CsGy6G008130.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy6G008130.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMajor pollen allergen Ole e 6
LocationChr6 : 6813461 .. 6814303 (-)
Sequence length726
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTACAGTTTTTGTTTGAACTTAGTTTAACCTTCTATATCGGCTTAAATTTCTTAGTGAAGAATCTATTTTTAGGATTACAAGAAGGCTATAAAGCAACATTCTCATCTTCTCAAACATTCATCCACTTGCCAAAGGGAGCACTTCGATAGACGCTAAATCCAAAGTGATTTTTAAAAGCGTCACCAAAGGCAAGTAAAAACCCACATAAAAAATAATAATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGGTACTACCCAAATTCATCTCTATTTTAATTTTAAAACCTCATTTTTTATTCTATTTAGAGTTTAATTTTAATTATTTTCTTGGATTAATTTTGAATTGTTGTATGATTGTTTTACAGAGAAGTTGCACATCCAAATCAAGCACTGATAATAATGGGGGAATTAAAGGAAAAATAAGTGCTCTCATGCATGGAGGATCAATGAGAGAGCTATATCATTGTATTGAAATTGAGTTCATGTGAGGGGAGTTTATGATGATAAACCCTCCTTTCTATACAATCATATGATTCTATTTATAATGAACTTTCTTTCTTTAATTTTTTGTGTCAACCCATCTAACCAATCTATTTTTTATACACAAATTCTCTAATGATATTAATATACACGAAAATCAAC

mRNA sequence

ATGGCTTACAGTTTTTGTTTGAACTTAGTTTAACCTTCTATATCGGCTTAAATTTCTTAGTGAAGAATCTATTTTTAGGATTACAAGAAGGCTATAAAGCAACATTCTCATCTTCTCAAACATTCATCCACTTGCCAAAGGGAGCACTTCGATAGACGCTAAATCCAAAGTGATTTTTAAAAGCGTCACCAAAGGCAAGTAAAAACCCACATAAAAAATAATAATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGAGAAGTTGCACATCCAAATCAAGCACTGATAATAATGGGGGAATTAAAGGAAAAATAAGTGCTCTCATGCATGGAGGATCAATGAGAGAGCTATATCATTGTATTGAAATTGAGTTCATGTGAGGGGAGTTTATGATGATAAACCCTCCTTTCTATACAATCATATGATTCTATTTATAATGAACTTTCTTTCTTTAATTTTTTGTGTCAACCCATCTAACCAATCTATTTTTTATACACAAATTCTCTAATGATATTAATATACACGAAAATCAAC

Coding sequence (CDS)

ATGGCCAAGAAGATTGTTGCAGTGTTTTTTATGTGCATTGTAGTGATGGCTTCTTTGCAATTTGGCAATGCCACCAACGAAGAGGTTAAGAAATATGAGGCTAAATATGAGGCCAAATATGTGTCTTGCTATGAAAATTGTTTGAGGATATGCCTTGCAAGGCTCAGCGGCCGAGGCTACTGCGAAGTTAAATGTGACGAAGATTGCGAAGAGAAAGAAGTTGCTGAGAAGTTGCACATCCAAATCAAGCACTGA

Protein sequence

MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYEAKYEAKYVSCYENCLRICLARLSGRGYCEVKCDEDCEEKEVAEKLHIQIKH
Homology
[Close]
BLAST of CsGy6G008130.1 vs. NCBI nr
Match: XP_004140523.2 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46485.1 hypothetical protein Csa_6G101980 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXKEVAEKLHIQIKH 85
          XXXXXXXXXXXKEVAEKLHIQIKH
Sbjct: 61 XXXXXXXXXXXKEVAEKLHIQIKH 84

[Close]
BLAST of CsGy6G008130.1 vs. TrEMBL
Match: tr|A0A0A0K9T2|A0A0A0K9T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G101980 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKIVAVFFMCIVVMASLQFGNATNEEVKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXKEVAEKLHIQIKH 85
          XXXXXXXXXXXKEVAEKLHIQIKH
Sbjct: 61 XXXXXXXXXXXKEVAEKLHIQIKH 84

The following BLAST results are available for this feature:
BLAST of CsGy6G008130.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140523.21.7e-10100.00PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN46485.1 hypo... [more]
BLAST of CsGy6G008130.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G008130.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G008130.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K9T2|A0A0A0K9T2_CUCSA1.1e-10100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G101980 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
IPR036466Pollen_allergen_ole-e-6_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G008130CsGy6G008130gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G008130.1CsGy6G008130.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G008130.1.five_prime_UTR.1CsGy6G008130.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G008130.1.exon.2CsGy6G008130.1.exon.2exon
CsGy6G008130.1.exon.1CsGy6G008130.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G008130.1.CDS.2CsGy6G008130.1.CDS.2CDS
CsGy6G008130.1.CDS.1CsGy6G008130.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G008130.1.three_prime_UTR.1CsGy6G008130.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036466Pollen allergen ole e 6 superfamilyGENE3DG3DSA:1.10.287.720coord: 36..83
e-value: 8.3E-14
score: 52.8
IPR036466Pollen allergen ole e 6 superfamilySUPERFAMILYSSF111388Pollen allergen ole e 6coord: 37..78
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 43..79
e-value: 2.2E-9
score: 37.0
IPR015333Pollen allergen ole e 6PANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..79