CsaV3_2G011280 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTAAGAAATCCCATAATCACGGCTCTTTTCTCATTCCACCAGAGGTTTTCCCTCTTTTCTCTTCCCCTAAAAAGCCAAAAAGAGAGAAACATACAGAAAGAGAGAGGATGATGGAAGGGGTCCATCGTCGTCCAAACAAGGGCGATCGGAACCTCAGAATCATAGACGTGAGAAAACTAAGCGAAAACAAGATACACCTAAACCAATCAGGTCGTCAATCTACCATGAATCCATCATCAGTGAAACCACGTGGGATGAAGACAGCATCAGAATCCTCGAAAACATCAGGTGGAAAGTCATGGGGGAAGAAATTAGAAGTGAAAAGGCGACGACGCGTTGCAAAGTACAAGTTGTATACAGTGGAAGGGAAGGTCAAAGATTCCATAAGAAAAGGGATAAATTGGTTCAAATGCAAGTATACAAGAATCATGTCTGGATTTTGA ATGATTAAGAAATCCCATAATCACGGCTCTTTTCTCATTCCACCAGAGGTTTTCCCTCTTTTCTCTTCCCCTAAAAAGCCAAAAAGAGAGAAACATACAGAAAGAGAGAGGATGATGGAAGGGGTCCATCGTCGTCCAAACAAGGGCGATCGGAACCTCAGAATCATAGACGTGAGAAAACTAAGCGAAAACAAGATACACCTAAACCAATCAGGTCGTCAATCTACCATGAATCCATCATCAGTGAAACCACGTGGGATGAAGACAGCATCAGAATCCTCGAAAACATCAGGTGGAAAGTCATGGGGGAAGAAATTAGAAGTGAAAAGGCGACGACGCGTTGCAAAGTACAAGTTGTATACAGTGGAAGGGAAGGTCAAAGATTCCATAAGAAAAGGGATAAATTGGTTCAAATGCAAGTATACAAGAATCATGTCTGGATTTTGA ATGATTAAGAAATCCCATAATCACGGCTCTTTTCTCATTCCACCAGAGGTTTTCCCTCTTTTCTCTTCCCCTAAAAAGCCAAAAAGAGAGAAACATACAGAAAGAGAGAGGATGATGGAAGGGGTCCATCGTCGTCCAAACAAGGGCGATCGGAACCTCAGAATCATAGACGTGAGAAAACTAAGCGAAAACAAGATACACCTAAACCAATCAGGTCGTCAATCTACCATGAATCCATCATCAGTGAAACCACGTGGGATGAAGACAGCATCAGAATCCTCGAAAACATCAGGTGGAAAGTCATGGGGGAAGAAATTAGAAGTGAAAAGGCGACGACGCGTTGCAAAGTACAAGTTGTATACAGTGGAAGGGAAGGTCAAAGATTCCATAAGAAAAGGGATAAATTGGTTCAAATGCAAGTATACAAGAATCATGTCTGGATTTTGA MIKKSHNHGSFLIPPEVFPLFSSPKKPKREKHTERERMMEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSGGKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF
BLAST of CsaV3_2G011280 vs. NCBI nr
Match: KGN61447.1 (hypothetical protein Csa_2G123580 [Cucumis sativus]) HSP 1 Score: 294.7 bits (753), Expect = 1.8e-76 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. NCBI nr
Match: XP_022151002.1 (uncharacterized protein LOC111019023 [Momordica charantia]) HSP 1 Score: 131.0 bits (328), Expect = 3.5e-27 Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. NCBI nr
Match: KGN56136.1 (hypothetical protein Csa_3G077700 [Cucumis sativus]) HSP 1 Score: 123.2 bits (308), Expect = 7.2e-25 Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. NCBI nr
Match: PHT86019.1 (hypothetical protein T459_08125 [Capsicum annuum]) HSP 1 Score: 71.2 bits (173), Expect = 3.3e-09 Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. NCBI nr
Match: XP_016565833.1 (PREDICTED: uncharacterized protein LOC107864084 [Capsicum annuum] >PHT38767.1 hypothetical protein CQW23_22340 [Capsicum baccatum]) HSP 1 Score: 70.9 bits (172), Expect = 4.2e-09 Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TAIR10
Match: AT3G05725.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 55.5 bits (132), Expect = 3.4e-08 Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TAIR10
Match: AT3G62640.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07 Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TAIR10
Match: AT2G47480.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07 Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06 Identity = 36/112 (32.14%), Postives = 55/112 (49.11%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 45.8 bits (107), Expect = 2.7e-05 Identity = 21/56 (37.50%), Postives = 35/56 (62.50%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TrEMBL
Match: tr|A0A0A0LL30|A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123580 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 1.2e-76 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TrEMBL
Match: tr|A0A0A0L7N5|A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077700 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25 Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TrEMBL
Match: tr|A0A2G2ZVL1|A0A2G2ZVL1_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08125 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09 Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TrEMBL
Match: tr|A0A2G3CT40|A0A2G3CT40_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_07000 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09 Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 0
BLAST of CsaV3_2G011280 vs. TrEMBL
Match: tr|A0A1U8GAU2|A0A1U8GAU2_CAPAN (uncharacterized protein LOC107864084 OS=Capsicum annuum OX=4072 GN=LOC107864084 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09 Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|