAATATGAAGCCAAATTTGAGGCCAAATACAAATCTTGCTATCAAACTTGTGAGAAGGAATGCCTTCACACTGGTAATGGCCAAAGTTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAACAAACTGCTGATAAGCTGCACATCAACTTGCCTTGA

Coding sequence (CDS)

ATGGGGAAGAAGAAAATGATTGCAATGTTTCTAATGTGCATTGTGGTGGTGGCTGCTTTGCAATTTTCCACTGCCAATGGAGAGGAGAAAGTGGACAAATATGAAGCCAAATTTGAGGCCAAATACAAATCTTGCTATCAAACTTGTGAGAAGGAATGCCTTCACACTGGTAATGGCCAAAGTTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAACAAACTGCTGATAAGCTGCACATCAACTTGCCTTGA

Protein sequence

MGKKKMIAMFLMCIVVVAALQFSTANGEEKVDKYEAKFEAKYKSCYQTCEKECLHTGNGQSFCEVKCDEDCDEKQTADKLHINLP
Homology
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BLAST of Cla97C06G111740 vs. TrEMBL
Match: tr|A0A1S3C530|A0A1S3C530_CUCME (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.7e-04
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 0 

Query: 4  KKMIAMFLMCIVVVAALQFSTANGEEKVDKYEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 63
          KKMIA+FLMCIVVVAALQF++AN E++V KY XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 3  KKMIALFLMCIVVVAALQFASANKEDEVAKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64 XXXXXXXXXXKQTADKLHINL 85
          XXXXXXXXXXK+ ADKLHI L
Sbjct: 63 XXXXXXXXXXKEVADKLHIEL 83

The following BLAST results are available for this feature:
BLAST of Cla97C06G111740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C06G111740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C530|A0A1S3C530_CUCME7.7e-0486.42major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ... [more]
BLAST of Cla97C06G111740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C06G111740 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036466Pollen_allergen_ole-e-6_sf
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0051213 dioxygenase activity
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G111740.1Cla97C06G111740.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 45..81
e-value: 8.1E-13
score: 48.0
IPR015333Pollen allergen ole e 6PANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..81
IPR036466Pollen allergen ole e 6 superfamilyGENE3DG3DSA:1.10.287.720coord: 38..84
e-value: 3.2E-17
score: 63.8
IPR036466Pollen allergen ole e 6 superfamilySUPERFAMILYSSF111388Pollen allergen ole e 6coord: 39..80

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G111740CmaCh17G005400Cucurbita maxima (Rimu)cmawmbB377
Cla97C06G111740MELO3C022291.2Melon (DHL92) v3.6.1medwmbB118
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G111740Cucumber (Chinese Long) v2cuwmbB468
Cla97C06G111740Cucumber (Chinese Long) v2cuwmbB474
Cla97C06G111740Bottle gourd (USVL1VR-Ls)lsiwmbB026
Cla97C06G111740Melon (DHL92) v3.5.1mewmbB127
Cla97C06G111740Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G111740Watermelon (97103) v1wmwmbB408
Cla97C06G111740Wax gourdwgowmbB094
Cla97C06G111740Silver-seed gourdcarwmbB0078
Cla97C06G111740Silver-seed gourdcarwmbB1018
Cla97C06G111740Cucumber (Gy14) v2cgybwmbB446
Cla97C06G111740Cucumber (Gy14) v2cgybwmbB453
Cla97C06G111740Cucumber (Gy14) v1cgywmbB596
Cla97C06G111740Cucurbita maxima (Rimu)cmawmbB924
Cla97C06G111740Cucurbita moschata (Rifu)cmowmbB361
Cla97C06G111740Cucurbita moschata (Rifu)cmowmbB899
Cla97C06G111740Wild cucumber (PI 183967)cpiwmbB495
Cla97C06G111740Wild cucumber (PI 183967)cpiwmbB501
Cla97C06G111740Cucumber (Chinese Long) v3cucwmbB487
Cla97C06G111740Cucumber (Chinese Long) v3cucwmbB494