CsGy6G008130 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G008130
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Major pollen allergen Ole e 6
Location	Chr6 : 6813461 .. 6814303 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACAGTTTTTGTTTGAACTTAGTTTAACCTTCTATATCGGCTTAAATTTCTTAGTGAAGAATCTATTTTTAGGATTACAAGAAGGCTATAAAGCAACATTCTCATCTTCTCAAACATTCATCCACTTGCCAAAGGGAGCACTTCGATAGACGCTAAATCCAAAGTGATTTTTAAAAGCGTCACCAAAGGCAAGTAAAAACCCACATAAAAAATAATAATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGGTACTACCCAAATTCATCTCTATTTTAATTTTAAAACCTCATTTTTTATTCTATTTAGAGTTTAATTTTAATTATTTTCTTGGATTAATTTTGAATTGTTGTATGATTGTTTTACAGAGAAGTTGCACATCCAAATCAAGCACTGATAATAATGGGGGAATTAAAGGAAAAATAAGTGCTCTCATGCATGGAGGATCAATGAGAGAGCTATATCATTGTATTGAAATTGAGTTCATGTGAGGGGAGTTTATGATGATAAACCCTCCTTTCTATACAATCATATGATTCTATTTATAATGAACTTTCTTTCTTTAATTTTTTGTGTCAACCCATCTAACCAATCTATTTTTTATACACAAATTCTCTAATGATATTAATATACACGAAAATCAAC

mRNA sequence

ATGGCTTACAGTTTTTGTTTGAACTTAGTTTAACCTTCTATATCGGCTTAAATTTCTTAGTGAAGAATCTATTTTTAGGATTACAAGAAGGCTATAAAGCAACATTCTCATCTTCTCAAACATTCATCCACTTGCCAAAGGGAGCACTTCGATAGACGCTAAATCCAAAGTGATTTTTAAAAGCGTCACCAAAGGCAAGTAAAAACCCACATAAAAAATAATAATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGAGAAGTTGCACATCCAAATCAAGCACTGATAATAATGGGGGAATTAAAGGAAAAATAAGTGCTCTCATGCATGGAGGATCAATGAGAGAGCTATATCATTGTATTGAAATTGAGTTCATGTGAGGGGAGTTTATGATGATAAACCCTCCTTTCTATACAATCATATGATTCTATTTATAATGAACTTTCTTTCTTTAATTTTTTGTGTCAACCCATCTAACCAATCTATTTTTTATACACAAATTCTCTAATGATATTAATATACACGAAAATCAAC

Coding sequence (CDS)

ATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGAGAAGTTGCACATCCAAATCAAGCACTGA

Protein sequence

MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYEAKYEAKYVSCYENCLRICLARLSGRGYCEVKCDEDCEEKEVAEKLHIQIKH

Homology

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BLAST of CsGy6G008130 vs. NCBI nr
Match: XP_004140523.2 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46485.1 hypothetical protein Csa_6G101980 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXKEVAEKLHIQIKH 85
          XXXXXXXXXXXKEVAEKLHIQIKH
Sbjct: 61 XXXXXXXXXXXKEVAEKLHIQIKH 84

[Close]

BLAST of CsGy6G008130 vs. TrEMBL
Match: tr|A0A0A0K9T2|A0A0A0K9T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G101980 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXKEVAEKLHIQIKH 85
          XXXXXXXXXXXKEVAEKLHIQIKH
Sbjct: 61 XXXXXXXXXXXKEVAEKLHIQIKH 84

The following BLAST results are available for this feature:

BLAST of CsGy6G008130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140523.2	1.7e-10	100.00	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46485.1 hypo...	[more]

BLAST of CsGy6G008130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G008130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G008130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9T2\|A0A0A0K9T2_CUCSA	1.1e-10	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G101980 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6
IPR036466	Pollen_allergen_ole-e-6_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G008130.1	CsGy6G008130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	G3DSA:1.10.287.720		coord: 36..83 e-value: 8.3E-14 score: 52.8
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	SSF111388	Pollen allergen ole e 6	coord: 37..78
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 43..79 e-value: 2.2E-9 score: 37.0
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G008130	Cla006728	Watermelon (97103) v1	cgybwmB509
CsGy6G008130	Csa6G101980	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G008130	MELO3C022293	Melon (DHL92) v3.5.1	cgybmeB379
CsGy6G008130	ClCG06G002400	Watermelon (Charleston Gray)	cgybwcgB438
CsGy6G008130	CSPI06G08070	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G008130	Lsi09G017010	Bottle gourd (USVL1VR-Ls)	cgyblsiB366
CsGy6G008130	MELO3C035236.2	Melon (DHL92) v3.6.1	cgybmedB381
CsGy6G008130	CsaV3_6G008470	Cucumber (Chinese Long) v3	cgybcucB298

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G008130	Cucurbita maxima (Rimu)	cgybcmaB866
CsGy6G008130	Cucurbita moschata (Rifu)	cgybcmoB848
CsGy6G008130	Cucurbita pepo (Zucchini)	cgybcpeB732
CsGy6G008130	Cucurbita pepo (Zucchini)	cgybcpeB778
CsGy6G008130	Watermelon (97103) v1	cgybwmB513
CsGy6G008130	Silver-seed gourd	carcgybB0089
CsGy6G008130	Watermelon (97103) v2	cgybwmbB446