ClCG06G009930 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G009930
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Chromosome chr9 scaffold_7, whole genome shotgun sequence
Location	CG_Chr06 : 19997572 .. 19997907 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGGAAGGGGTCCACCGTCGTCCAAACAAGGGCGGTCGGAACCTGGAAATCATAGATGTGAGAAAACTAAGTGAAAACAAGATGCATCTAAACCAATCACGTCGTCGAGCTGCCATGGATCCATCGTCAGTGAAACCACGTGTAATCAAAACATTAGAATCCTCGAAAACTTCAACTGAGAAGTTATGGTGGAAGGACCCAGAAATGAAGAGGCGACAACGCGTCGCAAAGTACAAGTTGTATACAGTGGAAGGAAAGGTAAAAGATTCAATAAAGAAAGGGATGAATTGGTTCAAAAGCAGGTGTAAGAGAATCTTGTATGGCTTTTGA

mRNA sequence

ATGACGATGGAAGGGGTCCACCGTCGTCCAAACAAGGGCGGTCGGAACCTGGAAATCATAGATGTGAGAAAACTAAGTGAAAACAAGATGCATCTAAACCAATCACGTCGTCGAGCTGCCATGGATCCATCGTCAGTGAAACCACGTGTAATCAAAACATTAGAATCCTCGAAAACTTCAACTGAGAAGTTATGGTGGAAGGACCCAGAAATGAAGAGGCGACAACGCGTCGCAAAGTACAAGTTGTATACAGTGGAAGGAAAGGTAAAAGATTCAATAAAGAAAGGGATGAATTGGTTCAAAAGCAGGTGTAAGAGAATCTTGTATGGCTTTTGA

Coding sequence (CDS)

ATGACGATGGAAGGGGTCCACCGTCGTCCAAACAAGGGCGGTCGGAACCTGGAAATCATAGATGTGAGAAAACTAAGTGAAAACAAGATGCATCTAAACCAATCACGTCGTCGAGCTGCCATGGATCCATCGTCAGTGAAACCACGTGTAATCAAAACATTAGAATCCTCGAAAACTTCAACTGAGAAGTTATGGTGGAAGGACCCAGAAATGAAGAGGCGACAACGCGTCGCAAAGTACAAGTTGTATACAGTGGAAGGAAAGGTAAAAGATTCAATAAAGAAAGGGATGAATTGGTTCAAAAGCAGGTGTAAGAGAATCTTGTATGGCTTTTGA

Protein sequence

MTMEGVHRRPNKGGRNLEIIDVRKLSENKMHLNQSRRRAAMDPSSVKPRVIKTLESSKTSTEKLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF

Homology

[Close]

BLAST of ClCG06G009930 vs. TrEMBL
Match: A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.3e-37
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRNLEIIDVRKLSENKMHLNQSRRRAAMDPSSVKPRVIKTL-ESSKTST 62
           MEGVHRRPNKG RNL IIDVRKLSENK+HLNQS R++ M+PSSVKPR +KT  ESSKTS 
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 63  EKLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
            K W K  E+KRR+RVAKYKLYTVEGKVKDSI+KG+NWFK +  RI+ GF
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of ClCG06G009930 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-35
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRNLEIIDVRKLSENKMHLNQSRRRAAMDPSSVKPRVIKTLESSKTSTE 62
           MEG+H  PNKGGR+LE+IDVRKLS NK++LNQS+RR  +DPS VK  V KT E SK+  +
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 63  KLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
           K WWK PEM+RRQRVAKYKLY VEGKVK SIKKG+ W K++C RI+ GF
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of ClCG06G009930 vs. TrEMBL
Match: M5W2H8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024789mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-15
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 13  GGRNLEIIDVRKLSENK-MHLNQSRRRAAMDPSSVKPRVI--------KTLESSKTSTEK 72
           G RNL++++VR+LSEN+ M++ +S    +  P  +K R          K  +   +   K
Sbjct: 13  GCRNLDMVNVRRLSENRTMYMGRSHLDPSWAPYPMKTRQRDIQLRIGGKKPKERSSKPSK 72

Query: 73  LWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRIL 109
           LWW DPE KRR RVA+YKLY  EGKVK S+KKG  WFK +C  I+
Sbjct: 73  LWWNDPEFKRRGRVARYKLYGAEGKVKRSLKKGYRWFKRKCLEIV 117

[Close]

BLAST of ClCG06G009930 vs. TrEMBL
Match: A0A061F3Z2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-15
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 1


Query: 3   MEGVHRRPNK-------GGRNLEIIDVRKLSE-NKMHLNQSRRRAAMDPSSV--KPRVIK 62
           ME   RRP+        GGRN EI D   L   NK++  +S +  A+DPS    K    K
Sbjct: 1   MEEYFRRPSYRPAAAGVGGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKK 60

Query: 63  TLESSKTSTEKLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
             +    +T K WW +P+MKR++R+AKYK++ +EGK+K+S+KKG  W K +  +I++G+
Sbjct: 61  KRKEESRTTSKSWWNEPKMKRKRRLAKYKMFALEGKLKESLKKGSRWIKKKYCKIVHGY 119

[Close]

BLAST of ClCG06G009930 vs. TrEMBL
Match: A0A067H7X9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045042mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-14
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1


Query: 5   GVHRRPNKGGRNLEIIDVRKLSENKMHLNQSRRRAAMDPSSVKPRVIKTLESSKTSTEKL 64
           G  +RP  G R LEI+ V   S     +  ++  A  D   + PR+ +  +S   S +  
Sbjct: 7   GSGQRPYGGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRMPR--QSHDASLKPW 66

Query: 65  WWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYG 111
            + DPEMKRR+R+AKYK+YTVEGKVK S++KG+ W K++C +I++G
Sbjct: 67  GFTDPEMKRRKRIAKYKVYTVEGKVKASLRKGLRWIKNKCSQIVHG 110

[Close]

BLAST of ClCG06G009930 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 73.6 bits (179), Expect = 8.9e-14
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 1


Query: 12  KGGRNLEIIDVR--KLSENKMHLNQSRRRAAMDPSSV------KPRVIKTLESSKTSTE- 71
           +G RNL++++    KL      + +SRR  +   + +      K   ++   SS  ST  
Sbjct: 16  EGDRNLQLVNPADLKLVRGIYVVRESRRNRSPIKTDIWRKMSYKDMPVRPRRSSSHSTLF 75

Query: 72  KLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYG 111
           K WW DPE+KR++RVAKYKLY+ EGK+K +++K   W K +C +I++G
Sbjct: 76  KGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of ClCG06G009930 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-10
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1


Query: 68  DPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
           D EMKR++R+A+YK YTVEGKVK ++K G  W K++C +I++ F
Sbjct: 67  DAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of ClCG06G009930 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 56  SSKTSTEKLWWK--DPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYG 111
           +SKT T    W+  D E KR++R+A YK Y +EGKVK ++KKG +W K R   I++G
Sbjct: 54  TSKTRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of ClCG06G009930 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-08
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1


Query: 68  DPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
           DPE++R++RVA YK+Y VEGKVK S +    W K R  +++YG+
Sbjct: 61  DPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGW 104

[Close]

BLAST of ClCG06G009930 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-08
Identity = 21/55 (38.18%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 55  ESSKTSTEKLW-WKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRIL 109
           +  ++S+   W + DP+++R++RV  Y+ YTVEGK+K S +K   W K +C ++L
Sbjct: 61  KKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

[Close]

BLAST of ClCG06G009930 vs. NCBI nr
Match: gi|659082109|ref|XP_008441676.1| (PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 8.6e-43
Identity = 88/112 (78.57%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 1   MTMEGVHRRPNKGGRNLEIIDVRKLSENKMHLNQSRRRAAMDPSSVKPRVIKTL-ESSKT 60
           MTME VHRRPNKG RNL+IIDVRKLSENKMHLNQSRR + +DPSS+KPR IKT  ESSK 
Sbjct: 1   MTMERVHRRPNKGDRNLKIIDVRKLSENKMHLNQSRRHSTIDPSSMKPRAIKTTSESSKA 60

Query: 61  STEKLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
           ST KLWWK+ EMKRR+RVAKYKLYTVEG+VK+SI+KG+NWFK RC RI+ GF
Sbjct: 61  STVKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRIISGF 112

[Close]

BLAST of ClCG06G009930 vs. NCBI nr
Match: gi|700206328|gb|KGN61447.1| (hypothetical protein Csa_2G123580 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRNLEIIDVRKLSENKMHLNQSRRRAAMDPSSVKPRVIKTL-ESSKTST 62
           MEGVHRRPNKG RNL IIDVRKLSENK+HLNQS R++ M+PSSVKPR +KT  ESSKTS 
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 63  EKLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
            K W K  E+KRR+RVAKYKLYTVEGKVKDSI+KG+NWFK +  RI+ GF
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of ClCG06G009930 vs. NCBI nr
Match: gi|700201003|gb|KGN56136.1| (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-35
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRNLEIIDVRKLSENKMHLNQSRRRAAMDPSSVKPRVIKTLESSKTSTE 62
           MEG+H  PNKGGR+LE+IDVRKLS NK++LNQS+RR  +DPS VK  V KT E SK+  +
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 63  KLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
           K WWK PEM+RRQRVAKYKLY VEGKVK SIKKG+ W K++C RI+ GF
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of ClCG06G009930 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 3   MEGVHRRPNKGGRNLEIIDVRKLSENKMHLNQSRRRAAMDPSSVKPRVIKTLESSKTSTE 62
           MEG+H   NKGGR+LE++DVRKLSENKM+LNQS+RR  +DPS VK  V KT E SK   +
Sbjct: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSKM--K 60

Query: 63  KLWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRILYGF 112
           K WWK PEMKRRQRVAKYKLY VEGKVK SIKKG  W K++C RI+ GF
Sbjct: 61  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

[Close]

BLAST of ClCG06G009930 vs. NCBI nr
Match: gi|595833761|ref|XP_007206730.1| (hypothetical protein PRUPE_ppa024789mg [Prunus persica])

HSP 1 Score: 89.4 bits (220), Expect = 4.4e-15
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 13  GGRNLEIIDVRKLSENK-MHLNQSRRRAAMDPSSVKPRVI--------KTLESSKTSTEK 72
           G RNL++++VR+LSEN+ M++ +S    +  P  +K R          K  +   +   K
Sbjct: 13  GCRNLDMVNVRRLSENRTMYMGRSHLDPSWAPYPMKTRQRDIQLRIGGKKPKERSSKPSK 72

Query: 73  LWWKDPEMKRRQRVAKYKLYTVEGKVKDSIKKGMNWFKSRCKRIL 109
           LWW DPE KRR RVA+YKLY  EGKVK S+KKG  WFK +C  I+
Sbjct: 73  LWWNDPEFKRRGRVARYKLYGAEGKVKRSLKKGYRWFKRKCLEIV 117

The following BLAST results are available for this feature:

BLAST of ClCG06G009930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL30_CUCSA	8.3e-37	74.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1	[more]
A0A0A0L7N5_CUCSA	1.6e-35	67.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1	[more]
M5W2H8_PRUPE	3.1e-15	44.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024789mg PE=4 SV=1	[more]
A0A061F3Z2_THECC	4.0e-15	39.50	Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1	[more]
A0A067H7X9_CITSI	5.8e-14	41.51	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045042mg PE=4 SV=1	[more]

BLAST of ClCG06G009930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	8.9e-14	37.04	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	7.8e-10	54.55	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	1.3e-09	47.37	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	2.5e-08	50.00	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	3.3e-08	38.18	Protein of unknown function (DUF3511)	[more]

BLAST of ClCG06G009930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082109\|ref\|XP_008441676.1\|	8.6e-43	78.57	PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo]	[more]
gi\|700206328\|gb\|KGN61447.1\|	1.2e-36	74.55	hypothetical protein Csa_2G123580 [Cucumis sativus]	[more]
gi\|700201003\|gb\|KGN56136.1\|	2.3e-35	67.89	hypothetical protein Csa_3G077700 [Cucumis sativus]	[more]
gi\|659126920\|ref\|XP_008463430.1\|	1.5e-34	68.81	PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo]	[more]
gi\|595833761\|ref\|XP_007206730.1\|	4.4e-15	44.76	hypothetical protein PRUPE_ppa024789mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009930.1	ClCG06G009930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 66..110 score: 2.9
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 33..111 score: 1.6
None	No IPR available	PANTHER	PTHR33193:SF1	SUBFAMILY NOT NAMED	coord: 33..111 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G009930	Cla000987	Watermelon (97103) v1	wcgwmB344
ClCG06G009930	Cla97C06G119390	Watermelon (97103) v2	wcgwmbB273
ClCG06G009930	CmaCh15G014410	Cucurbita maxima (Rimu)	cmawcgB268
ClCG06G009930	Lsi09G010790	Bottle gourd (USVL1VR-Ls)	lsiwcgB031
ClCG06G009930	Carg19740	Silver-seed gourd	carwcgB0830

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G009930	Silver-seed gourd	carwcgB0717
ClCG06G009930	Cucumber (Chinese Long) v3	cucwcgB159
ClCG06G009930	Wax gourd	wcgwgoB497
ClCG06G009930	Cucumber (Gy14) v1	cgywcgB464
ClCG06G009930	Cucurbita moschata (Rifu)	cmowcgB258
ClCG06G009930	Wild cucumber (PI 183967)	cpiwcgB154
ClCG06G009930	Cucumber (Chinese Long) v2	cuwcgB151
ClCG06G009930	Melon (DHL92) v3.5.1	mewcgB391
ClCG06G009930	Watermelon (97103) v1	wcgwmB349
ClCG06G009930	Cucurbita pepo (Zucchini)	cpewcgB177
ClCG06G009930	Cucumber (Gy14) v2	cgybwcgB141
ClCG06G009930	Melon (DHL92) v3.6.1	medwcgB381