Lsi09G006710 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G006710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Winged-helix DNA-binding transcription factor family protein, putative isoform 2
Location	chr09 : 7578047 .. 7579271 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCCCCAGCCGTCAGATCTGCTCTGCCCTTCCTCCCGATCCCCTTCTCTCCCTATTTCCCCTTTTTAAATCCTCCTCTTTCCCCTTCCTCAATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCATCCTCCTCTCTCTCTCTAAAATCTAATCATCTCCGACGTCTCCTCCGCCGCCATGGCTACCGACGATCAACTCAACAACCCTCCACAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGGTACTTCAATTTCTCTCTCTCTCTCTCTCTCTCTGCATTTCTTAATTTTTGAGTTTTTTAATTTAATTTTGAGAAATTTCTTCCACAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGTCGTCCTCCAAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCACGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCGACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGTAGAGGACGGCCGCCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAGTGGAACAAAAACAGAGGATGAGAGAGAGAAATAGAGATAGAGAGAGAGAGAAGAAGATGAAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTAATTTTTTTTTTTTCTAATTTTAAACATTTTTAATTTTACTTCTCTTTTTTTTTTTTTAATGTGTATTACGTGGCGGGTGATGTATGGCTGTAATTCTGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTACCGGCTGTTAGGGCTTTTTTCTCTCTCTTTCCGTCTCTTTTTTCTCTCTTAAATTCTCCCGAAAAAAAAAAAGAAATTAGATTTAATTTATGGAGCCACTTTAACTCTTTTATTTTATTTTTCTTCTTTTTATTTAAT

mRNA sequence

CTATCCCCAGCCGTCAGATCTGCTCTGCCCTTCCTCCCGATCCCCTTCTCTCCCTATTTCCCCTTTTTAAATCCTCCTCTTTCCCCTTCCTCAATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCATCCTCCTCTCTCTCTCTAAAATCTAATCATCTCCGACGTCTCCTCCGCCGCCATGGCTACCGACGATCAACTCAACAACCCTCCACAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGTCGTCCTCCAAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCACGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCGACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGTAGAGGACGGCCGCCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAGTGGAACAAAAACAGAGGATGAGAGAGAGAAATAGAGATAGAGAGAGAGAGAAGAAGATGAAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTAATTTTTTTTTTTTCTAATTTTAAACATTTTTAATTTTACTTCTCTTTTTTTTTTTTTAATGTGTATTACGTGGCGGGTGATGTATGGCTGTAATTCTGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTACCGGCTGTTAGGGCTTTTTTCTCTCTCTTTCCGTCTCTTTTTTCTCTCTTAAATTCTCCCGAAAAAAAAAAAGAAATTAGATTTAATTTATGGAGCCACTTTAACTCTTTTATTTTATTTTTCTTCTTTTTATTTAAT

Coding sequence (CDS)

ATGGCTACCGACGATCAACTCAACAACCCTCCACAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGTCGTCCTCCAAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCACGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCGACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGTAGAGGACGGCCGCCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGA

Protein sequence

MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC

Homology

[Close]

BLAST of Lsi09G006710 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-47
Identity = 115/184 (62.50%), Postives = 133/184 (72.28%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++   N PQ      SLP YPEMI+  +E+LN+ NG +KSAI+K IE+TYG+LP A 
Sbjct: 1   MATEEV--NKPQ------SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA- 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRPPKPK PLPPGTVVSPPRPRG
Sbjct: 61  -TVLGSHLNKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVA-GPPRGRGRPPKVKPA 180
           RP  PKDP AP   PK K T GSGRPRGRP K P+    +AP A    R RGRPPKVKP 
Sbjct: 121 RP--PKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQ 172

Query: 181 VAPV 184
           +  V
Sbjct: 181 LTEV 172

[Close]

BLAST of Lsi09G006710 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-45
Identity = 116/190 (61.05%), Postives = 133/190 (70.00%), Query Frame = 1


Query: 16  PAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AIESLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKV 186
           PKDP  P   P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKV
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKV 198

[Close]

BLAST of Lsi09G006710 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.3e-39
Identity = 96/152 (63.16%), Postives = 112/152 (73.68%), Query Frame = 1


Query: 33  SLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAP 92
           +LN+ +G +KSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPDE--TVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK 152
           PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP  PKDP AP   PK K T  +GRPRGRP K
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP--PKDPNAPPKSPKAKATPATGRPRGRPKK 120

Query: 153 YPK-PAPTSAPVAGPPRGRGRPPKVKPAVAPV 184
             + PA  S       R RGRPPKVKP +  V
Sbjct: 121 VARSPAVPSPTAVSTGRPRGRPPKVKPQLTEV 148

[Close]

BLAST of Lsi09G006710 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.3e-34
Identity = 101/197 (51.27%), Postives = 122/197 (61.93%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATD+     P PP        YPEMI+ AIE L+DK+G +KSAI+K IE  YG LPPA 
Sbjct: 1   MATDEATKPSPIPP--------YPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPD-PNAPPKRGRGRPPK---PKVPLP-PGTVVSP 120
            +LLT HL  MK++G+L+F+KNNY +   P+APPKRGRGRPPK   P  P P P +  S 
Sbjct: 61  ASLLTAHLARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSST 120

Query: 121 PRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK----------YPKPAPTSAPVAG 180
            R RGRPPK K   +P+    K+ T+G  +PRGRPPK           P PAP  A    
Sbjct: 121 GRGRGRPPKAK---SPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGS 180

[Close]

BLAST of Lsi09G006710 vs. TrEMBL
Match: A0A0A0KPG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G568810 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.7e-95
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. TrEMBL
Match: M5XVE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018145mg PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 142/191 (74.35%), Postives = 156/191 (81.68%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++   NPP PPPPAPSLP Y EMIM AIE+LND NG +KSAI   IESTYGDLPPA 
Sbjct: 1   MATENS-ENPPAPPPPAPSLPQYTEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK------YPKPAPTSAPVAGPPRGRGRPP 180
           RPPKP+DPF+P ++P  K+ SG+GRPRGRPPK       P  AP  AP  G PRGRGRPP
Sbjct: 121 RPPKPRDPFSPQAEP--KSPSGTGRPRGRPPKKAKTASAPPQAPAPAPATGAPRGRGRPP 180

Query: 181 KVKPAVAPVGC 186
           KVKPAVAPVGC
Sbjct: 181 KVKPAVAPVGC 188

[Close]

BLAST of Lsi09G006710 vs. TrEMBL
Match: A5AYX2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005586 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-63
Identity = 136/187 (72.73%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  NNPPQPP    S+P Y EMIM AIE+LNDK+G +KS+I+K IESTYGDLP A 
Sbjct: 1   MATEEP-NNPPQPPS---SIPQYSEMIMAAIEALNDKSGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLL HHL+ MKQ+G L+ VKNNYMKPDPNAPP+RGRGRPPKPKVPLPPGTV++PPRPRG
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLAPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTS--APVAGPPRGRGRPPKVKP 180
           RPPKP+DPFAP+S P KK +SGSG+PRGRPPK PK   +S  AP  G PR RGRPPKVKP
Sbjct: 121 RPPKPRDPFAPVS-PPKKASSGSGKPRGRPPKKPKVGTSSAPAPATGAPRPRGRPPKVKP 180

Query: 181 AVAPVGC 186
           AV PVGC
Sbjct: 181 AVVPVGC 182

[Close]

BLAST of Lsi09G006710 vs. TrEMBL
Match: D7T8P4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05360 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-63
Identity = 136/187 (72.73%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  NNPPQPP    S+P Y EMIM AIE+LNDK G +KS+I+K IESTYGDLP A 
Sbjct: 1   MATEEP-NNPPQPPS---SIPQYSEMIMAAIEALNDKGGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLL HHL+ MKQ+G L+ VKNNYMKPDPNAPP+RGRGRPPKPKVPLPPGTV++PPRPRG
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLAPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTS--APVAGPPRGRGRPPKVKP 180
           RPPKP+DPFAP+S P KK +SGSG+PRGRPPK PK   +S  AP  G PR RGRPPKVKP
Sbjct: 121 RPPKPRDPFAPVS-PPKKASSGSGKPRGRPPKKPKVGTSSAPAPATGAPRPRGRPPKVKP 180

Query: 181 AVAPVGC 186
           AV PVGC
Sbjct: 181 AVVPVGC 182

[Close]

BLAST of Lsi09G006710 vs. TrEMBL
Match: A0A067KPL1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04730 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.6e-63
Identity = 132/187 (70.59%), Postives = 152/187 (81.28%), Query Frame = 1


Query: 4   DDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTL 63
           + Q   P QP   + ++P YPE+IM AIE+LNDKNG +KSAI+KQIE+ Y DLP A TTL
Sbjct: 24  EQQQTQPQQPQQQSSTIPQYPELIMQAIEALNDKNGSNKSAISKQIETIYPDLPAAHTTL 83

Query: 64  LTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPP 123
           L+HHL+ MKQ+GQL+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTV+SPPRPRGRPP
Sbjct: 84  LSHHLNKMKQSGQLVMVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVISPPRPRGRPP 143

Query: 124 KPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVA-------GPPRGRGRPPKV 183
           KP+DPFAP++ PKKK+ +GSGRPRGRPPK  KPA   APV        G  RGRGRPPKV
Sbjct: 144 KPRDPFAPVASPKKKSPTGSGRPRGRPPKKAKPAGAPAPVTVSPSQAKGVKRGRGRPPKV 203

[Close]

BLAST of Lsi09G006710 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 184.1 bits (466), Expect = 7.8e-47
Identity = 116/190 (61.05%), Postives = 133/190 (70.00%), Query Frame = 1


Query: 16  PAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AIESLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKV 186
           PKDP  P   P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKV
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKV 198

[Close]

BLAST of Lsi09G006710 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 63/179 (35.20%), Postives = 79/179 (44.13%), Query Frame = 1


Query: 2   ATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFT 61
           A   Q    P PP P+ S P Y +MI TAI +LN+ +G SK AI++ IE  Y  +P A  
Sbjct: 57  APPQQPQTSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHG 116

Query: 62  TLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGR 121
            LLTHHL  +K +G L+ VK +Y         K     PP P   + P   + PPR    
Sbjct: 117 ALLTHHLKTLKTSGILVMVKKSY---------KLASTPPPPPPTSVAPS--LEPPR---- 176

Query: 122 PPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 181
                D     +QP                  P P   S+      RGRGRPPK KP V
Sbjct: 177 ----SDFIVNENQP-----------------LPDPVLASSTPQTIKRGRGRPPKAKPDV 199

[Close]

BLAST of Lsi09G006710 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 60.8 bits (146), Expect = 9.9e-10
Identity = 72/203 (35.47%), Postives = 93/203 (45.81%), Query Frame = 1


Query: 11  PQPP----PPAPSLPH--YPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLL 70
           PQP      P  S+PH  Y EMI  AI +LN+ +G SK AI++ IE  Y  L  A   LL
Sbjct: 50  PQPQMFQLSPHVSMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALL 109

Query: 71  THHLDVMKQTGQLLFVKNNYMKPDPNAPP--------KRGRGRP-PKPKV-------PLP 130
           THHL  +K +G L  VK +Y     + PP           +G   P+ ++       P+ 
Sbjct: 110 THHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMA 169

Query: 131 PGTVVSP-PRPRGRPPKPKDPF--APISQ-PKKKTTSGSGRPRGRPPKYPKPAPTSAPVA 184
            G+   P  R RGRPPKPK      P+ Q P       +G+P     +   P P   PV 
Sbjct: 170 SGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVT 229

[Close]

BLAST of Lsi09G006710 vs. TAIR10
Match: AT5G08780.1 (AT5G08780.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 51.2 bits (121), Expect = 7.8e-07
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 18  PSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQL 77
           P  P Y  MI  AI  LN + G S+ AI++ I+S Y +LP A T LL+HHL  + +  ++
Sbjct: 53  PDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREI 112

Query: 78  LFVKNN 84
           L   NN
Sbjct: 113 LCDCNN 118

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: gi|659133908|ref|XP_008466945.1| (PREDICTED: HMG-Y-related protein A [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 1.9e-95
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: gi|449464798|ref|XP_004150116.1| (PREDICTED: HMG-Y-related protein A [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.5e-95
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: gi|1009154911|ref|XP_015895428.1| (PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba])

HSP 1 Score: 275.8 bits (704), Expect = 5.6e-71
Identity = 150/187 (80.21%), Postives = 161/187 (86.10%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  NNPP PPPPAPSLP YPEMIMTAIESLNDKNG +KSAI+K IESTYGDLP A 
Sbjct: 1   MATENS-NNPPPPPPPAPSLPQYPEMIMTAIESLNDKNGSNKSAISKHIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHL+ MKQ G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTV+SPPRPRG
Sbjct: 61  TTLLTHHLNRMKQNGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKT--TSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKP 180
           RPPKP DPFAP S  KKKT  +SGSGRPRGRPPK  K +  +A   G PRGRGRPPKVKP
Sbjct: 121 RPPKPIDPFAPTSIAKKKTSSSSGSGRPRGRPPKKVKTSSPAAAPDGVPRGRGRPPKVKP 180

Query: 181 AVAPVGC 186
           AVAPVGC
Sbjct: 181 AVAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: gi|596125532|ref|XP_007221891.1| (hypothetical protein PRUPE_ppa018145mg [Prunus persica])

HSP 1 Score: 264.2 bits (674), Expect = 1.7e-67
Identity = 142/191 (74.35%), Postives = 156/191 (81.68%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++   NPP PPPPAPSLP Y EMIM AIE+LND NG +KSAI   IESTYGDLPPA 
Sbjct: 1   MATENS-ENPPAPPPPAPSLPQYTEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK------YPKPAPTSAPVAGPPRGRGRPP 180
           RPPKP+DPF+P ++P  K+ SG+GRPRGRPPK       P  AP  AP  G PRGRGRPP
Sbjct: 121 RPPKPRDPFSPQAEP--KSPSGTGRPRGRPPKKAKTASAPPQAPAPAPATGAPRGRGRPP 180

Query: 181 KVKPAVAPVGC 186
           KVKPAVAPVGC
Sbjct: 181 KVKPAVAPVGC 188

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: gi|645229373|ref|XP_008221436.1| (PREDICTED: HMG-Y-related protein B-like [Prunus mume])

HSP 1 Score: 262.7 bits (670), Expect = 4.9e-67
Identity = 141/185 (76.22%), Postives = 155/185 (83.78%), Query Frame = 1


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  +NPP PPPPAPSLP YPEMIM AIE+LND NG +KSAI   IESTYGDLPPA 
Sbjct: 1   MATENS-DNPPAPPPPAPSLPQYPEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 180
           RPPKP+DPF+P  QP+ K+ SG+GRPRGRPPK  K A       G PRGRGRPPKVKPAV
Sbjct: 121 RPPKPRDPFSP--QPEPKSPSGTGRPRGRPPKKAKTA------TGAPRGRGRPPKVKPAV 176

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 176

The following BLAST results are available for this feature:

BLAST of Lsi09G006710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGYA_SOYBN	2.5e-47	62.50	HMG-Y-related protein A OS=Glycine max PE=2 SV=1	[more]
HMGYA_ARATH	1.4e-45	61.05	HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1	[more]
HMGYB_SOYBN	3.3e-39	63.16	HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1	[more]
HMGYA_MAIZE	9.3e-34	51.27	HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1	[more]

BLAST of Lsi09G006710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPG4_CUCSA	1.7e-95	97.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G568810 PE=3 SV=1	[more]
M5XVE0_PRUPE	1.2e-67	74.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018145mg PE=3 SV=1	[more]
A5AYX2_VITVI	1.3e-63	72.73	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005586 PE=3 SV=1	[more]
D7T8P4_VITVI	1.7e-63	72.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05360 PE=3 SV=...	[more]
A0A067KPL1_JATCU	8.6e-63	70.59	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04730 PE=3 SV=1	[more]

BLAST of Lsi09G006710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	7.8e-47	61.05	high mobility group A	[more]
AT1G48620.1	1.4e-11	35.20	high mobility group A5	[more]
AT3G18035.1	9.9e-10	35.47	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	7.8e-07	42.42	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of Lsi09G006710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133908\|ref\|XP_008466945.1\|	1.9e-95	98.39	PREDICTED: HMG-Y-related protein A [Cucumis melo]	[more]
gi\|449464798\|ref\|XP_004150116.1\|	2.5e-95	97.85	PREDICTED: HMG-Y-related protein A [Cucumis sativus]	[more]
gi\|1009154911\|ref\|XP_015895428.1\|	5.6e-71	80.21	PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba]	[more]
gi\|596125532\|ref\|XP_007221891.1\|	1.7e-67	74.35	hypothetical protein PRUPE_ppa018145mg [Prunus persica]	[more]
gi\|645229373\|ref\|XP_008221436.1\|	4.9e-67	76.22	PREDICTED: HMG-Y-related protein B-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0000785	chromatin
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017956	AT_hook_DNA-bd_motif
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR005818	Histone_H1/H5_H15
IPR000116	HMGA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006012	galactose metabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0019872	streptomycin biosynthetic process
biological_process	GO:0005985	sucrose metabolic process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004614	phosphoglucomutase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G006710.1	Lsi09G006710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 92..104 score: 1.3E-13coord: 118..129 score: 1.3E-13coord: 107..118 score: 1.3E-13coord: 133..152 score: 1.3
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 21..81 score: 6.9
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 17..83 score: 1.5
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 19..88 score: 22
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 17..102 score: 2.4
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 15..95 score: 5.99
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 114..125 score: 2.4E-16coord: 142..152 score: 2.4E-16coord: 94..104 score: 2.4
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 116..128 score: 23.0coord: 94..106 score: 11.0coord: 167..179 score: 1.1coord: 144..156 score:
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 9..183 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G006710	Csa5G568810	Cucumber (Chinese Long) v2	culsiB329
Lsi09G006710	CSPI05G19460	Wild cucumber (PI 183967)	cpilsiB329
Lsi09G006710	Cucsa.280260	Cucumber (Gy14) v1	cgylsiB452
Lsi09G006710	CmaCh15G009640	Cucurbita maxima (Rimu)	cmalsiB263
Lsi09G006710	CmaCh04G021170	Cucurbita maxima (Rimu)	cmalsiB626
Lsi09G006710	CmoCh04G022170	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G006710	CmoCh15G010060	Cucurbita moschata (Rifu)	cmolsiB250
Lsi09G006710	Cla003937	Watermelon (97103) v1	lsiwmB028
Lsi09G006710	ClCG01G006370	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G006710	Cla97C01G006670	Watermelon (97103) v2	lsiwmbB007
Lsi09G006710	Bhi12G000795	Wax gourd	lsiwgoB006
Lsi09G006710	Cp4.1LG01g18390	Cucurbita pepo (Zucchini)	cpelsiB315
Lsi09G006710	Cp4.1LG13g03600	Cucurbita pepo (Zucchini)	cpelsiB135
Lsi09G006710	CsGy5G018970	Cucumber (Gy14) v2	cgyblsiB301
Lsi09G006710	Carg26066	Silver-seed gourd	carlsiB388
Lsi09G006710	CsaV3_5G028310	Cucumber (Chinese Long) v3	cuclsiB352

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G006710	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G006710	Cucurbita moschata (Rifu)	cmolsiB615
Lsi09G006710	Cucurbita pepo (Zucchini)	cpelsiB311
Lsi09G006710	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G006710	Melon (DHL92) v3.6.1	lsimedB013
Lsi09G006710	Silver-seed gourd	carlsiB387
Lsi09G006710	Silver-seed gourd	carlsiB799