ClCG01G006370 (gene) Watermelon (Charleston Gray)

NameClCG01G006370
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionHigh-mobility-group family protein
LocationCG_Chr01 : 7135142 .. 7136125 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCCACCAAACCTACAGTGTTTCTCTCTCATCCTCCTCTCTCTCTCTACAATCCCATCATCTCCGCCGCCATGGCTACCGACGATCAACTCAACAACCCCCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGGTACTTCAATTTCTGTCTTCCTCTGCATTTCTTAATTTCTGTGTTTTTCTTTTTTAATTTAATTTTGAGAAATTTCTTCTACAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAACAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGCCGTCCTCCCAAGCCTAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCTCGCCCACGTGGTCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCAACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAGTGGAACAAAAACAGAGGATGAGAGAGAGAGAGAGAAATAGAGATAGAGAGAGAGAAAAAAAAGATGAAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTAATTTTTTTTTTTCTAATTTTAAAAATTTTTAATTTTACTTCTCTTTTTTTAATGTGTATTACGTGGCGGGTGATGTATGGTTGTAATTCTGGGTGGGGGTTAGGAGATTGTAATTGCATGTAAGTTATTTTACCGGCTGTTAGGGC

mRNA sequence

CTTCCCACCAAACCTACAGTGTTTCTCTCTCATCCTCCTCTCTCTCTCTACAATCCCATCATCTCCGCCGCCATGGCTACCGACGATCAACTCAACAACCCCCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAACAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGCCGTCCTCCCAAGCCTAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCTCGCCCACGTGGTCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCAACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAGTGGAACAAAAACAGAGGATGAGAGAGAGAGAGAGAAATAGAGATAGAGAGAGAGAAAAAAAAGATGAAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTAATTTTTTTTTTTCTAATTTTAAAAATTTTTAATTTTACTTCTCTTTTTTTAATGTGTATTACGTGGCGGGTGATGTATGGTTGTAATTCTGGGTGGGGGTTAGGAGATTGTAATTGCATGTAAGTTATTTTACCGGCTGTTAGGGC

Coding sequence (CDS)

ATGGCTACCGACGATCAACTCAACAACCCCCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAACAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGCCGTCCTCCCAAGCCTAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCTCGCCCACGTGGTCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCAACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGA

Protein sequence

MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC
BLAST of ClCG01G006370 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-55
Identity = 115/184 (62.50%), Postives = 131/184 (71.20%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++   N PQ      SLP YPEMI+  +E+LN+ NG +KSAI+K IE+TYG+LP A 
Sbjct: 1   MATEEV--NKPQ------SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA- 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRPPKPK PLPPGTVVSPPRPRG
Sbjct: 61  -TVLGSHLNKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVA-GPPRGRGRPPKVKPA 180
           RP  PKDP AP   PK K T GSGRPRGRP K P+    +AP A    R RGRPPKVKP 
Sbjct: 121 RP--PKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQ 172

Query: 181 VAPV 184
           +  V
Sbjct: 181 LTEV 172

BLAST of ClCG01G006370 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.6e-54
Identity = 116/190 (61.05%), Postives = 131/190 (68.95%), Query Frame = 1

Query: 16  PAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AIESLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKV 186
           PKDP  P   P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKV
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKV 198

BLAST of ClCG01G006370 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.3e-47
Identity = 96/152 (63.16%), Postives = 110/152 (72.37%), Query Frame = 1

Query: 33  SLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAP 92
           +LN+ +G +KSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPDE--TVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK 152
           PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP  PKDP AP   PK K T  +GRPRGRP K
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP--PKDPNAPPKSPKAKATPATGRPRGRPKK 120

Query: 153 YPK-PAPTSAPVAGPPRGRGRPPKVKPAVAPV 184
             + PA  S       R RGRPPKVKP +  V
Sbjct: 121 VARSPAVPSPTAVSTGRPRGRPPKVKPQLTEV 148

BLAST of ClCG01G006370 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.1e-42
Identity = 101/197 (51.27%), Postives = 120/197 (60.91%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATD+     P PP        YPEMI+ AIE L+DK+G +KSAI+K IE  YG LPPA 
Sbjct: 1   MATDEATKPSPIPP--------YPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPD-PNAPPKRGRGRPPK---PKVPLP-PGTVVSP 120
            +LLT HL  MK++G+L+F+KNNY +   P+APPKRGRGRPPK   P  P P P +  S 
Sbjct: 61  ASLLTAHLARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSST 120

Query: 121 PRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK----------YPKPAPTSAPVAG 180
            R RGRPPK K   +P+    K+ T+G  +PRGRPPK           P PAP  A    
Sbjct: 121 GRGRGRPPKAK---SPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGS 180

BLAST of ClCG01G006370 vs. Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-13
Identity = 59/179 (32.96%), Postives = 83/179 (46.37%), Query Frame = 1

Query: 19  SLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLL 78
           S P + EMI  AI +L ++ G S+ AI K +E  +  LP  F  LL  HL  +  +G+L+
Sbjct: 50  SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLV 109

Query: 79  FVKNNYMKPDPNAPPKRGRGRP---PKPKVPLPPGTVVSPPRPRGR---------PPKPK 138
            VKN++  P   A P     +    PKPKV   P T     +P+ +           K  
Sbjct: 110 KVKNSFKLPSARAAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATTKTV 169

Query: 139 DPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRP-PKVKPAVAPVG 185
               P ++PK KT   +G+P+    K  K A T+A VA P + +  P  KVK   +P G
Sbjct: 170 AKKIPAAKPKAKT---AGKPKTVAAKPAKVAKTAA-VASPGKKKAVPVKKVKTVKSPAG 224

BLAST of ClCG01G006370 vs. TrEMBL
Match: A0A0A0KPG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G568810 PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 7.0e-105
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

BLAST of ClCG01G006370 vs. TrEMBL
Match: M5XVE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018145mg PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.2e-77
Identity = 142/191 (74.35%), Postives = 156/191 (81.68%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++   NPP PPPPAPSLP Y EMIM AIE+LND NG +KSAI   IESTYGDLPPA 
Sbjct: 1   MATENS-ENPPAPPPPAPSLPQYTEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK------YPKPAPTSAPVAGPPRGRGRPP 180
           RPPKP+DPF+P ++P  K+ SG+GRPRGRPPK       P  AP  AP  G PRGRGRPP
Sbjct: 121 RPPKPRDPFSPQAEP--KSPSGTGRPRGRPPKKAKTASAPPQAPAPAPATGAPRGRGRPP 180

Query: 181 KVKPAVAPVGC 186
           KVKPAVAPVGC
Sbjct: 181 KVKPAVAPVGC 188

BLAST of ClCG01G006370 vs. TrEMBL
Match: A5AYX2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005586 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.2e-72
Identity = 136/187 (72.73%), Postives = 156/187 (83.42%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  NNPPQPP    S+P Y EMIM AIE+LNDK+G +KS+I+K IESTYGDLP A 
Sbjct: 1   MATEEP-NNPPQPPS---SIPQYSEMIMAAIEALNDKSGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLL HHL+ MKQ+G L+ VKNNYMKPDPNAPP+RGRGRPPKPKVPLPPGTV++PPRPRG
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLAPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTS--APVAGPPRGRGRPPKVKP 180
           RPPKP+DPFAP+S P KK +SGSG+PRGRPPK PK   +S  AP  G PR RGRPPKVKP
Sbjct: 121 RPPKPRDPFAPVS-PPKKASSGSGKPRGRPPKKPKVGTSSAPAPATGAPRPRGRPPKVKP 180

Query: 181 AVAPVGC 186
           AV PVGC
Sbjct: 181 AVVPVGC 182

BLAST of ClCG01G006370 vs. TrEMBL
Match: D7T8P4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05360 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.6e-72
Identity = 136/187 (72.73%), Postives = 155/187 (82.89%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  NNPPQPP    S+P Y EMIM AIE+LNDK G +KS+I+K IESTYGDLP A 
Sbjct: 1   MATEEP-NNPPQPPS---SIPQYSEMIMAAIEALNDKGGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLL HHL+ MKQ+G L+ VKNNYMKPDPNAPP+RGRGRPPKPKVPLPPGTV++PPRPRG
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLAPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTS--APVAGPPRGRGRPPKVKP 180
           RPPKP+DPFAP+S P KK +SGSG+PRGRPPK PK   +S  AP  G PR RGRPPKVKP
Sbjct: 121 RPPKPRDPFAPVS-PPKKASSGSGKPRGRPPKKPKVGTSSAPAPATGAPRPRGRPPKVKP 180

Query: 181 AVAPVGC 186
           AV PVGC
Sbjct: 181 AVVPVGC 182

BLAST of ClCG01G006370 vs. TrEMBL
Match: A0A067KPL1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04730 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.7e-72
Identity = 132/187 (70.59%), Postives = 152/187 (81.28%), Query Frame = 1

Query: 4   DDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTL 63
           + Q   P QP   + ++P YPE+IM AIE+LNDKNG +KSAI+KQIE+ Y DLP A TTL
Sbjct: 24  EQQQTQPQQPQQQSSTIPQYPELIMQAIEALNDKNGSNKSAISKQIETIYPDLPAAHTTL 83

Query: 64  LTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPP 123
           L+HHL+ MKQ+GQL+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTV+SPPRPRGRPP
Sbjct: 84  LSHHLNKMKQSGQLVMVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVISPPRPRGRPP 143

Query: 124 KPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVA-------GPPRGRGRPPKV 183
           KP+DPFAP++ PKKK+ +GSGRPRGRPPK  KPA   APV        G  RGRGRPPKV
Sbjct: 144 KPRDPFAPVASPKKKSPTGSGRPRGRPPKKAKPAGAPAPVTVSPSQAKGVKRGRGRPPKV 203

BLAST of ClCG01G006370 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55
Identity = 116/190 (61.05%), Postives = 131/190 (68.95%), Query Frame = 1

Query: 16  PAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AIESLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKV 186
           PKDP  P   P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKV
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKV 198

BLAST of ClCG01G006370 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 91.7 bits (226), Expect = 5.2e-19
Identity = 72/203 (35.47%), Postives = 91/203 (44.83%), Query Frame = 1

Query: 11  PQPP----PPAPSLPH--YPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLL 70
           PQP      P  S+PH  Y EMI  AI +LN+ +G SK AI++ IE  Y  L  A   LL
Sbjct: 50  PQPQMFQLSPHVSMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALL 109

Query: 71  THHLDVMKQTGQLLFVKNNYMKPDPNAPP--------KRGRGRP-PKPKV-------PLP 130
           THHL  +K +G L  VK +Y     + PP           +G   P+ ++       P+ 
Sbjct: 110 THHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMA 169

Query: 131 PGTVVSP-PRPRGRPPKPKDPF--APISQ-PKKKTTSGSGRPRGRPPKYPKPAPTSAPVA 184
            G+   P  R RGRPPKPK      P+ Q P       +G+P     +   P P   PV 
Sbjct: 170 SGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVT 229

BLAST of ClCG01G006370 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 87.8 bits (216), Expect = 7.6e-18
Identity = 63/179 (35.20%), Postives = 77/179 (43.02%), Query Frame = 1

Query: 2   ATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFT 61
           A   Q    P PP P+ S P Y +MI TAI +LN+ +G SK AI++ IE  Y  +P A  
Sbjct: 57  APPQQPQTSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHG 116

Query: 62  TLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGR 121
            LLTHHL  +K +G L+ VK +Y         K     PP P   + P   + PPR    
Sbjct: 117 ALLTHHLKTLKTSGILVMVKKSY---------KLASTPPPPPPTSVAPS--LEPPR---- 176

Query: 122 PPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 181
                D     +QP                  P P   S+      RGRGRPPK KP V
Sbjct: 177 ----SDFIVNENQP-----------------LPDPVLASSTPQTIKRGRGRPPKAKPDV 199

BLAST of ClCG01G006370 vs. TAIR10
Match: AT2G30620.1 (AT2G30620.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-10
Identity = 52/175 (29.71%), Postives = 71/175 (40.57%), Query Frame = 1

Query: 11  PQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDV 70
           P       S P Y EMI  AI +L ++ G S+ AI K IE  +  LPP F  LL  +L  
Sbjct: 53  PTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKR 112

Query: 71  MKQTGQLLFVKNNY--------MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRP 130
           +  + +L+ VK ++          P P AP K+      KPK  +     V+P + +   
Sbjct: 113 LVASEKLVKVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKV--AAAVAPAKAKAAA 172

Query: 131 PKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTS--APVAGPPRGRGRPPK 176
              K P A +    K T     +     PK    A  S    VA  P+ + RP K
Sbjct: 173 KGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAK 225

BLAST of ClCG01G006370 vs. TAIR10
Match: AT1G06760.1 (AT1G06760.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 49/163 (30.06%), Postives = 69/163 (42.33%), Query Frame = 1

Query: 19  SLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLL 78
           S P Y EMI  AI +L ++ G S+ AI K IE    +LPP F  LL  +L  +  +G+L+
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLV 120

Query: 79  FVKNNYMKPDPNA---PPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFA--PIS 138
            VK ++  P  +A    PK    +    K       V    R      K K   A  P +
Sbjct: 121 KVKASFKLPSASAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKT 180

Query: 139 QPKKKTTSGSGRPRGRP-PKYPKPAPTSAPVAGPPRGRGRPPK 176
              KK T+   + + +P P+    A     V   P+ + RP K
Sbjct: 181 AAAKKVTA---KAKAKPVPRATAAATKRKAVDAKPKAKARPAK 220

BLAST of ClCG01G006370 vs. NCBI nr
Match: gi|659133908|ref|XP_008466945.1| (PREDICTED: HMG-Y-related protein A [Cucumis melo])

HSP 1 Score: 388.3 bits (996), Expect = 7.7e-105
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

BLAST of ClCG01G006370 vs. NCBI nr
Match: gi|449464798|ref|XP_004150116.1| (PREDICTED: HMG-Y-related protein A [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 1.0e-104
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

BLAST of ClCG01G006370 vs. NCBI nr
Match: gi|1009154911|ref|XP_015895428.1| (PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba])

HSP 1 Score: 307.4 bits (786), Expect = 1.7e-80
Identity = 150/187 (80.21%), Postives = 161/187 (86.10%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  NNPP PPPPAPSLP YPEMIMTAIESLNDKNG +KSAI+K IESTYGDLP A 
Sbjct: 1   MATENS-NNPPPPPPPAPSLPQYPEMIMTAIESLNDKNGSNKSAISKHIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHL+ MKQ G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTV+SPPRPRG
Sbjct: 61  TTLLTHHLNRMKQNGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKT--TSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKP 180
           RPPKP DPFAP S  KKKT  +SGSGRPRGRPPK  K +  +A   G PRGRGRPPKVKP
Sbjct: 121 RPPKPIDPFAPTSIAKKKTSSSSGSGRPRGRPPKKVKTSSPAAAPDGVPRGRGRPPKVKP 180

Query: 181 AVAPVGC 186
           AVAPVGC
Sbjct: 181 AVAPVGC 186

BLAST of ClCG01G006370 vs. NCBI nr
Match: gi|596125532|ref|XP_007221891.1| (hypothetical protein PRUPE_ppa018145mg [Prunus persica])

HSP 1 Score: 295.0 bits (754), Expect = 8.8e-77
Identity = 142/191 (74.35%), Postives = 156/191 (81.68%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++   NPP PPPPAPSLP Y EMIM AIE+LND NG +KSAI   IESTYGDLPPA 
Sbjct: 1   MATENS-ENPPAPPPPAPSLPQYTEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK------YPKPAPTSAPVAGPPRGRGRPP 180
           RPPKP+DPF+P ++P  K+ SG+GRPRGRPPK       P  AP  AP  G PRGRGRPP
Sbjct: 121 RPPKPRDPFSPQAEP--KSPSGTGRPRGRPPKKAKTASAPPQAPAPAPATGAPRGRGRPP 180

Query: 181 KVKPAVAPVGC 186
           KVKPAVAPVGC
Sbjct: 181 KVKPAVAPVGC 188

BLAST of ClCG01G006370 vs. NCBI nr
Match: gi|645229373|ref|XP_008221436.1| (PREDICTED: HMG-Y-related protein B-like [Prunus mume])

HSP 1 Score: 293.1 bits (749), Expect = 3.4e-76
Identity = 141/185 (76.22%), Postives = 155/185 (83.78%), Query Frame = 1

Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  +NPP PPPPAPSLP YPEMIM AIE+LND NG +KSAI   IESTYGDLPPA 
Sbjct: 1   MATENS-DNPPAPPPPAPSLPQYPEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 180
           RPPKP+DPF+P  QP+ K+ SG+GRPRGRPPK  K A       G PRGRGRPPKVKPAV
Sbjct: 121 RPPKPRDPFSP--QPEPKSPSGTGRPRGRPPKKAKTA------TGAPRGRGRPPKVKPAV 176

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HMGYA_SOYBN1.9e-5562.50HMG-Y-related protein A OS=Glycine max PE=2 SV=1[more]
HMGYA_ARATH3.6e-5461.05HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1[more]
HMGYB_SOYBN7.3e-4763.16HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1[more]
HMGYA_MAIZE4.1e-4251.27HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1[more]
H1_EUPES5.3e-1332.96Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KPG4_CUCSA7.0e-10597.85Uncharacterized protein OS=Cucumis sativus GN=Csa_5G568810 PE=3 SV=1[more]
M5XVE0_PRUPE6.2e-7774.35Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018145mg PE=3 SV=1[more]
A5AYX2_VITVI1.2e-7272.73Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005586 PE=3 SV=1[more]
D7T8P4_VITVI1.6e-7272.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05360 PE=3 SV=... [more]
A0A067KPL1_JATCU2.7e-7270.59Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04730 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G14900.12.0e-5561.05 high mobility group A[more]
AT3G18035.15.2e-1935.47 winged-helix DNA-binding transcription factor family protein[more]
AT1G48620.17.6e-1835.20 high mobility group A5[more]
AT2G30620.12.6e-1029.71 winged-helix DNA-binding transcription factor family protein[more]
AT1G06760.12.4e-0830.06 winged-helix DNA-binding transcription factor family protein[more]
Match NameE-valueIdentityDescription
gi|659133908|ref|XP_008466945.1|7.7e-10598.39PREDICTED: HMG-Y-related protein A [Cucumis melo][more]
gi|449464798|ref|XP_004150116.1|1.0e-10497.85PREDICTED: HMG-Y-related protein A [Cucumis sativus][more]
gi|1009154911|ref|XP_015895428.1|1.7e-8080.21PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba][more]
gi|596125532|ref|XP_007221891.1|8.8e-7774.35hypothetical protein PRUPE_ppa018145mg [Prunus persica][more]
gi|645229373|ref|XP_008221436.1|3.4e-7676.22PREDICTED: HMG-Y-related protein B-like [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000116HMGA
IPR005818Histone_H1/H5_H15
IPR011991Winged helix-turn-helix DNA-binding domain
IPR017956AT_hook_DNA-bd_motif
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000785chromatin
GO:0000786nucleosome
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006334nucleosome assembly
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006012 galactose metabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0005982 starch metabolic process
biological_process GO:0019872 streptomycin biosynthetic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000785 chromatin
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003677 DNA binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004614 phosphoglucomutase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G006370.1ClCG01G006370.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000116High mobility group protein HMGAPRINTSPR00930HIGHMOBLTYIYcoord: 92..104
score: 1.3E-13coord: 118..129
score: 1.3E-13coord: 107..118
score: 1.3E-13coord: 133..152
score: 1.3
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 21..81
score: 6.9
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 17..83
score: 1.5
IPR005818Linker histone H1/H5, domain H15PROFILEPS51504H15coord: 19..88
score: 22
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 17..102
score: 2.4
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 15..95
score: 5.99
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 114..125
score: 2.4E-16coord: 142..152
score: 2.4E-16coord: 94..104
score: 2.4
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 116..128
score: 23.0coord: 94..106
score: 11.0coord: 167..179
score: 1.1coord: 144..156
score:
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 9..183
score: 1.2

The following gene(s) are paralogous to this gene:

None