Lsi09G017010 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G017010
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPollen allergen Ole e 6-like protein
Locationchr09 : 25524932 .. 25526107 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCAAAAGCAAGACTTGAAATAACATCTCCAAAGGCAATAACACACCAAAGAAAAATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTGCAATTTGCCACTGCCAATGAAGAGGTGGAACAATATGAGGCTAAATTTGATGCTAAATACAAATCTTGCTATGAAACTTGTTTGAAGGAATGTCTTGAAAAGGGCAGTGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAATGAAAAAGAAGCTGCTGGTACTCCCCTCTTCTCTCTATCTTTCTTCTAACATCGACTGTCTTAAATCATTTTTTTCGCTATTTCCATAGACATTTCATACGTTTTTGAGTTCCACGTCGATTTAAGGAATGCATCAACCTTAAAAAAGGCAATTATATAACAAAAATAATGATGGGTGAATGCTAAATCGTTTATAAATAGAAAACATATGAAATTATTTACAAATGTAGAAATTTTTTTCTATATTTGTAAATAGAGGAATTTTTAAAAATAGATTAATAAGGGAAACTATTTACACAAAATAACAAAATTTTTAAGATAGTTATGATAGATGCTAATAGAAGTCTATCAGGATCTATCAGTGATAGAATTTCTATCACTGATAAATACTGATAGAAGTTTATCAATGTCTTTTTAATATTTTTTGTAAATATTTTGACATTTTTTCTATTTGTGATAATTTTCCTTTTCTATATTTGAAAATAACTATGTTTTATTTTTATAAAATTTTAAATATTTCCATATGGAAATTTTCATACAATTGATATTTTGAAATGTTATTTTTAATAAGTATTATTTATTATATTAATTTCAATTGTTGTGTTTGTTTCACAGATAAGCTGCACATCGACTTGCATTGAAAATTGGGGAACAAAAAGAAAGAAGAGCTCTTGCGAAGGATCAAGTAGTAATATTGTATCAAAATTAAGCTTGTAATGTGATTTTAATATCAAAATTTATAAAGTTCTTGGTCTTTGGTGTTATTGATGTGAATTGATTGGTAACGACGTCGAGAGCTCTAATTGTTATTATTGTATGGATGCAATCTCAAAATCAAAACTAGATAAGTATTTAAATTTAGAATAAAAATTTTCTAAATAAATAAAATTTTACTAAAATTATTTAAAGTGTATT

mRNA sequence

ACCAAAAGCAAGACTTGAAATAACATCTCCAAAGGCAATAACACACCAAAGAAAAATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTGCAATTTGCCACTGCCAATGAAGAGGTGGAACAATATGAGGCTAAATTTGATGCTAAATACAAATCTTGCTATGAAACTTGTTTGAAGGAATGTCTTGAAAAGGGCAGTGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAATGAAAAAGAAGCTGCTGATAAGCTGCACATCGACTTGCATTGAAAATTGGGGAACAAAAAGAAAGAAGAGCTCTTGCGAAGGATCAAGTAGTAATATTGTATCAAAATTAAGCTTGTAATGTGATTTTAATATCAAAATTTATAAAGTTCTTGGTCTTTGGTGTTATTGATGTGAATTGATTGGTAACGACGTCGAGAGCTCTAATTGTTATTATTGTATGGATGCAATCTCAAAATCAAAACTAGATAAGTATTTAAATTTAGAATAAAAATTTTCTAAATAAATAAAATTTTACTAAAATTATTTAAAGTGTATT

Coding sequence (CDS)

ATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTGCAATTTGCCACTGCCAATGAAGAGGTGGAACAATATGAGGCTAAATTTGATGCTAAATACAAATCTTGCTATGAAACTTGTTTGAAGGAATGTCTTGAAAAGGGCAGTGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAATGAAAAAGAAGCTGCTGATAAGCTGCACATCGACTTGCATTGA

Protein sequence

MAKKMIAVFLMFIVVVAALQFATANEEVEQYEAKFDAKYKSCYETCLKECLEKGSGESFCEVKCDEDCNEKEAADKLHIDLH
Homology
[Close]
BLAST of Lsi09G017010 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-08
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1 

Query: 36 DAKYKSCYETCLKECLEKGSGESFCEVKCDEDCNEKEAADKL 78
          +A++K CY+TC KEC +KG+G +FCE+KCD DC+ K+  +KL
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]
BLAST of Lsi09G017010 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.9e-28
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATAN-EEVEQYEAKFDAKYKSCYETCLKECLEKGSGESF 60
          MA KMIA+FLM IVVVAALQFA AN E+V +YEAKFDAKYKSC+ETC KECL  GSG+S+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSY 60

Query: 61 CEVKCDEDCNEKEAADKLHIDLH 83
          CEVKCDEDC+EKEAADKLHI+LH
Sbjct: 61 CEVKCDEDCDEKEAADKLHIELH 83

[Close]
BLAST of Lsi09G017010 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-26
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATANEE--VEQYEAKFDAKYKSCYETCLKECLEKGS-GE 60
          MAKKM+AVFLM IVVVA LQF  ANEE  V +YEAKFDAKYKSCYETC KECL   + GE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCNEKEAADKLHIDLH 83
          SFCEVKCDEDC+EKEAADKLHI+LH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]
BLAST of Lsi09G017010 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-25
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATANEEVE--QYEAKFDAKYKSCYETCLKECLEKGSGES 60
          MAKKM+AVFLM IVVV +LQFATAN+E E   YEAKFDAKYK+C+ TC KEC+E+GSG S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCNEKEAADKLHI 80
          +CEVKCDEDC  KEAADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Lsi09G017010 vs. TrEMBL
Match: A0A0A0K9T2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G101980 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-21
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATA-NEEVEQYEAKFDAKYKSCYETCLKECLEKGSGESF 60
          MAKK++AVF M IVV+A+LQF  A NEEV++YEAK++AKY SCYE CL+ CL + SG  +
Sbjct: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYEAKYEAKYVSCYENCLRICLARLSGRGY 60

Query: 61 CEVKCDEDCNEKEAADKLHIDL 82
          CEVKCDEDC EKE A+KLHI +
Sbjct: 61 CEVKCDEDCEEKEVAEKLHIQI 82

[Close]
BLAST of Lsi09G017010 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-20
Identity = 54/81 (66.67%), Postives = 69/81 (85.19%), Query Frame = 1 

Query: 3  KKMIAVFLMFIVVVAALQFATAN--EEVEQYEAKFDAKYKSCYETCLKECLEKG-SGESF 62
          KKM+ V L+ IVV+AAL+F+  N  E+ ++YE+KFDAKYK+CYE+C KECLE G +G+SF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCNEKEAADKLHID 81
          CEVKCDEDC EKE+ADKLHI+
Sbjct: 64 CEVKCDEDCGEKESADKLHIN 84

[Close]
BLAST of Lsi09G017010 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 68/84 (80.95%), Postives = 77/84 (91.67%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATAN--EEVEQYEAKFDAKYKSCYETCLKECLEKGSGES 60
          MAKKMIA+FLM IVVVAALQFA+AN  +EV +YEAKFDAKYKSC++TC KECLE GSG+S
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCNEKEAADKLHIDLH 83
          +CEVKCDEDCNEKE ADKLHI+LH
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIELH 84

[Close]
BLAST of Lsi09G017010 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATAN-EEVEQYEAKFDAKYKSCYETCLKECLEKGSGESF 60
          MA KMIA+FLM IVVVAALQFA AN E+V +YEAKFDAKYKSC+ETC KECL  GSG+S+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSY 60

Query: 61 CEVKCDEDCNEKEAADKLHIDLH 83
          CEVKCDEDC+EKEAADKLHI+LH
Sbjct: 61 CEVKCDEDCDEKEAADKLHIELH 83

[Close]
BLAST of Lsi09G017010 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATANEE--VEQYEAKFDAKYKSCYETCLKECLEKGS-GE 60
          MAKKM+AVFLM IVVVA LQF  ANEE  V +YEAKFDAKYKSCYETC KECL   + GE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCNEKEAADKLHIDLH 83
          SFCEVKCDEDC+EKEAADKLHI+LH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]
BLAST of Lsi09G017010 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATANEEVE--QYEAKFDAKYKSCYETCLKECLEKGSGES 60
          MAKKM+AVFLM IVVV +LQFATAN+E E   YEAKFDAKYK+C+ TC KEC+E+GSG S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCNEKEAADKLHI 80
          +CEVKCDEDC  KEAADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Lsi09G017010 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAALQFATAN--EEVEQYEAKFDAKYKSCYETCLKECLEKGSGES 60
          MAKKM+AVFLM IVVVA LQFATAN  +EV  YEAKFDAKYK+C+  C KEC+E+G G S
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKFDAKYKACFVICEKECVERGGGHS 60

Query: 61 FCEVKCDEDCNEKEAADKLHIDLH 83
          +CEVKCDEDC  KEAADKL I LH
Sbjct: 61 YCEVKCDEDCGAKEAADKLGIILH 84

The following BLAST results are available for this feature:
BLAST of Lsi09G017010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALL6_OLEEU2.3e-0854.76Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1[more]
BLAST of Lsi09G017010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPA7_CUCSA8.9e-2880.72Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA2.2e-2680.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
A0A0A0KDP7_CUCSA7.1e-2576.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
A0A0A0K9T2_CUCSA6.2e-2165.85Uncharacterized protein OS=Cucumis sativus GN=Csa_6G101980 PE=4 SV=1[more]
A0A0A0KCI6_CUCSA2.4e-2066.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
BLAST of Lsi09G017010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G017010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114221|ref|XP_008456958.1|1.2e-2880.95PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|449457470|ref|XP_004146471.1|1.3e-2780.72PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|700191316|gb|KGN46520.1|3.2e-2680.00hypothetical protein Csa_6G106720 [Cucumis sativus][more]
gi|449445523|ref|XP_004140522.1|1.0e-2476.54PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|659119712|ref|XP_008459802.1|1.1e-2373.81PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G017010.1Lsi09G017010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 37..78
score: 3.1
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 42..78
score: 4.6
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 36..77
score: 1.15
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..79
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G017010CmaCh17G005400Cucurbita maxima (Rimu)cmalsiB331
Lsi09G017010MELO3C022293Melon (DHL92) v3.5.1lsimeB017
Lsi09G017010CsGy6G008130Cucumber (Gy14) v2cgyblsiB366
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G017010Silver-seed gourdcarlsiB070
Lsi09G017010Silver-seed gourdcarlsiB883
Lsi09G017010Cucumber (Chinese Long) v3cuclsiB424
Lsi09G017010Watermelon (97103) v2lsiwmbB026
Lsi09G017010Wax gourdlsiwgoB011
Lsi09G017010Cucumber (Gy14) v1cgylsiB562
Lsi09G017010Cucurbita maxima (Rimu)cmalsiB814
Lsi09G017010Cucurbita moschata (Rifu)cmolsiB320
Lsi09G017010Cucurbita moschata (Rifu)cmolsiB800
Lsi09G017010Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G017010Cucurbita pepo (Zucchini)cpelsiB251
Lsi09G017010Wild cucumber (PI 183967)cpilsiB404
Lsi09G017010Cucumber (Chinese Long) v2culsiB402
Lsi09G017010Watermelon (Charleston Gray)lsiwcgB029
Lsi09G017010Watermelon (97103) v1lsiwmB036
Lsi09G017010Melon (DHL92) v3.6.1lsimedB019