CsaV3_6G008470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G008470
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 6790945 .. 6791796 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAGTTTAACCTTCTATATCGGCTTAAATTTCTTAGTGAAGAATCTATTTTTAGGATTACAAGAAGGCTATAAAGCAACATTCTCATCTTCTCAAACATTCATCCACTTGCCAAAGGGAGCACTTCGATAGACGCTAAATCCAAAGTGATTTTTAAAAGCGTCACCAAAGGCAAGTAAAAACCCACATAAAAAATAATAATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGGTACTACCCAAATTCATCTCTATTTTAATTTTAAAACCTCATTTTTTATTCTATTTAGAGTTTAATTTTAATTATTTTCTTGGATTAATTTTGAATTGTTGTATGATTGTTTTACAGAGAAGTTGCACATCCAAATCAAGCACTGATAATAATGGGGGAATTAAAGGAAAAATAAGTGCTCTCATGCATGGAGGATCAATGAGAGAGCTATATCATTGTATTGAAATTGAGTTCATGTGAGGGGAGTTTATGATGATAAACCCTCCTTTCTATACAATCATATGATTCTATTTATAATGAACTTTCTTTCTTTAATTTTTTGTGTCAACCCATCTAACCAATCTATTTTTTATACACAAATTCTCTAATGATATTAATATACACGAAAATCAACACCACATGAGAGTATATACTATCAACTTTCGA

mRNA sequence

ATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGAGAAGTTGCACATCCAAATCAAGCACTGA

Coding sequence (CDS)

ATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGAGAAGTTGCACATCCAAATCAAGCACTGA

Protein sequence

MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYEAKYEAKYVSCYENCLRICLARLSGRGYCEVKCDEDCEEKEVAEKLHIQIKH
Homology
[Close]
BLAST of CsaV3_6G008470 vs. NCBI nr
Match: XP_004140523.2 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46485.1 hypothetical protein Csa_6G101980 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 9.8e-11
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXKEVAEKLHIQIKH 85
          XXXXXXXXXXXKEVAEKLHIQIKH
Sbjct: 61 XXXXXXXXXXXKEVAEKLHIQIKH 84

[Close]
BLAST of CsaV3_6G008470 vs. TrEMBL
Match: tr|A0A0A0K9T2|A0A0A0K9T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G101980 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXKEVAEKLHIQIKH 85
          XXXXXXXXXXXKEVAEKLHIQIKH
Sbjct: 61 XXXXXXXXXXXKEVAEKLHIQIKH 84

The following BLAST results are available for this feature:
BLAST of CsaV3_6G008470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140523.29.8e-11100.00PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46485.1 hypo... [more]
BLAST of CsaV3_6G008470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G008470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G008470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K9T2|A0A0A0K9T2_CUCSA6.5e-11100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G101980 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
IPR036466Pollen_allergen_ole-e-6_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G008470.1CsaV3_6G008470.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036466Pollen allergen ole e 6 superfamilyGENE3DG3DSA:1.10.287.720coord: 36..83
e-value: 8.3E-14
score: 52.8
IPR036466Pollen allergen ole e 6 superfamilySUPERFAMILYSSF111388Pollen allergen ole e 6coord: 37..78
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 43..79
e-value: 2.2E-9
score: 37.0
IPR015333Pollen allergen ole e 6PANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G008470CSPI06G08070Wild cucumber (PI 183967)cpicucB364
CsaV3_6G008470CsGy6G008130Cucumber (Gy14) v2cgybcucB298
CsaV3_6G008470Cla006728Watermelon (97103) v1cucwmB570
CsaV3_6G008470MELO3C022292Melon (DHL92) v3.5.1cucmeB444
CsaV3_6G008470ClCG06G002400Watermelon (Charleston Gray)cucwcgB497
CsaV3_6G008470Lsi09G017000Bottle gourd (USVL1VR-Ls)cuclsiB424
CsaV3_6G008470MELO3C034947.2Melon (DHL92) v3.6.1cucmedB435
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G008470Silver-seed gourdcarcucB0096
CsaV3_6G008470Silver-seed gourdcarcucB0100
CsaV3_6G008470Silver-seed gourdcarcucB1009
CsaV3_6G008470Cucumber (Gy14) v1cgycucB532
CsaV3_6G008470Cucurbita maxima (Rimu)cmacucB1067
CsaV3_6G008470Cucurbita maxima (Rimu)cmacucB1083
CsaV3_6G008470Cucurbita moschata (Rifu)cmocucB1049
CsaV3_6G008470Cucurbita moschata (Rifu)cmocucB1065
CsaV3_6G008470Cucurbita pepo (Zucchini)cpecucB0397
CsaV3_6G008470Watermelon (97103) v2cucwmbB487