Lsi09G010790 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G010790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DUF3511 domain protein
Location	chr09 : 16920169 .. 16920723 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGGAAGGGGTCCACCGTCGTCCAAACAAGGGCGGTCGGAGCCTGGAAATCATAGACGTGAGAAAGCTAAGCGAAAACAAGATTCATCTAAACCAATCACGTCGTCGAGCCACCATAGATCAATCAACAGTGAAACCACGTGCGATCAAGACATCAGAATCCTCGAAACCTTCAGCTGGGAAGTCATGGTGGAAGAACCTAGAAATGAAGAGACGACGACGTGTCGCAAAGTACAAGTTATATACAGTGGAAGGGAAGGTAAAGGATTCCATGAAGAAAGGAATCGATTGGTTCAAAAGCAGATGTAGAAGAATCATATATGGCTTTTGAAACATTTTTAATCATGTTTTCTGTTTTGTAAGGAAACAAAGCTTCAACATTCATACCCCTTTTCTTGTTCTCTTTTTCTATAGAATGGTTTCAAAACATAGAATGGCTCATCATAAAGTTATCAATCCTTTTTGTTTTATGTTGTTTTCTTGCAGGGTTGTGTTTGTTAATTTGTTGTTCTCTGTTGGATATGATAAAACTAGAGGCGCATCGAGATAA

mRNA sequence

ATGACGATGGAAGGGGTCCACCGTCGTCCAAACAAGGGCGGTCGGAGCCTGGAAATCATAGACGTGAGAAAGCTAAGCGAAAACAAGATTCATCTAAACCAATCACGTCGTCGAGCCACCATAGATCAATCAACAGTGAAACCACGTGCGATCAAGACATCAGAATCCTCGAAACCTTCAGCTGGGAAGTCATGGTGGAAGAACCTAGAAATGAAGAGACGACGACGTGTCGCAAAGTACAAGTTATATACAGTGGAAGGGAAGGTAAAGGATTCCATGAAGAAAGGAATCGATTGGGTTGTGTTTGTTAATTTGTTGTTCTCTGTTGGATATGATAAAACTAGAGGCGCATCGAGATAA

Coding sequence (CDS)

ATGACGATGGAAGGGGTCCACCGTCGTCCAAACAAGGGCGGTCGGAGCCTGGAAATCATAGACGTGAGAAAGCTAAGCGAAAACAAGATTCATCTAAACCAATCACGTCGTCGAGCCACCATAGATCAATCAACAGTGAAACCACGTGCGATCAAGACATCAGAATCCTCGAAACCTTCAGCTGGGAAGTCATGGTGGAAGAACCTAGAAATGAAGAGACGACGACGTGTCGCAAAGTACAAGTTATATACAGTGGAAGGGAAGGTAAAGGATTCCATGAAGAAAGGAATCGATTGGGTTGTGTTTGTTAATTTGTTGTTCTCTGTTGGATATGATAAAACTAGAGGCGCATCGAGATAA

Protein sequence

MTMEGVHRRPNKGGRSLEIIDVRKLSENKIHLNQSRRRATIDQSTVKPRAIKTSESSKPSAGKSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDWVVFVNLLFSVGYDKTRGASR

Homology

[Close]

BLAST of Lsi09G010790 vs. TrEMBL
Match: A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-33
Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRSLEIIDVRKLSENKIHLNQSRRRATIDQSTVKPRAIKT-SESSKPSA 62
           MEGVHRRPNKG R+L IIDVRKLSENKIHLNQS R++T++ S+VKPR +KT SESSK S 
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 63  GKSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDW 100
           GKSW K LE+KRRRRVAKYKLYTVEGKVKDS++KGI+W
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINW 136

[Close]

BLAST of Lsi09G010790 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.6e-28
Identity = 66/98 (67.35%), Postives = 76/98 (77.55%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRSLEIIDVRKLSENKIHLNQSRRRATIDQSTVKPRAIKTSESSKPSAG 62
           MEG+H  PNKGGRSLE+IDVRKLS NK++LNQS+RR  +D S VK    KTSE SK    
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 63  KSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDWV 101
           K WWK  EM+RR+RVAKYKLY VEGKVK S+KKGI W+
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWI 98

[Close]

BLAST of Lsi09G010790 vs. TrEMBL
Match: A0A061F3Z2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 3   MEGVHRRPNK-------GGRSLEIIDVRKLSE-NKIHLNQSRRRATIDQSTV--KPRAIK 62
           ME   RRP+        GGR+ EI D   L   NK++  +S +   +D S    K  A K
Sbjct: 1   MEEYFRRPSYRPAAAGVGGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKK 60

Query: 63  TSESSKPSAGKSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDWV 101
             +    +  KSWW   +MKR+RR+AKYK++ +EGK+K+S+KKG  W+
Sbjct: 61  KRKEESRTTSKSWWNEPKMKRKRRLAKYKMFALEGKLKESLKKGSRWI 108

[Close]

BLAST of Lsi09G010790 vs. TrEMBL
Match: M5W2H8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024789mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 13  GGRSLEIIDVRKLSENKI------HLNQS---------RRRATIDQSTVKPRAIKTSESS 72
           G R+L++++VR+LSEN+       HL+ S         +R   +     KP+      SS
Sbjct: 13  GCRNLDMVNVRRLSENRTMYMGRSHLDPSWAPYPMKTRQRDIQLRIGGKKPK----ERSS 72

Query: 73  KPSAGKSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDW 100
           KPS  K WW + E KRR RVA+YKLY  EGKVK S+KKG  W
Sbjct: 73  KPS--KLWWNDPEFKRRGRVARYKLYGAEGKVKRSLKKGYRW 108

[Close]

BLAST of Lsi09G010790 vs. TrEMBL
Match: A0A067H7X9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045042mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 1


Query: 5   GVHRRPNKGGRSLEIIDVRKLSENKIHLNQSRRRATIDQSTVKPRAIKTSESSKPSAGKS 64
           G  +RP  G R LEI+ V   S     +  ++  AT D   + PR  + S  +     K 
Sbjct: 7   GSGQRPYGGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRMPRQSHDASL---KP 66

Query: 65  W-WKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDWV 101
           W + + EMKRR+R+AKYK+YTVEGKVK S++KG+ W+
Sbjct: 67  WGFTDPEMKRRKRIAKYKVYTVEGKVKASLRKGLRWI 100

[Close]

BLAST of Lsi09G010790 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 53.9 bits (128), Expect = 7.8e-08
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 37  RRATIDQSTVKPRAIKTSESSKPSAGKSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKG 96
           R+ +     V+PR      SS  +  K WW + E+KR+RRVAKYKLY+ EGK+K +++K 
Sbjct: 54  RKMSYKDMPVRPRR----SSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKS 113

Query: 97  IDWV 101
             W+
Sbjct: 114 YKWI 113

[Close]

BLAST of Lsi09G010790 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 47.8 bits (112), Expect = 5.6e-06
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 70  EMKRRRRVAKYKLYTVEGKVKDSMKKGIDWV 101
           EMKR++R+A+YK YTVEGKVK ++K G  W+
Sbjct: 69  EMKRKKRIARYKAYTVEGKVKSTLKNGFRWI 99

[Close]

BLAST of Lsi09G010790 vs. NCBI nr
Match: gi|659082109|ref|XP_008441676.1| (PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 79/100 (79.00%), Postives = 90/100 (90.00%), Query Frame = 1


Query: 1   MTMEGVHRRPNKGGRSLEIIDVRKLSENKIHLNQSRRRATIDQSTVKPRAIK-TSESSKP 60
           MTME VHRRPNKG R+L+IIDVRKLSENK+HLNQSRR +TID S++KPRAIK TSESSK 
Sbjct: 1   MTMERVHRRPNKGDRNLKIIDVRKLSENKMHLNQSRRHSTIDPSSMKPRAIKTTSESSKA 60

Query: 61  SAGKSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDW 100
           S  K WWKN EMKRRRRVAKYKLYTVEG+VK+S++KGI+W
Sbjct: 61  STVKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINW 100

[Close]

BLAST of Lsi09G010790 vs. NCBI nr
Match: gi|700206328|gb|KGN61447.1| (hypothetical protein Csa_2G123580 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.0e-33
Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRSLEIIDVRKLSENKIHLNQSRRRATIDQSTVKPRAIKT-SESSKPSA 62
           MEGVHRRPNKG R+L IIDVRKLSENKIHLNQS R++T++ S+VKPR +KT SESSK S 
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 63  GKSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDW 100
           GKSW K LE+KRRRRVAKYKLYTVEGKVKDS++KGI+W
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINW 136

[Close]

BLAST of Lsi09G010790 vs. NCBI nr
Match: gi|700201003|gb|KGN56136.1| (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 66/98 (67.35%), Postives = 76/98 (77.55%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRSLEIIDVRKLSENKIHLNQSRRRATIDQSTVKPRAIKTSESSKPSAG 62
           MEG+H  PNKGGRSLE+IDVRKLS NK++LNQS+RR  +D S VK    KTSE SK    
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 63  KSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDWV 101
           K WWK  EM+RR+RVAKYKLY VEGKVK S+KKGI W+
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWI 98

[Close]

BLAST of Lsi09G010790 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 7.8e-26
Identity = 65/98 (66.33%), Postives = 75/98 (76.53%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRSLEIIDVRKLSENKIHLNQSRRRATIDQSTVKPRAIKTSESSKPSAG 62
           MEG+H   NKGGRSLE++DVRKLSENK++LNQS+RR  +D S VK    KT E SK    
Sbjct: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSKMK-- 60

Query: 63  KSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDWV 101
           KSWWK  EMKRR+RVAKYKLY VEGKVK S+KKG  W+
Sbjct: 61  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWI 96

[Close]

BLAST of Lsi09G010790 vs. NCBI nr
Match: gi|590644563|ref|XP_007031116.1| (Uncharacterized protein TCM_026743 [Theobroma cacao])

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-09
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 3   MEGVHRRPNK-------GGRSLEIIDVRKLSE-NKIHLNQSRRRATIDQSTV--KPRAIK 62
           ME   RRP+        GGR+ EI D   L   NK++  +S +   +D S    K  A K
Sbjct: 1   MEEYFRRPSYRPAAAGVGGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKK 60

Query: 63  TSESSKPSAGKSWWKNLEMKRRRRVAKYKLYTVEGKVKDSMKKGIDWV 101
             +    +  KSWW   +MKR+RR+AKYK++ +EGK+K+S+KKG  W+
Sbjct: 61  KRKEESRTTSKSWWNEPKMKRKRRLAKYKMFALEGKLKESLKKGSRWI 108

The following BLAST results are available for this feature:

BLAST of Lsi09G010790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G010790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL30_CUCSA	3.5e-33	78.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1	[more]
A0A0A0L7N5_CUCSA	7.6e-28	67.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1	[more]
A0A061F3Z2_THECC	4.6e-09	38.89	Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1	[more]
M5W2H8_PRUPE	2.5e-07	43.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024789mg PE=4 SV=1	[more]
A0A067H7X9_CITSI	2.5e-07	41.24	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045042mg PE=4 SV=1	[more]

BLAST of Lsi09G010790 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	7.8e-08	42.19	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	5.6e-06	61.29	Protein of unknown function (DUF3511)	[more]

BLAST of Lsi09G010790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082109\|ref\|XP_008441676.1\|	1.2e-34	79.00	PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo]	[more]
gi\|700206328\|gb\|KGN61447.1\|	5.0e-33	78.57	hypothetical protein Csa_2G123580 [Cucumis sativus]	[more]
gi\|700201003\|gb\|KGN56136.1\|	1.1e-27	67.35	hypothetical protein Csa_3G077700 [Cucumis sativus]	[more]
gi\|659126920\|ref\|XP_008463430.1\|	7.8e-26	66.33	PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo]	[more]
gi\|590644563\|ref\|XP_007031116.1\|	6.6e-09	38.89	Uncharacterized protein TCM_026743 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G010790.1	Lsi09G010790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 67..100 score: 1.7
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 17..100 score: 4.9
None	No IPR available	PANTHER	PTHR33193:SF3	SUBFAMILY NOT NAMED	coord: 17..100 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G010790	Csa2G123580	Cucumber (Chinese Long) v2	culsiB091
Lsi09G010790	Cucsa.266180	Cucumber (Gy14) v1	cgylsiB430
Lsi09G010790	CmaCh15G014410	Cucurbita maxima (Rimu)	cmalsiB265
Lsi09G010790	CmoCh15G015180	Cucurbita moschata (Rifu)	cmolsiB252
Lsi09G010790	MELO3C008511	Melon (DHL92) v3.5.1	lsimeB028
Lsi09G010790	ClCG06G009930	Watermelon (Charleston Gray)	lsiwcgB031
Lsi09G010790	MELO3C008511.2	Melon (DHL92) v3.6.1	lsimedB030
Lsi09G010790	Bhi12G001192	Wax gourd	lsiwgoB035
Lsi09G010790	CsGy2G009170	Cucumber (Gy14) v2	cgyblsiB084
Lsi09G010790	CsaV3_2G011280	Cucumber (Chinese Long) v3	cuclsiB102

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G010790	Watermelon (97103) v2	lsiwmbB026
Lsi09G010790	Wax gourd	lsiwgoB007
Lsi09G010790	Cucurbita maxima (Rimu)	cmalsiB264
Lsi09G010790	Cucurbita moschata (Rifu)	cmolsiB251
Lsi09G010790	Cucurbita pepo (Zucchini)	cpelsiB132
Lsi09G010790	Wild cucumber (PI 183967)	cpilsiB090
Lsi09G010790	Melon (DHL92) v3.5.1	lsimeB023
Lsi09G010790	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G010790	Watermelon (97103) v1	lsiwmB040
Lsi09G010790	Melon (DHL92) v3.6.1	lsimedB025