Carg26066 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26066
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	HMG-Y-related protein A
Location	Cucurbita_argyrosperma_scaffold_258 : 233030 .. 233726 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGTGTTTCTCTCTCCTCTTCCTTTTTCTCTATCCATAATCCCACCGTCGACACCATGGCCACCGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGGTGCCTTAATTTTACCACTCCACTCTCTGTTTACATTTCGTCAATTTTCTCTTTAATTAAATTTTGGGAATTTGTTTCACAGATGATTATGTCAGCGATCGACGCTCTCAACGACAAAAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCCATCACTTGGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGCCGTGGTCGTCCTCCCAAGCCTAAAGTCCCTCTCCCGCCAGGCACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCGAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAGCCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCCACGTCGGTCCCGGTCGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGATTAAACCGGCCGTCGCCCCAGTTGGGTGCTGA

mRNA sequence

TACAGTGTTTCTCTCTCCTCTTCCTTTTTCTCTATCCATAATCCCACCGTCGACACCATGGCCACCGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGATGATTATGTCAGCGATCGACGCTCTCAACGACAAAAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCCATCACTTGGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGCCGTGGTCGTCCTCCCAAGCCTAAAGTCCCTCTCCCGCCAGGCACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCGAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAGCCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCCACGTCGGTCCCGGTCGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGATTAAACCGGCCGTCGCCCCAGTTGGGTGCTGA

Coding sequence (CDS)

ATGGCCACCGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGATGATTATGTCAGCGATCGACGCTCTCAACGACAAAAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCCATCACTTGGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGCCGTGGTCGTCCTCCCAAGCCTAAAGTCCCTCTCCCGCCAGGCACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCGAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAGCCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCCACGTCGGTCCCGGTCGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGATTAAACCGGCCGTCGCCCCAGTTGGGTGCTGA

Protein sequence

MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC

Homology

[Close]

BLAST of Carg26066 vs. NCBI nr
Match: XP_022953026.1 (HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related protein B-like [Cucurbita maxima])

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF
Sbjct: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKPSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAV 180
           XXXXXXXXXXXISQPKKKPSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAV
Sbjct: 121 XXXXXXXXXXXISQPKKKPSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

[Close]

BLAST of Carg26066 vs. NCBI nr
Match: XP_023545599.1 (HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.4 bits (516), Expect = 6.8e-49
Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MATADQ NNPPXXXXXXXXXXXXXX IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF
Sbjct: 1   MATADQHNNPPXXXXXXXXXXXXXXMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKPSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAV 180
           XXXXXXXXXXXISQPKKKPSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAV
Sbjct: 121 XXXXXXXXXXXISQPKKKPSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

[Close]

BLAST of Carg26066 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 174/186 (93.55%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT DQLNNPPXXXXXXXXXXXXX  IM+AID+LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKPSS-GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKK +S   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Carg26066 vs. NCBI nr
Match: XP_004150116.1 (PREDICTED: HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_5G568810 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43
Identity = 173/186 (93.01%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT DQLNNPPXXXXXXXXXXXXX  IM+AID+LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKPSS-GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKK +S   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Carg26066 vs. NCBI nr
Match: XP_022938491.1 (HMG-Y-related protein A [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 4.7e-42
Identity = 170/186 (91.40%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           M T DQLNNPPXXXXXXXXXXXXXX IM+AI+ALNDKNGVSK+ +TKQIESTYGDLPPAF
Sbjct: 1   MGTEDQLNNPPXXXXXXXXXXXXXXMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPL XXXXXXXXXXXX
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKPSSGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKK S+GS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTSTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKPA 180

Query: 181 VAPVGC 186
           VAP+GC
Sbjct: 181 VAPIGC 186

[Close]

BLAST of Carg26066 vs. TAIR10
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-19
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 27 IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMK 86
          IM AI++LNDKNG +K+ + K IEST   LPP+  TLL++HL+ MK+TGQL+ VKNNYMK
Sbjct: 30 IMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNYMK 89

Query: 87 PDPNAP 93
          PDP+AP
Sbjct: 90 PDPDAP 95

[Close]

BLAST of Carg26066 vs. TAIR10
Match: AT1G48620.1 (high mobility group A5)

HSP 1 Score: 54.7 bits (130), Expect = 7.1e-08
Identity = 40/115 (34.78%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 27  IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMK 86
           I +AI ALN+ +G SK  +++ IE  Y  +P A   LLTHHL  +K +G L+ VK +Y  
Sbjct: 82  ICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKKSYKX 141

Query: 87  -------------------------------PDP---NAPP---KRGRGRPPKPK 105
                                          PDP   ++ P   KRGRGRPPK K
Sbjct: 142 XXXXXXXXXXXVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAK 196

[Close]

BLAST of Carg26066 vs. TAIR10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-07
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 27  IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMK 86
           I +AI ALN+ +G SK  +++ IE  Y  L  A   LLTHHL  +K +G L  VK +Y  
Sbjct: 72  ICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMVKKSYKI 131

Query: 87  PDPNAPP 94
              + PP
Sbjct: 132 AGSSTPP 138

[Close]

BLAST of Carg26066 vs. Swiss-Prot
Match: sp|Q00423|HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-22
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 27  IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMK 86
           I+  ++ALN+ NG +KS ++K IE+TYG+LP A  T+L  HL+ MK +G+L F +NNYMK
Sbjct: 19  IVKTLEALNEPNGSNKSAISKYIETTYGELPDA--TVLGSHLNKMKDSGELSFKQNNYMK 78

Query: 87  PDPNAPPKRGRGRPPKPKVPLP 109
            DPNAPPKRGRGRPPKPK PLP
Sbjct: 79  ADPNAPPKRGRGRPPKPKTPLP 98

[Close]

BLAST of Carg26066 vs. Swiss-Prot
Match: sp|Q10370|HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 33  ALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAP 92
           ALN+ +G +KS ++K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLP 109
           PKRGRGRPPKPKVPLP
Sbjct: 61  PKRGRGRPPKPKVPLP 74

[Close]

BLAST of Carg26066 vs. Swiss-Prot
Match: sp|Q43386|HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.2e-18
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 27 IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMK 86
          IM AI++LNDKNG +K+ + K IEST   LPP+  TLL++HL+ MK+TGQL+ VKNNYMK
Sbjct: 30 IMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNYMK 89

Query: 87 PDPNAP 93
          PDP+AP
Sbjct: 90 PDPDAP 95

[Close]

BLAST of Carg26066 vs. Swiss-Prot
Match: sp|Q9FYS5|HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.5e-15
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 27 IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMK 86
          I++AI+ L+DK+G +KS ++K IE  YG LPPA  +LLT HL  MK++G+L+F+KNNY +
Sbjct: 19 ILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKESGELVFLKNNYFR 78

Query: 87 PD-PNAPPKRG 97
             P+APPKRG
Sbjct: 79 AGAPDAPPKRG 89

[Close]

BLAST of Carg26066 vs. TrEMBL
Match: tr|A0A1S3CSD8|A0A1S3CSD8_CUCME (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.7e-44
Identity = 174/186 (93.55%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT DQLNNPPXXXXXXXXXXXXX  IM+AID+LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKPSS-GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKK +S   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Carg26066 vs. TrEMBL
Match: tr|A0A0A0KPG4|A0A0A0KPG4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 173/186 (93.01%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT DQLNNPPXXXXXXXXXXXXX  IM+AID+LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPXXXXXXXXXXXXXEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKPSS-GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXXISQPKKK +S   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXISQPKKKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Carg26066 vs. TrEMBL
Match: tr|A0A067KPL1|A0A067KPL1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04730 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.0e-29
Identity = 90/117 (76.92%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 27  IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMK 86
           IM AI+ALNDKNG +KS ++KQIE+ Y DLP A TTLL+HHL+ MKQ+GQL+ VKNNYMK
Sbjct: 47  IMQAIEALNDKNGSNKSAISKQIETIYPDLPAAHTTLLSHHLNKMKQSGQLVMVKNNYMK 106

Query: 87  PDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXXXXXXXXXXXXXISQPKKKPSSGS 144
           PDPNAPPKRGRGRPPKPKVPLP   XXXXXXXXXXXXXXXXXXXX + PKKK  +GS
Sbjct: 107 PDPNAPPKRGRGRPPKPKVPLPPGTXXXXXXXXXXXXXXXXXXXXXASPKKKSPTGS 163

[Close]

BLAST of Carg26066 vs. TrEMBL
Match: tr|A5AYX2|A5AYX2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005586 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 137/186 (73.66%), Postives = 150/186 (80.65%), Query Frame = 0


Query: 1   MATADQLNNPPXXXXXXXXXXXXXXXIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT ++ NNPP               IM+AI+ALNDK+G +KS ++K IESTYGDLP A 
Sbjct: 1   MAT-EEPNNPP---QPPSSIPQYSEMIMAAIEALNDKSGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPXXXXXXXXXXXX 120
           +TLL HHL+ MKQ+G L+ VKNNYMKPDPNAPP+RGRGRPPKPKVPLP   XXXXXXXXX
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTXXXXXXXXX 120

Query: 121 XXXXXXXXXXXISQPKKKPS-SGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180
           XXXXXXXXXXX S PKK  S SG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA
Sbjct: 121 XXXXXXXXXXXXSPPKKASSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPA 180

Query: 181 VAPVGC 186
           V PVGC
Sbjct: 181 VVPVGC 182

[Close]

BLAST of Carg26066 vs. TrEMBL
Match: tr|B9SP65|B9SP65_RICCO (Histone H1, putative OS=Ricinus communis OX=3988 GN=RCOM_0628910 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 27  IMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMK 86
           I++AI++LNDKNG +KS ++KQ+E+TY DLPPA TTLL+HHL+ MKQ+GQL+ VKNNYMK
Sbjct: 35  ILAAIESLNDKNGSNKSAISKQMETTYPDLPPAHTTLLSHHLNKMKQSGQLVLVKNNYMK 94

Query: 87  PDPNAPPKRGRGRPPKPKVPLP 109
           PDPNAPPKRGRGRPPKPK PLP
Sbjct: 95  PDPNAPPKRGRGRPPKPKAPLP 116

The following BLAST results are available for this feature:

BLAST of Carg26066 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953026.1	1.1e-49	100.00	HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related ...	[more]
XP_023545599.1	6.8e-49	98.92	HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo]	[more]
XP_008466945.1	1.5e-43	93.55	PREDICTED: HMG-Y-related protein A [Cucumis melo]	[more]
XP_004150116.1	1.9e-43	93.01	PREDICTED: HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical pr...	[more]
XP_022938491.1	4.7e-42	91.40	HMG-Y-related protein A [Cucurbita moschata]	[more]

BLAST of Carg26066 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	4.0e-19	63.64	high mobility group A	[more]
AT1G48620.1	7.1e-08	34.78	high mobility group A5	[more]
AT3G18035.1	2.1e-07	41.79	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of Carg26066 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q00423\|HMGYA_SOYBN	4.8e-22	62.20	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q10370\|HMGYB_SOYBN	1.6e-20	64.47	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q43386\|HMGYA_ARATH	7.2e-18	63.64	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
sp\|Q9FYS5\|HMGYA_MAIZE	7.5e-15	54.93	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of Carg26066 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSD8\|A0A1S3CSD8_CUCME	9.7e-44	93.55	HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1	[more]
tr\|A0A0A0KPG4\|A0A0A0KPG4_CUCSA	1.3e-43	93.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1	[more]
tr\|A0A067KPL1\|A0A067KPL1_JATCU	3.0e-29	76.92	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04730 PE=4 SV=1	[more]
tr\|A5AYX2\|A5AYX2_VITVI	1.2e-28	73.66	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005586 PE=4 SV=1	[more]
tr\|B9SP65\|B9SP65_RICCO	1.5e-28	75.61	Histone H1, putative OS=Ricinus communis OX=3988 GN=RCOM_0628910 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0000785	chromatin
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR031059	HMGA_plant
IPR036388	WH-like_DNA-bd_sf
IPR005818	Histone_H1/H5_H15
IPR000116	HMGA
IPR017956	AT_hook_DNA-bd_motif

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26066-RA	Carg26066-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 142..152 score: 69.32 coord: 94..104 score: 77.27 coord: 114..125 score: 67.71
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 144..156 e-value: 2.2 score: 13.3 coord: 116..128 e-value: 2.6 score: 12.9 coord: 167..179 e-value: 1.4 score: 14.4 coord: 94..106 e-value: 11.0 score: 9.3
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 92..104 score: 65.93 coord: 107..118 score: 41.67 coord: 133..152 score: 43.57 coord: 118..129 score: 50.0
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 17..83 e-value: 9.2E-18 score: 75.0
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 21..82 e-value: 2.6E-8 score: 34.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 19..88 score: 19.925
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 16..95 e-value: 7.5E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..173
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 17..183
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF49	SUBFAMILY NOT NAMED	coord: 17..183
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 15..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26066	Cla003937	Watermelon (97103) v1	carwmB0424
Carg26066	Csa5G568810	Cucumber (Chinese Long) v2	carcuB0461
Carg26066	ClCG01G006370	Watermelon (Charleston Gray)	carwcgB0420
Carg26066	CSPI05G19460	Wild cucumber (PI 183967)	carcpiB0465
Carg26066	Cucsa.280260	Cucumber (Gy14) v1	carcgyB0494
Carg26066	CmaCh15G009640	Cucurbita maxima (Rimu)	carcmaB0594
Carg26066	CmoCh04G022170	Cucurbita moschata (Rifu)	carcmoB0580
Carg26066	CmoCh15G010060	Cucurbita moschata (Rifu)	carcmoB0579
Carg26066	Lsi09G006710	Bottle gourd (USVL1VR-Ls)	carlsiB388
Carg26066	Cp4.1LG01g18390	Cucurbita pepo (Zucchini)	carcpeB0600
Carg26066	Cp4.1LG13g03600	Cucurbita pepo (Zucchini)	carcpeB0599
Carg26066	CsGy5G018970	Cucumber (Gy14) v2	carcgybB0435
Carg26066	CsaV3_5G028310	Cucumber (Chinese Long) v3	carcucB0460
Carg26066	Cla97C01G006670	Watermelon (97103) v2	carwmbB0450
Carg26066	Bhi12G000795	Wax gourd	carwgoB0513

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26066	Silver-seed gourd	carcarB229
Carg26066	Cucurbita maxima (Rimu)	carcmaB0595
Carg26066	Wild cucumber (PI 183967)	carcpiB0464
Carg26066	Cucumber (Chinese Long) v2	carcuB0459
Carg26066	Melon (DHL92) v3.5.1	carmeB0435
Carg26066	Melon (DHL92) v3.6.1	carmedB0437
Carg26066	Watermelon (97103) v2	carwmbB0451