CmoCh15G015180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G015180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DUF3511 domain protein
Location	Cmo_Chr15 : 10304317 .. 10304649 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGGTCCACCGTCGTCCAAGCAAGGGCGGTGGACGGAGCCTAGAAGTGATAGACGTGAGAAAACTGAGCGAAAACCAGGTGCATCTAAGCCAATCACGACGTCCGGCGGCGATGGATCCGTCGGCGGTGAAGCCACGCGTGGTGAAGACAGGGGAAGGGTCAAGAGGAGGTTCAGGGAATTCATGGTGGAAGAACCCGGAAATGAAGAGGCAACGACGTGTGGCGAAGTACAAGTTGTATACAGTGGAAGGGAGGGTAAAGGATTCCATAAAGAAAGGGATGAGATGGTTCAAAACCAGGTGTAGCAGAATCGTGTATGGATTTTAA

mRNA sequence

ATGGAAGGGGTCCACCGTCGTCCAAGCAAGGGCGGTGGACGGAGCCTAGAAGTGATAGACGTGAGAAAACTGAGCGAAAACCAGGTGCATCTAAGCCAATCACGACGTCCGGCGGCGATGGATCCGTCGGCGGTGAAGCCACGCGTGGTGAAGACAGGGGAAGGGTCAAGAGGAGGTTCAGGGAATTCATGGTGGAAGAACCCGGAAATGAAGAGGCAACGACGTGTGGCGAAGTACAAGTTGTATACAGTGGAAGGGAGGGTAAAGGATTCCATAAAGAAAGGGATGAGATGGTTCAAAACCAGGTGTAGCAGAATCGTGTATGGATTTTAA

Coding sequence (CDS)

ATGGAAGGGGTCCACCGTCGTCCAAGCAAGGGCGGTGGACGGAGCCTAGAAGTGATAGACGTGAGAAAACTGAGCGAAAACCAGGTGCATCTAAGCCAATCACGACGTCCGGCGGCGATGGATCCGTCGGCGGTGAAGCCACGCGTGGTGAAGACAGGGGAAGGGTCAAGAGGAGGTTCAGGGAATTCATGGTGGAAGAACCCGGAAATGAAGAGGCAACGACGTGTGGCGAAGTACAAGTTGTATACAGTGGAAGGGAGGGTAAAGGATTCCATAAAGAAAGGGATGAGATGGTTCAAAACCAGGTGTAGCAGAATCGTGTATGGATTTTAA

Homology

[Close]

BLAST of CmoCh15G015180 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-31
Identity = 71/110 (64.55%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 1   MEGVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSRRPAAMDPSAVKPRVVKTGEGSRGGS 60
           MEG+H  P+K GGRSLEVIDVRKLS N+V+L+QS+R   +DPS VK  V KT E S+   
Sbjct: 1   MEGLHHHPNK-GGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCM 60

Query: 61  GNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
              WWK PEM+R++RVAKYKLY VEG+VK SIKKG+RW KT+CSRI+ GF
Sbjct: 61  KKPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of CmoCh15G015180 vs. TrEMBL
Match: A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 1   MEGVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSRRPAAMDPSAVKPRVVKTG-EGSRGG 60
           MEGVHRRP+KG  R+L +IDVRKLSEN++HL+QS R + M+PS+VKPR +KT  E S+  
Sbjct: 39  MEGVHRRPNKGD-RNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTS 98

Query: 61  SGNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
            G SW K  E+KR+RRVAKYKLYTVEG+VKDSI+KG+ WFK + +RI+ GF
Sbjct: 99  GGKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of CmoCh15G015180 vs. TrEMBL
Match: A0A061F3Z2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.9e-15
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1


Query: 1   MEGVHRRPSKG------GGRSLEVIDVRKLSE-NQVHLSQSRRPAAMDPSAV--KPRVVK 60
           ME   RRPS        GGR+ E+ D   L   N+V+  +S +P A+DPS    K    K
Sbjct: 1   MEEYFRRPSYRPAAAGVGGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKK 60

Query: 61  TGEGSRGGSGNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
             +     +  SWW  P+MKR+RR+AKYK++ +EG++K+S+KKG RW K +  +IV+G+
Sbjct: 61  KRKEESRTTSKSWWNEPKMKRKRRLAKYKMFALEGKLKESLKKGSRWIKKKYCKIVHGY 119

[Close]

BLAST of CmoCh15G015180 vs. TrEMBL
Match: A0A067JWB1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13997 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 42/103 (40.78%), Postives = 67/103 (65.05%), Query Frame = 1


Query: 9   SKGGGRSLEVIDVRKL-SENQVHLSQSRRPAAMDPSAVKPRVVKTGEGSRGGSGNSWWKN 68
           S GG R  E++  R   + NQ++ +   RP + DP ++ PR  +    +R  S    + +
Sbjct: 8   SYGGDRRFEIVSGRSFGTSNQIYAT---RPQSPDPPSIPPRATRQ---TRTTSTPWGFSD 67

Query: 69  PEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
           PE KR++R+AKYK+YTVEG+VK S+K G+RW K +CS+I++G+
Sbjct: 68  PETKRKKRIAKYKVYTVEGKVKTSLKNGLRWIKNKCSKIIHGY 104

[Close]

BLAST of CmoCh15G015180 vs. TrEMBL
Match: A0A067H7X9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045042mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 3   GVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSRRPAAMDPSAVKPRVVKTGEGSRGGSGN 62
           G  +RP  GG R LE++ V   S     +  ++  A  D   + PR+ +    S   S  
Sbjct: 7   GSGQRPY-GGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRMPRQ---SHDASLK 66

Query: 63  SW-WKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYG 110
            W + +PEMKR++R+AKYK+YTVEG+VK S++KG+RW K +CS+IV+G
Sbjct: 67  PWGFTDPEMKRRKRIAKYKVYTVEGKVKASLRKGLRWIKNKCSQIVHG 110

[Close]

BLAST of CmoCh15G015180 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-12
Identity = 25/46 (54.35%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 64  WWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYG 110
           WW +PE+KR+RRVAKYKLY+ EG++K +++K  +W K +CS+I++G
Sbjct: 78  WWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of CmoCh15G015180 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-10
Identity = 37/105 (35.24%), Postives = 56/105 (53.33%), Query Frame = 1


Query: 11  GGGRSLEVIDVRKL----SENQVHLSQSRRPAAMDPSAVKPRVVKTGEGSRGGSGN-SWW 70
           G G+    +D RK       NQ++ ++   P+   P    P  V  G  +   S      
Sbjct: 10  GSGQRTYGVDRRKEIVSGKRNQIYGTRDYPPSLPPP----PGKVAAGRSNASSSLRIGGL 69

Query: 71  KNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
            + EMKR++R+A+YK YTVEG+VK ++K G RW K +C +IV+ F
Sbjct: 70  SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of CmoCh15G015180 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1


Query: 69  EMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYG 110
           E++R++RVA Y +Y VEGRVK S+KK  +WFK  CS  VYG
Sbjct: 85  EIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 125

[Close]

BLAST of CmoCh15G015180 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-08
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1


Query: 67  NPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
           +PE++R++RVA YK+Y VEG+VK S +   RW K R +++VYG+
Sbjct: 61  DPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGW 104

[Close]

BLAST of CmoCh15G015180 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 69  EMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYG 110
           E KR++R+A YK Y +EG+VK ++KKG  W K R S I++G
Sbjct: 70  ETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of CmoCh15G015180 vs. NCBI nr
Match: gi|659082109|ref|XP_008441676.1| (PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 9.4e-34
Identity = 73/111 (65.77%), Postives = 93/111 (83.78%), Query Frame = 1


Query: 1   MEGVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSRRPAAMDPSAVKPRVVKT-GEGSRGG 60
           ME VHRRP+KG  R+L++IDVRKLSEN++HL+QSRR + +DPS++KPR +KT  E S+  
Sbjct: 3   MERVHRRPNKGD-RNLKIIDVRKLSENKMHLNQSRRHSTIDPSSMKPRAIKTTSESSKAS 62

Query: 61  SGNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
           +   WWKN EMKR+RRVAKYKLYTVEGRVK+SI+KG+ WFK RC+RI+ GF
Sbjct: 63  TVKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRIISGF 112

[Close]

BLAST of CmoCh15G015180 vs. NCBI nr
Match: gi|700201003|gb|KGN56136.1| (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 4.4e-31
Identity = 71/110 (64.55%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 1   MEGVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSRRPAAMDPSAVKPRVVKTGEGSRGGS 60
           MEG+H  P+K GGRSLEVIDVRKLS N+V+L+QS+R   +DPS VK  V KT E S+   
Sbjct: 1   MEGLHHHPNK-GGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCM 60

Query: 61  GNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
              WWK PEM+R++RVAKYKLY VEG+VK SIKKG+RW KT+CSRI+ GF
Sbjct: 61  KKPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of CmoCh15G015180 vs. NCBI nr
Match: gi|700206328|gb|KGN61447.1| (hypothetical protein Csa_2G123580 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.7e-30
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 1   MEGVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSRRPAAMDPSAVKPRVVKTG-EGSRGG 60
           MEGVHRRP+KG  R+L +IDVRKLSEN++HL+QS R + M+PS+VKPR +KT  E S+  
Sbjct: 39  MEGVHRRPNKGD-RNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTS 98

Query: 61  SGNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
            G SW K  E+KR+RRVAKYKLYTVEG+VKDSI+KG+ WFK + +RI+ GF
Sbjct: 99  GGKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of CmoCh15G015180 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-30
Identity = 71/110 (64.55%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 1   MEGVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSRRPAAMDPSAVKPRVVKTGEGSRGGS 60
           MEG+H   +KGG RSLEV+DVRKLSEN+++L+QS+R   +DPS VK  V KT E S+   
Sbjct: 1   MEGLHHHQNKGG-RSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSK--M 60

Query: 61  GNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
             SWWK PEMKR++RVAKYKLY VEG+VK SIKKG RW KT+CSRI+ GF
Sbjct: 61  KKSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

[Close]

BLAST of CmoCh15G015180 vs. NCBI nr
Match: gi|590644563|ref|XP_007031116.1| (Uncharacterized protein TCM_026743 [Theobroma cacao])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1


Query: 1   MEGVHRRPSKG------GGRSLEVIDVRKLSE-NQVHLSQSRRPAAMDPSAV--KPRVVK 60
           ME   RRPS        GGR+ E+ D   L   N+V+  +S +P A+DPS    K    K
Sbjct: 1   MEEYFRRPSYRPAAAGVGGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKK 60

Query: 61  TGEGSRGGSGNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKTRCSRIVYGF 111
             +     +  SWW  P+MKR+RR+AKYK++ +EG++K+S+KKG RW K +  +IV+G+
Sbjct: 61  KRKEESRTTSKSWWNEPKMKRKRRLAKYKMFALEGKLKESLKKGSRWIKKKYCKIVHGY 119

The following BLAST results are available for this feature:

BLAST of CmoCh15G015180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G015180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7N5_CUCSA	3.0e-31	64.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1	[more]
A0A0A0LL30_CUCSA	1.2e-30	63.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1	[more]
A0A061F3Z2_THECC	8.9e-15	40.34	Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1	[more]
A0A067JWB1_JATCU	1.3e-13	40.78	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13997 PE=4 SV=1	[more]
A0A067H7X9_CITSI	2.4e-12	41.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045042mg PE=4 SV=1	[more]

BLAST of CmoCh15G015180 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	2.8e-12	54.35	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	4.5e-10	35.24	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	1.5e-08	58.54	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	2.5e-08	50.00	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	1.6e-07	51.22	Protein of unknown function (DUF3511)	[more]

BLAST of CmoCh15G015180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082109\|ref\|XP_008441676.1\|	9.4e-34	65.77	PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo]	[more]
gi\|700201003\|gb\|KGN56136.1\|	4.4e-31	64.55	hypothetical protein Csa_3G077700 [Cucumis sativus]	[more]
gi\|700206328\|gb\|KGN61447.1\|	1.7e-30	63.96	hypothetical protein Csa_2G123580 [Cucumis sativus]	[more]
gi\|659126920\|ref\|XP_008463430.1\|	3.7e-30	64.55	PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo]	[more]
gi\|590644563\|ref\|XP_007031116.1\|	1.3e-14	40.34	Uncharacterized protein TCM_026743 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G015180.1	CmoCh15G015180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 65..109 score: 5.4
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 55..110 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G015180	Cucsa.266180	Cucumber (Gy14) v1	cgycmoB0732
CmoCh15G015180	CmaCh15G014410	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G015180	CmaCh04G009490	Cucurbita maxima (Rimu)	cmacmoB699
CmoCh15G015180	Cla000987	Watermelon (97103) v1	cmowmB282
CmoCh15G015180	Csa2G123580	Cucumber (Chinese Long) v2	cmocuB266
CmoCh15G015180	MELO3C008511	Melon (DHL92) v3.5.1	cmomeB268
CmoCh15G015180	Lsi09G010790	Bottle gourd (USVL1VR-Ls)	cmolsiB252
CmoCh15G015180	MELO3C008511.2	Melon (DHL92) v3.6.1	cmomedB302
CmoCh15G015180	CsaV3_2G011280	Cucumber (Chinese Long) v3	cmocucB0324
CmoCh15G015180	Bhi12G001192	Wax gourd	cmowgoB0372
CmoCh15G015180	CsGy2G009170	Cucumber (Gy14) v2	cgybcmoB184
CmoCh15G015180	Carg19740	Silver-seed gourd	carcmoB1151
CmoCh15G015180	Carg00062	Silver-seed gourd	carcmoB0919

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G015180	Wild cucumber (PI 183967)	cmocpiB273
CmoCh15G015180	Watermelon (Charleston Gray)	cmowcgB258
CmoCh15G015180	Watermelon (97103) v1	cmowmB281
CmoCh15G015180	Cucurbita pepo (Zucchini)	cmocpeB269
CmoCh15G015180	Silver-seed gourd	carcmoB1004
CmoCh15G015180	Watermelon (97103) v2	cmowmbB294