Csa6G102480 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G102480
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR015333 (Pollen allergen ole e 6)
Location	Chr6 : 6742747 .. 6743452 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAGCACTTGTAAAAAGGCACAATCCAAAGCAAGAAAAGAAAATTATGGCGAAGAAGATGATGGGAGTGTTGTTGATATGCATTGTAATAATGGCTGTTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAATACGAGTCCAAATTTGATGCTAGGTACAAATCATGCTATGAAAGTTGTGAGAAAGAATGTCTTACAAATGGTAAAAATGGTCAAAGTTATTGCGAAGTTAAATGCGATGAAGATTGCGATGAAAAAGAAGTTGCTGGTATTCTTTCTCGATCTCTTTTCCTTCTCTGTCTTTTCTTACTAAGAAATTACTTTTTCAATATTTTCACACGAACTCAAGGTAGAGAATCGTTTGAACATGTTTATAAACTCAAATTTTGTTTAGTATAATTAAATTGAAATTATTGTATTTGTTTTGCAGATAAGTTGCACGTTGAAGTGAATTGAGGAATGAAAAACAAAGGAAAGAGGAGGCTCTTGAGAAGGATCAAATTAGTTCATGAGAGGAAGTTAATAATATGTAATTTTAACATTCAATTTTTTGGTCATTAATATAGGTGAATCCACCATTTTCATGTTTTTCTTTTTCTTTCAAGGAATAATTTTTGTGCTTCTTAATAATTTTTATTTAGAAACAAAAAAATAGTTCGATAAATGCCACAAACATTATTATATATGATCGTTGA

mRNA sequence

ATGGCGAAGAAGATGATGGGAGTGTTGTTGATATGCATTGTAATAATGGCTGTTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAATACGAGTCCAAATTTGATGCTAGGTACAAATCATGCTATGAAAGTTGTGAGAAAGAATGTCTTACAAATGGTAAAAATGGTCAAAGTTATTGCGAAGTTAAATGCGATGAAGATTGCGATGAAAAAGAAGTTGCTGATAAGTTGCACGTTGAAGTGAATTGA

Coding sequence (CDS)

ATGGCGAAGAAGATGATGGGAGTGTTGTTGATATGCATTGTAATAATGGCTGTTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAATACGAGTCCAAATTTGATGCTAGGTACAAATCATGCTATGAAAGTTGTGAGAAAGAATGTCTTACAAATGGTAAAAATGGTCAAAGTTATTGCGAAGTTAAATGCGATGAAGATTGCGATGAAAAAGAAGTTGCTGATAAGTTGCACGTTGAAGTGAATTGA

Protein sequence

MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQSYCEVKCDEDCDEKEVADKLHVEVN*

Homology

[Close]

BLAST of Csa6G102480 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-07
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 38 DARYKSCYESCEKECLTNGKNGQSYCEVKCDEDCDEKEVADKL 81
          +A++K CY++C KEC   G NG ++CE+KCD DC  K+V +KL
Sbjct: 2  EAQFKECYDTCHKECSDKG-NGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of Csa6G102480 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60
          MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SYCEVKCDEDCDEKEVADKLHVEVN 86
          SYCEVKCDEDCDEKEVADKLHVEVN
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEVN 85

[Close]

BLAST of Csa6G102480 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.6e-35
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQSY 62
          KKMMGVLLICIV+MA LEFSIVNGEEKEDKYESKFDA+YK+CYESCEKECL NG NGQS+
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKEVADKLHV 83
          CEVKCDEDC EKE ADKLH+
Sbjct: 64 CEVKCDEDCGEKESADKLHI 83

[Close]

BLAST of Csa6G102480 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.2e-28
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60
          MAKKMM V L+CIV++A L+F + N E+   KYE+KFDA+YKSCYE+CEKECL N  NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SYCEVKCDEDCDEKEVADKLHVEVN 86
          S+CEVKCDEDC EKE ADKLH+E++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]

BLAST of Csa6G102480 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60
          MA KM+ + L+CIV++A L+F+  N E+   KYE+KFDA+YKSC+E+CEKECL  G +GQ
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVA-KYEAKFDAKYKSCFETCEKECLRYG-SGQ 60

Query: 61 SYCEVKCDEDCDEKEVADKLHVEVN 86
          SYCEVKCDEDCDEKE ADKLH+E++
Sbjct: 61 SYCEVKCDEDCDEKEAADKLHIELH 83

[Close]

BLAST of Csa6G102480 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60
          MAKKMM V L+CIV++  L+F+  N E +   YE+KFDA+YK+C+ +CEKEC+  G +G 
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERG-SGH 60

Query: 61 SYCEVKCDEDCDEKEVADKLHV 83
          SYCEVKCDEDC  KE ADKLH+
Sbjct: 61 SYCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of Csa6G102480 vs. NCBI nr
Match: gi|700191282|gb|KGN46486.1| (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60
          MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SYCEVKCDEDCDEKEVADKLHVEVN 86
          SYCEVKCDEDCDEKEVADKLHVEVN
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEVN 85

[Close]

BLAST of Csa6G102480 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 6.6e-35
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQSY 62
          KKMMGVLLICIV+MA LEFSIVNGEEKEDKYESKFDA+YK+CYESCEKECL NG NGQS+
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKEVADKLHV 83
          CEVKCDEDC EKE ADKLH+
Sbjct: 64 CEVKCDEDCGEKESADKLHI 83

[Close]

BLAST of Csa6G102480 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-28
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60
          MAKKMM V L+CIV++A L+F + N E+   KYE+KFDA+YKSCYE+CEKECL N  NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SYCEVKCDEDCDEKEVADKLHVEVN 86
          S+CEVKCDEDC EKE ADKLH+E++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]

BLAST of Csa6G102480 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 8.7e-27
Identity = 56/85 (65.88%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60
          MAKKM+ + L+CIV++A L+F+  N E++  KYE+KFDA+YKSC+++CEKECL NG +GQ
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENG-SGQ 60

Query: 61 SYCEVKCDEDCDEKEVADKLHVEVN 86
          SYCEVKCDEDC+EKEVADKLH+E++
Sbjct: 61 SYCEVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of Csa6G102480 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-24
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60
          MA KM+ + L+CIV++A L+F+  N E+   KYE+KFDA+YKSC+E+CEKECL  G +GQ
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVA-KYEAKFDAKYKSCFETCEKECLRYG-SGQ 60

Query: 61 SYCEVKCDEDCDEKEVADKLHVEVN 86
          SYCEVKCDEDCDEKE ADKLH+E++
Sbjct: 61 SYCEVKCDEDCDEKEAADKLHIELH 83

The following BLAST results are available for this feature:

BLAST of Csa6G102480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALL6_OLEEU	2.0e-07	51.16	Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1	[more]

BLAST of Csa6G102480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFH6_CUCSA	1.8e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1	[more]
A0A0A0KCI6_CUCSA	4.6e-35	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1	[more]
A0A0A0K9Z9_CUCSA	4.2e-28	67.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1	[more]
A0A0A0KPA7_CUCSA	1.7e-24	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1	[more]
A0A0A0KDP7_CUCSA	1.0e-21	59.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1	[more]

BLAST of Csa6G102480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191282\|gb\|KGN46486.1\|	2.5e-42	100.00	hypothetical protein Csa_6G102480 [Cucumis sativus]	[more]
gi\|700191315\|gb\|KGN46519.1\|	6.6e-35	87.50	hypothetical protein Csa_6G106710 [Cucumis sativus]	[more]
gi\|700191316\|gb\|KGN46520.1\|	6.0e-28	67.06	hypothetical protein Csa_6G106720 [Cucumis sativus]	[more]
gi\|659114221\|ref\|XP_008456958.1\|	8.7e-27	65.88	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
gi\|449457470\|ref\|XP_004146471.1\|	2.4e-24	64.71	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092567	cucumber EST collection version 3.0	transcribed_cluster
CU137879	cucumber EST collection version 3.0	transcribed_cluster
CU165513	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G102480.1	Csa6G102480.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU137879	CU137879	transcribed_cluster
CU092567	CU092567	transcribed_cluster
CU165513	CU165513	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	GENE3D	G3DSA:1.10.287.720		coord: 39..81 score: 1.2
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 44..81 score: 5.5
IPR015333	Pollen allergen ole e 6	unknown	SSF111388	Pollen allergen ole e 6	coord: 38..80 score: 2.75
None	No IPR available	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..81 score: 2.6
None	No IPR available	PANTHER	PTHR35632:SF1	SUBFAMILY NOT NAMED	coord: 1..81 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G102480	Cla006728	Watermelon (97103) v1	cuwmB544
Csa6G102480	MELO3C022292	Melon (DHL92) v3.5.1	cumeB442
Csa6G102480	ClCG06G002400	Watermelon (Charleston Gray)	cuwcgB476
Csa6G102480	Lsi09G017000	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G102480	MELO3C022291.2	Melon (DHL92) v3.6.1	cumedB422
Csa6G102480	Cla97C06G111730	Watermelon (97103) v2	cuwmbB468
Csa6G102480	CSPI06G08080	Wild cucumber (PI 183967)	cpicuB314
Csa6G102480	CsGy6G008150	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G102480	Cucumber (Gy14) v1	cgycuB490
Csa6G102480	Cucurbita maxima (Rimu)	cmacuB897
Csa6G102480	Cucurbita maxima (Rimu)	cmacuB911
Csa6G102480	Cucurbita moschata (Rifu)	cmocuB882
Csa6G102480	Cucurbita moschata (Rifu)	cmocuB897
Csa6G102480	Cucurbita pepo (Zucchini)	cpecuB318
Csa6G102480	Cucurbita pepo (Zucchini)	cpecuB331
Csa6G102480	Silver-seed gourd	carcuB0089
Csa6G102480	Silver-seed gourd	carcuB0093