Csa2G123580 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G123580
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative ABC superfamily ATP binding cassette transporter; contains IPR021899 (Protein of unknown function DUF3511)
Location	Chr2 : 8286248 .. 8286815 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATACTATGATTAAGAAATCCCATAATCACGGCTCTTTTCTCATTCCACCAGAGGTTTTCCCTCTTTTCTCTTCCCCTAAAAAGCCAAAAAGAGAGAAACATACAGAAAGAGAGAGGATGATGGAAGGGGTCCATCGTCGTCCAAACAAGGGCGATCGGAACCTCAGAATCATAGACGTGAGAAAACTAAGCGAAAACAAGATACACCTAAACCAATCAGGTCGTCAATCTACCATGAATCCATCATCAGTGAAACCACGTGGGATGAAGACAGCATCAGAATCCTCGAAAACATCAGGTGGAAAGTCATGGGGGAAGAAATTAGAAGTGAAAAGGCGACGACGCGTTGCAAAGTACAAGTTGTATACAGTGGAAGGGAAGGTCAAAGATTCCATAAGAAAAGGGATAAATTGGTTCAAATGCAAGTATACAAGAATCATGTCTGGATTTTGAATTTTAAATTTTCTCTTCTTTTTTTCAATTTTTGTAAGAAAACAAACTTCAACTTTCATGTCCTTTTCTTCATCTTCTTTTTCAGTGCAATGATAACATTGTCAACTTTCATG

mRNA sequence

ATGATTAAGAAATCCCATAATCACGGCTCTTTTCTCATTCCACCAGAGGTTTTCCCTCTTTTCTCTTCCCCTAAAAAGCCAAAAAGAGAGAAACATACAGAAAGAGAGAGGATGATGGAAGGGGTCCATCGTCGTCCAAACAAGGGCGATCGGAACCTCAGAATCATAGACGTGAGAAAACTAAGCGAAAACAAGATACACCTAAACCAATCAGGTCGTCAATCTACCATGAATCCATCATCAGTGAAACCACGTGGGATGAAGACAGCATCAGAATCCTCGAAAACATCAGGTGGAAAGTCATGGGGGAAGAAATTAGAAGTGAAAAGGCGACGACGCGTTGCAAAGTACAAGTTGTATACAGTGGAAGGGAAGGTCAAAGATTCCATAAGAAAAGGGATAAATTGGTTCAAATGCAAGTATACAAGAATCATGTCTGGATTTTGA

Coding sequence (CDS)

ATGATTAAGAAATCCCATAATCACGGCTCTTTTCTCATTCCACCAGAGGTTTTCCCTCTTTTCTCTTCCCCTAAAAAGCCAAAAAGAGAGAAACATACAGAAAGAGAGAGGATGATGGAAGGGGTCCATCGTCGTCCAAACAAGGGCGATCGGAACCTCAGAATCATAGACGTGAGAAAACTAAGCGAAAACAAGATACACCTAAACCAATCAGGTCGTCAATCTACCATGAATCCATCATCAGTGAAACCACGTGGGATGAAGACAGCATCAGAATCCTCGAAAACATCAGGTGGAAAGTCATGGGGGAAGAAATTAGAAGTGAAAAGGCGACGACGCGTTGCAAAGTACAAGTTGTATACAGTGGAAGGGAAGGTCAAAGATTCCATAAGAAAAGGGATAAATTGGTTCAAATGCAAGTATACAAGAATCATGTCTGGATTTTGA

Protein sequence

MIKKSHNHGSFLIPPEVFPLFSSPKKPKREKHTERERMMEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF*

Homology

[Close]

BLAST of Csa2G123580 vs. TrEMBL
Match: A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 8.2e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MIKKSHNHGSFLIPPEVFPLFSSPKKPKREKHTERERMMEGVHRRPNKGDRNLRIIDVRK 60
           MIKKSHNHGSFLIPPEVFPLFSSPKKPKREKHTERERMMEGVHRRPNKGDRNLRIIDVRK
Sbjct: 1   MIKKSHNHGSFLIPPEVFPLFSSPKKPKREKHTERERMMEGVHRRPNKGDRNLRIIDVRK 60

Query: 61  LSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWGKKLEVKRRRRVAKYKLY 120
           LSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWGKKLEVKRRRRVAKYKLY
Sbjct: 61  LSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWGKKLEVKRRRRVAKYKLY 120

Query: 121 TVEGKVKDSIRKGINWFKCKYTRIMSGF 149
           TVEGKVKDSIRKGINWFKCKYTRIMSGF
Sbjct: 121 TVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of Csa2G123580 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.5e-28
Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 1


Query: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98
           MEG+H  PNKG R+L +IDVRKLS NK++LNQS R++ ++PS VK    KT SE SK+  
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKT-SEPSKSCM 60

Query: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
            K W KK E++RR+RVAKYKLY VEGKVK SI+KGI W K K +RI+SGF
Sbjct: 61  KKPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of Csa2G123580 vs. TrEMBL
Match: A0A061F3Z2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 1


Query: 39  MEGVHRRPNK-------GDRNLRIIDVRKLSE-NKIHLNQSGRQSTMNPSSV--KPRGMK 98
           ME   RRP+        G RN  I D   L   NK++  +S +   ++PS    K    K
Sbjct: 1   MEEYFRRPSYRPAAAGVGGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKK 60

Query: 99  TASESSKTSGGKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
              E S+T+  KSW  + ++KR+RR+AKYK++ +EGK+K+S++KG  W K KY +I+ G+
Sbjct: 61  KRKEESRTTS-KSWWNEPKMKRKRRLAKYKMFALEGKLKESLKKGSRWIKKKYCKIVHGY 119

[Close]

BLAST of Csa2G123580 vs. TrEMBL
Match: M1D4L6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031801 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 50  DRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWG-KKLEV 109
           DR L I+     S    ++NQ  R  + +   V  +G   +  ++  S  K WG    E+
Sbjct: 13  DRRLEIV-----SGKGFNINQVNRARSPDLDGVTSKGTWPSQVAAAPSSNKPWGFNDPEM 72

Query: 110 KRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
           KRR+R+AKYK+YT+EGKVK SIR G+ WFK K + I+ G+
Sbjct: 73  KRRKRIAKYKVYTIEGKVKTSIRNGLRWFKNKCSEIIHGY 107

[Close]

BLAST of Csa2G123580 vs. TrEMBL
Match: K4CVE2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 50  DRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWG-KKLEV 109
           DR L II     S    ++NQ  R  + + + V  +G   +  ++  S  K WG    E+
Sbjct: 13  DRRLEII-----SGKGFNINQVNRARSPDLAGVTSKGTWPSQVAAAPSWNKPWGFNDPEM 72

Query: 110 KRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
           KRR+R+AKYK+YT+EGKVK SIR G+ WFK K + I+ G+
Sbjct: 73  KRRKRIAKYKVYTIEGKVKTSIRNGLRWFKNKCSEIIHGY 107

[Close]

BLAST of Csa2G123580 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-10
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1


Query: 48  KGDRNLRIIDVRKLSENK-IHLNQSGRQSTM-------NPSSVKPRGMKTASESSKTSGG 107
           +GDRNL++++   L   + I++ +  R++            S K   ++    SS ++  
Sbjct: 16  EGDRNLQLVNPADLKLVRGIYVVRESRRNRSPIKTDIWRKMSYKDMPVRPRRSSSHSTLF 75

Query: 108 KSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSG 148
           K W    E+KR+RRVAKYKLY+ EGK+K ++RK   W K + ++I+ G
Sbjct: 76  KGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of Csa2G123580 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-09
Identity = 36/112 (32.14%), Postives = 53/112 (47.32%), Query Frame = 1


Query: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPS-SVKPRGMKTASESSKTS 98
           ME   R+   GD  ++I           H NQ G   + + S   +   +    +    +
Sbjct: 1   MEDFGRQRPYGDGGMQI--------QPYHGNQGGDFRSYSASYGTRENNIYDVKKEKSIA 60

Query: 99  GGKSWG-KKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
             KSWG    E++R++RVA YK+Y VEGKVK S R    W K +YT+++ G+
Sbjct: 61  RSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGW 104

[Close]

BLAST of Csa2G123580 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1


Query: 79  PSSVKPRGMKTASESSKTSGGKSWG-KKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWF 138
           PS   P G   A  S+ +S  +  G    E+KR++R+A+YK YTVEGKVK +++ G  W 
Sbjct: 40  PSLPPPPGKVAAGRSNASSSLRIGGLSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWI 99

Query: 139 KCKYTRIMSGF 149
           K K  +I+  F
Sbjct: 100 KNKCCQIVHRF 110

[Close]

BLAST of Csa2G123580 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1


Query: 107 EVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSG 148
           E KR++R+A YK Y +EGKVK +++KG +W K +Y+ I+ G
Sbjct: 70  ETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of Csa2G123580 vs. TAIR10
Match: AT3G13910.1 (AT3G13910.1 Protein of unknown function (DUF3511))

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 28/71 (39.44%), Postives = 40/71 (56.34%), Query Frame = 1


Query: 69  NQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWG-KKLEVKRRRRVAKYKLYTVEGKVK 128
           + +G QS  N   +K +  K+   + + +  +SW     E +R+RRVA YK+Y+VE K+K
Sbjct: 27  DSAGDQSQTNDYQLKIKKSKSVPNADRAAS-RSWSFSDPESRRKRRVAGYKVYSVEQKMK 86

Query: 129 DSIRKGINWFK 139
            SIRK   WFK
Sbjct: 87  GSIRKSFKWFK 96

[Close]

BLAST of Csa2G123580 vs. NCBI nr
Match: gi|700206328|gb|KGN61447.1| (hypothetical protein Csa_2G123580 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 1.2e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MIKKSHNHGSFLIPPEVFPLFSSPKKPKREKHTERERMMEGVHRRPNKGDRNLRIIDVRK 60
           MIKKSHNHGSFLIPPEVFPLFSSPKKPKREKHTERERMMEGVHRRPNKGDRNLRIIDVRK
Sbjct: 1   MIKKSHNHGSFLIPPEVFPLFSSPKKPKREKHTERERMMEGVHRRPNKGDRNLRIIDVRK 60

Query: 61  LSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWGKKLEVKRRRRVAKYKLY 120
           LSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWGKKLEVKRRRRVAKYKLY
Sbjct: 61  LSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWGKKLEVKRRRRVAKYKLY 120

Query: 121 TVEGKVKDSIRKGINWFKCKYTRIMSGF 149
           TVEGKVKDSIRKGINWFKCKYTRIMSGF
Sbjct: 121 TVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of Csa2G123580 vs. NCBI nr
Match: gi|659082109|ref|XP_008441676.1| (PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 2.8e-41
Identity = 86/110 (78.18%), Postives = 97/110 (88.18%), Query Frame = 1


Query: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98
           ME VHRRPNKGDRNL+IIDVRKLSENK+HLNQS R ST++PSS+KPR +KT SESSK S 
Sbjct: 3   MERVHRRPNKGDRNLKIIDVRKLSENKMHLNQSRRHSTIDPSSMKPRAIKTTSESSKAST 62

Query: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
            K W K  E+KRRRRVAKYKLYTVEG+VK+SIRKGINWFKC+ TRI+SGF
Sbjct: 63  VKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRIISGF 112

[Close]

BLAST of Csa2G123580 vs. NCBI nr
Match: gi|700201003|gb|KGN56136.1| (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 1


Query: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98
           MEG+H  PNKG R+L +IDVRKLS NK++LNQS R++ ++PS VK    KT SE SK+  
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKT-SEPSKSCM 60

Query: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
            K W KK E++RR+RVAKYKLY VEGKVK SI+KGI W K K +RI+SGF
Sbjct: 61  KKPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of Csa2G123580 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 7.5e-26
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98
           MEG+H   NKG R+L ++DVRKLSENK++LNQS R++ ++PS VK    KT   S     
Sbjct: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSKMK-- 60

Query: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
            KSW KK E+KRR+RVAKYKLY VEGKVK SI+KG  W K K +RI+SGF
Sbjct: 61  -KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

[Close]

BLAST of Csa2G123580 vs. NCBI nr
Match: gi|590644563|ref|XP_007031116.1| (Uncharacterized protein TCM_026743 [Theobroma cacao])

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 1


Query: 39  MEGVHRRPNK-------GDRNLRIIDVRKLSE-NKIHLNQSGRQSTMNPSSV--KPRGMK 98
           ME   RRP+        G RN  I D   L   NK++  +S +   ++PS    K    K
Sbjct: 1   MEEYFRRPSYRPAAAGVGGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKK 60

Query: 99  TASESSKTSGGKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 149
              E S+T+  KSW  + ++KR+RR+AKYK++ +EGK+K+S++KG  W K KY +I+ G+
Sbjct: 61  KRKEESRTTS-KSWWNEPKMKRKRRLAKYKMFALEGKLKESLKKGSRWIKKKYCKIVHGY 119

The following BLAST results are available for this feature:

BLAST of Csa2G123580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL30_CUCSA	8.2e-80	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1	[more]
A0A0A0L7N5_CUCSA	9.5e-28	61.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1	[more]
A0A061F3Z2_THECC	1.2e-11	37.50	Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1	[more]
M1D4L6_SOLTU	1.8e-10	40.00	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031801 PE=4 SV=1	[more]
K4CVE2_SOLLC	1.8e-10	41.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Csa2G123580 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	2.7e-10	33.33	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	6.8e-09	32.14	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	2.0e-08	40.85	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	2.2e-07	48.78	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	4.8e-07	39.44	Protein of unknown function (DUF3511)	[more]

BLAST of Csa2G123580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206328\|gb\|KGN61447.1\|	1.2e-79	100.00	hypothetical protein Csa_2G123580 [Cucumis sativus]	[more]
gi\|659082109\|ref\|XP_008441676.1\|	2.8e-41	78.18	PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo]	[more]
gi\|700201003\|gb\|KGN56136.1\|	1.4e-27	61.82	hypothetical protein Csa_3G077700 [Cucumis sativus]	[more]
gi\|659126920\|ref\|XP_008463430.1\|	7.5e-26	59.09	PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo]	[more]
gi\|590644563\|ref\|XP_007031116.1\|	1.8e-11	37.50	Uncharacterized protein TCM_026743 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU141993	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G123580.1	Csa2G123580.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU141993	CU141993	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 106..147 score: 7.4
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 64..148 score: 2.8
None	No IPR available	PANTHER	PTHR33193:SF1	SUBFAMILY NOT NAMED	coord: 64..148 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G123580	Cla000987	Watermelon (97103) v1	cuwmB177
Csa2G123580	MELO3C008511	Melon (DHL92) v3.5.1	cumeB143
Csa2G123580	Lsi09G010790	Bottle gourd (USVL1VR-Ls)	culsiB091
Csa2G123580	MELO3C008511.2	Melon (DHL92) v3.6.1	cumedB126
Csa2G123580	Bhi12G001192	Wax gourd	cuwgoB124
Csa2G123580	Cucsa.266180	Cucumber (Gy14) v1	cgycuB382
Csa2G123580	CmaCh15G014410	Cucurbita maxima (Rimu)	cmacuB279
Csa2G123580	CmoCh15G015180	Cucurbita moschata (Rifu)	cmocuB266
Csa2G123580	CsGy2G009170	Cucumber (Gy14) v2	cgybcuB056
Csa2G123580	Carg19740	Silver-seed gourd	carcuB0869

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G123580	Cucurbita moschata (Rifu)	cmocuB340
Csa2G123580	Watermelon (Charleston Gray)	cuwcgB151
Csa2G123580	Cucurbita pepo (Zucchini)	cpecuB166
Csa2G123580	Cucurbita pepo (Zucchini)	cpecuB128
Csa2G123580	Silver-seed gourd	carcuB0755
Csa2G123580	Watermelon (97103) v2	cuwmbB145