CsaV3_5G028310 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G028310
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	HMG-Y-related protein A
Location	chr5 : 23478238 .. 23480492 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGTAATCGAAATGAAGGAAAAAGAAAAAGAAAAAGAAAAAGAAAAGATCATGGTAGGAAGACAGCAACAGCACGGAATACCGAGAGAGTGCTGCTGCTTATCTCCAACTCCCAAACTCCAAACTCCAAACTCCAAACTAAACATTCTATAAATTTAAAAACAAAACAAAAGGGAAAAGGGCAAAAAAGGAGAAAAGAAAAGAAGAAGAAAATAAGAAAGAAGGGAGGGCGTGGAAAGTAGGTCCCACTATCCACGTCAACGATCCGTGTTGCCAAACACAATACTCAAATTCCAGCCCTGGGATCCTCACCCTTAGCTCTCTATCCCCAACCGTTGGATCTCCCCTGCCCTTCCTCCCGATCCCTTCCTCTCCCTATTTCTCCTTTTTAAATCCTTCCCTTTCCCCTTCTTCAATCGTCTTCTTCCCACCAAACCTACAGTGCTTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTAAAATCACATCATCTACGCCATCTCCTCTGCCACCATGGCTACCGACGACCAACTCAACAACCCGCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGGTACTTCAATTTCTCTTCTTTCTCTCTCTGCCATTTCTTTAATTTTCCTTTTAACTTTAATTTCCGTCTAATTTCTTTCCACAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGTCGTCCACCCAAGCCCAAAGTCCCTCTTCCACCAGGCACCGTCGTTTCTCCCCCACGCCCACGTGGCCGACCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACAACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCCAAACCGGCACCCACCTCTGCTCCACCCGTCGCTGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAATGGAACAAAACTAAAAACAGAGGATGAGAGAGAGAGAGAGAAAAATAGAAATTAGAGAGAGAAAGAAGATGATAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTCATTTTTTTTCTTCCTTCTTTCTTCTAATTTTAAAAATTTTTAATCTTACTTCTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTAATTAATGTGTATTACGTGGCGGGTTATGTAGGGCTGTAATTCTGGGTGGGGGTTAGGAGATTGTAATTGCATGTAATTTATTTTACCGGTTGTTAGGGTTTTTTTTTTCTTCCCTTCCCTTATTAAACTCTCCATTAAAAAAAATATATTTAAGTTTTAATTTATGCGGCCACTTTAAGGGACTTTAAATCTTTTAATTATTTTATTTTATTTTTTGCTTTTTTCTACTTTAATATATCAAATTGCATTACCTTCTCCTGCAATGGGTAGAATTTGCTTTAATTATTTTAATTCTAAATATGGAACATGATTCCTTTATATTAGGCTTCCAATTTATAATCAATTTCAGAAAAAAAAAATATTAGTTTTCTTCTTTTCTTTTTAATATCCATTATAATGATGAGCATAGCCTTTGGTTGATGCATTTTGAGTTTTATAGGGTTTACTGTTTTTGGTTTTTTATTTACGCCTTTTTATCAAACAATTTACGTATATTTCTTTACCATTTTTGTTTCGGTTGTTATCTTTTTATTATTATTTATGTTTGTCATGCCACACTTGGGATTGGGTTTCAAAATATGTTTTCAATTTTTGGACCCATTTCTTTAGTTTAAAATATCAATGATATTTCATTTTTTACCATTATATTTTCTCCAATTTTTAGGTTTTTGTAATATACTTTTATACGCTGTTTCATTGAAAGAGAAATACTTTTACCCATGGTTGAAGTTGAAAAAGGGTGAGTATGAATTGTTGTTTTAAAGTTGTTTCTAGCCTTGATTTGTTTGGTTACATGCATAATTTAAATTAAGTTTATTGTCTGTTTATTTTTCAATTTTTACTCTGATTTTACACAAATTTTTACAAATTAATTTTAAC

mRNA sequence

ATGGCTACCGACGACCAACTCAACAACCCGCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGTCGTCCACCCAAGCCCAAAGTCCCTCTTCCACCAGGCACCGTCGTTTCTCCCCCACGCCCACGTGGCCGACCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACAACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCCAAACCGGCACCCACCTCTGCTCCACCCGTCGCTGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGA

Coding sequence (CDS)

ATGGCTACCGACGACCAACTCAACAACCCGCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGTCGTCCACCCAAGCCCAAAGTCCCTCTTCCACCAGGCACCGTCGTTTCTCCCCCACGCCCACGTGGCCGACCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACAACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCCAAACCGGCACCCACCTCTGCTCCACCCGTCGCTGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGA

Protein sequence

MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPVGC

Homology

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BLAST of CsaV3_5G028310 vs. NCBI nr
Match: XP_004150116.1 (PREDICTED: HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_5G568810 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 8.1e-50
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of CsaV3_5G028310 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 185/186 (99.46%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of CsaV3_5G028310 vs. NCBI nr
Match: XP_022953026.1 (HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related protein B-like [Cucurbita maxima])

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 173/186 (93.01%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT DQLNNPPXXXXXXXXXXXXX  IM+AID+LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKK +S   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKPSS-GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 185

[Close]

BLAST of CsaV3_5G028310 vs. NCBI nr
Match: XP_022938491.1 (HMG-Y-related protein A [Cucurbita moschata])

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 169/186 (90.86%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           M T+DQLNNPPXXXXXXXXXXXXX MIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MGTEDQLNNPPXXXXXXXXXXXXXXMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLL HHLDVMKQTG+LLF+KNNYMKPDPNAPPKRGRGRPPKPKVPL XXXXXXXXXXXX
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKKT++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTSTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKPA 180

Query: 181 VAPVGC 187
           VAP+GC
Sbjct: 181 VAPIGC 186

[Close]

BLAST of CsaV3_5G028310 vs. NCBI nr
Match: XP_023550058.1 (HMG-Y-related protein A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 169/186 (90.86%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           M T+DQLNNPPXXXXXXXXXXXXX MIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MVTEDQLNNPPXXXXXXXXXXXXXXMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLL HHLDVMKQTG+LLF+KNNYMKPDPNAPPKRGRGRPPKPKVPL XXXXXXXXXXXX
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKKT++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTSTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKPA 180

Query: 181 VAPVGC 187
           VAP+GC
Sbjct: 181 VAPIGC 186

[Close]

BLAST of CsaV3_5G028310 vs. TAIR10
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-20
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 25 EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84
          +MIM AI+SLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TGQL+ +KNNY
Sbjct: 28 QMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNY 87

Query: 85 MKPDPNAP 93
          MKPDP+AP
Sbjct: 88 MKPDPDAP 95

[Close]

BLAST of CsaV3_5G028310 vs. TAIR10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-09
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84
           EMI AAI +LN+ +G SK AI++ IE  Y  L  A   LLTHHL  +K +G L  +K +Y
Sbjct: 70  EMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMVKKSY 129

Query: 85  MKPDPNAPP 94
                + PP
Sbjct: 130 KIAGSSTPP 138

[Close]

BLAST of CsaV3_5G028310 vs. TAIR10
Match: AT1G48620.1 (high mobility group A5)

HSP 1 Score: 57.8 bits (138), Expect = 8.5e-09
Identity = 41/117 (35.04%), Postives = 55/117 (47.01%), Query Frame = 0


Query: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84
           +MI  AI +LN+ +G SK AI++ IE  Y  +P A   LLTHHL  +K +G L+ +K +Y
Sbjct: 80  DMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKKSY 139

Query: 85  MK-------------------------------PDP---NAPP---KRGRGRPPKPK 105
                                            PDP   ++ P   KRGRGRPPK K
Sbjct: 140 KXXXXXXXXXXXXVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAK 196

[Close]

BLAST of CsaV3_5G028310 vs. TAIR10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-05
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 26  MIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNN 84
           MI  AI  LN + G S+ AI++ I+S Y +LP A T LL+HHL  + +  ++L   NN
Sbjct: 61  MIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNN 118

[Close]

BLAST of CsaV3_5G028310 vs. Swiss-Prot
Match: sp|Q00423|HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-23
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84
           EMI+  +++LN+ NG +KSAI+K IE+TYG+LP A  T+L  HL+ MK +G+L F +NNY
Sbjct: 17  EMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA--TVLGSHLNKMKDSGELSFKQNNY 76

Query: 85  MKPDPNAPPKRGRGRPPKPKVPLP 109
           MK DPNAPPKRGRGRPPKPK PLP
Sbjct: 77  MKADPNAPPKRGRGRPPKPKTPLP 98

[Close]

BLAST of CsaV3_5G028310 vs. Swiss-Prot
Match: sp|Q10370|HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.2e-21
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 33  SLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAP 92
           +LN+ +G +KSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLP 109
           PKRGRGRPPKPKVPLP
Sbjct: 61  PKRGRGRPPKPKVPLP 74

[Close]

BLAST of CsaV3_5G028310 vs. Swiss-Prot
Match: sp|Q43386|HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-19
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 25 EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84
          +MIM AI+SLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TGQL+ +KNNY
Sbjct: 28 QMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNY 87

Query: 85 MKPDPNAP 93
          MKPDP+AP
Sbjct: 88 MKPDPDAP 95

[Close]

BLAST of CsaV3_5G028310 vs. Swiss-Prot
Match: sp|Q9FYS5|HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-17
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 25 EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84
          EMI+AAI+ L+DK+G +KSAI+K IE  YG LPPA  +LLT HL  MK++G+L+F+KNNY
Sbjct: 17 EMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKESGELVFLKNNY 76

Query: 85 MKPD-PNAPPKRG 97
           +   P+APPKRG
Sbjct: 77 FRAGAPDAPPKRG 89

[Close]

BLAST of CsaV3_5G028310 vs. TrEMBL
Match: tr|A0A0A0KPG4|A0A0A0KPG4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.4e-50
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of CsaV3_5G028310 vs. TrEMBL
Match: tr|A0A1S3CSD8|A0A1S3CSD8_CUCME (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.0e-50
Identity = 185/186 (99.46%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of CsaV3_5G028310 vs. TrEMBL
Match: tr|B9SP65|B9SP65_RICCO (Histone H1, putative OS=Ricinus communis OX=3988 GN=RCOM_0628910 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.6e-31
Identity = 67/84 (79.76%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84
           EMI+AAI+SLNDKNG +KSAI+KQ+E+TY DLPPA TTLL+HHL+ MKQ+GQL+ +KNNY
Sbjct: 33  EMILAAIESLNDKNGSNKSAISKQMETTYPDLPPAHTTLLSHHLNKMKQSGQLVLVKNNY 92

Query: 85  MKPDPNAPPKRGRGRPPKPKVPLP 109
           MKPDPNAPPKRGRGRPPKPK PLP
Sbjct: 93  MKPDPNAPPKRGRGRPPKPKAPLP 116

[Close]

BLAST of CsaV3_5G028310 vs. TrEMBL
Match: tr|A5AYX2|A5AYX2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005586 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.3e-31
Identity = 137/186 (73.66%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  NNPP             EMIMAAI++LNDK+G +KS+I+K IESTYGDLP A 
Sbjct: 1   MATEEP-NNPP---QPPSSIPQYSEMIMAAIEALNDKSGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           +TLL HHL+ MKQ+G L+ +KNNYMKPDPNAPP+RGRGRPPKPKVPLP   XXXXXXXXX
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXX S PKK ++   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXXSPPKKASSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 187
           V PVGC
Sbjct: 181 VVPVGC 182

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BLAST of CsaV3_5G028310 vs. TrEMBL
Match: tr|D7T8P4|D7T8P4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g05360 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.5e-31
Identity = 137/186 (73.66%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++  NNPP             EMIMAAI++LNDK G +KS+I+K IESTYGDLP A 
Sbjct: 1   MATEEP-NNPP---QPPSSIPQYSEMIMAAIEALNDKGGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           +TLL HHL+ MKQ+G L+ +KNNYMKPDPNAPP+RGRGRPPKPKVPLP   XXXXXXXXX
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXX S PKK ++   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXXSPPKKASSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 187
           V PVGC
Sbjct: 181 VVPVGC 182

The following BLAST results are available for this feature:

BLAST of CsaV3_5G028310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150116.1	8.1e-50	100.00	PREDICTED: HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical pr...	[more]
XP_008466945.1	1.1e-49	99.46	PREDICTED: HMG-Y-related protein A [Cucumis melo]	[more]
XP_022953026.1	1.5e-43	93.01	HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related ...	[more]
XP_022938491.1	1.5e-43	90.86	HMG-Y-related protein A [Cucurbita moschata]	[more]
XP_023550058.1	1.5e-43	90.86	HMG-Y-related protein A [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_5G028310 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	2.8e-20	64.71	high mobility group A	[more]
AT3G18035.1	3.8e-09	44.93	winged-helix DNA-binding transcription factor family protein	[more]
AT1G48620.1	8.5e-09	35.04	high mobility group A5	[more]
AT5G08780.1	3.3e-05	43.10	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of CsaV3_5G028310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q00423\|HMGYA_SOYBN	2.6e-23	64.29	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q10370\|HMGYB_SOYBN	9.2e-21	65.79	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q43386\|HMGYA_ARATH	5.1e-19	64.71	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
sp\|Q9FYS5\|HMGYA_MAIZE	3.6e-17	60.27	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of CsaV3_5G028310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPG4\|A0A0A0KPG4_CUCSA	5.4e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1	[more]
tr\|A0A1S3CSD8\|A0A1S3CSD8_CUCME	7.0e-50	99.46	HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1	[more]
tr\|B9SP65\|B9SP65_RICCO	5.6e-31	79.76	Histone H1, putative OS=Ricinus communis OX=3988 GN=RCOM_0628910 PE=4 SV=1	[more]
tr\|A5AYX2\|A5AYX2_VITVI	7.3e-31	73.66	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005586 PE=4 SV=1	[more]
tr\|D7T8P4\|D7T8P4_VITVI	9.5e-31	73.66	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g05360 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus
GO:0000785	chromatin

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR031059	HMGA_plant
IPR036388	WH-like_DNA-bd_sf
IPR005818	Histone_H1/H5_H15
IPR017956	AT_hook_DNA-bd_motif
IPR000116	HMGA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G028310.1	CsaV3_5G028310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 92..104 score: 65.93 coord: 107..118 score: 41.67 coord: 133..152 score: 49.29 coord: 118..129 score: 50.0
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 94..104 score: 77.27 coord: 142..152 score: 69.32 coord: 114..125 score: 65.97
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 168..180 e-value: 1.1 score: 15.1 coord: 116..128 e-value: 23.0 score: 7.6 coord: 144..156 e-value: 2.2 score: 13.3 coord: 94..106 e-value: 11.0 score: 9.3
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 17..83 e-value: 8.9E-20 score: 81.7
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 21..81 e-value: 1.4E-9 score: 38.1
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 19..88 score: 21.786
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 16..94 e-value: 4.2E-10 score: 41.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..186
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 17..184
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF49	SUBFAMILY NOT NAMED	coord: 17..184
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 15..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G028310	CSPI05G19460	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G028310	Cucsa.280260	Cucumber (Gy14) v1	cgycucB428
CsaV3_5G028310	CmaCh15G009640	Cucurbita maxima (Rimu)	cmacucB0355
CsaV3_5G028310	CmoCh15G010060	Cucurbita moschata (Rifu)	cmocucB0350
CsaV3_5G028310	CmoCh04G022170	Cucurbita moschata (Rifu)	cmocucB0855
CsaV3_5G028310	Cp4.1LG01g18390	Cucurbita pepo (Zucchini)	cpecucB0526
CsaV3_5G028310	Cp4.1LG13g03600	Cucurbita pepo (Zucchini)	cpecucB0212
CsaV3_5G028310	CsGy5G018970	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G028310	Carg26066	Silver-seed gourd	carcucB0460
CsaV3_5G028310	Cla003937	Watermelon (97103) v1	cucwmB441
CsaV3_5G028310	ClCG01G006370	Watermelon (Charleston Gray)	cucwcgB394
CsaV3_5G028310	Lsi09G006710	Bottle gourd (USVL1VR-Ls)	cuclsiB352
CsaV3_5G028310	Cla97C01G006670	Watermelon (97103) v2	cucwmbB359
CsaV3_5G028310	Bhi12G000795	Wax gourd	cucwgoB461

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G028310	Silver-seed gourd	carcucB0461
CsaV3_5G028310	Cucurbita maxima (Rimu)	cmacucB0869
CsaV3_5G028310	Cucurbita maxima (Rimu)	cmacucB0888
CsaV3_5G028310	Cucurbita moschata (Rifu)	cmocucB0878
CsaV3_5G028310	Cucurbita pepo (Zucchini)	cpecucB0547
CsaV3_5G028310	Wild cucumber (PI 183967)	cpicucB294
CsaV3_5G028310	Melon (DHL92) v3.5.1	cucmeB350
CsaV3_5G028310	Melon (DHL92) v3.5.1	cucmeB355
CsaV3_5G028310	Melon (DHL92) v3.5.1	cucmeB363
CsaV3_5G028310	Melon (DHL92) v3.6.1	cucmedB342
CsaV3_5G028310	Melon (DHL92) v3.6.1	cucmedB356