CmoCh04G022170 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G022170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionWinged-helix DNA-binding transcription factor family protein, putative isoform 2
LocationCmo_Chr04 : 16533783 .. 16534844 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCCCCTCCTCTACCTATTTCCCCTTTTTAAATCCTCTCCTTTCCCTGTCCTCCATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCCTCTTCCTTTTTCTCTATCCATAATCCCACCGTCGACACCATGGCCACCGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGGTGCCTTAATTTTACCACTCCACTCTCTGTTTACATTTTGTCAATTTTGTCTTCAATTAAATTTTGGGAATTTGTTTCACAGATGATTATGTCAGCGATCGACGCTCTCAACGACAAAAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCCATCACTTGGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGCCGTGGTCGTCCTCCCAAGCCTAAAGTCCCTCTCCCGCCGGGCACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCGAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAGCCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCCACGTCGGTTCCGGTCGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGATTAAGCCGGCCGTCGCCCCCGTTGGGTGCTGAGTGGAGATTAAAAAAAACAGAGGATGAGAGAGAGAGATAGATAGAGAGAGAAAAAGATGAATTTGTTTAGGTTGTGTTTAGCTGGTCGATCTCTCCGGAAATTGCTCTGTTTTTTTATTTTTTTTTTCCTAATTTTAAAAATTATTAATTTTTTTCTTTTTTTTCTTCTGTGCATTACGTGGCGGGTGCTGAATGGCTGTAATTCAGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTAACGACTGTTTAGGCTTTTTTTTTTTTCCTCCTCTTTCCGC

mRNA sequence

GATCCCCTCCTCTACCTATTTCCCCTTTTTAAATCCTCTCCTTTCCCTGTCCTCCATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCCTCTTCCTTTTTCTCTATCCATAATCCCACCGTCGACACCATGGCCACCGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGATGATTATGTCAGCGATCGACGCTCTCAACGACAAAAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCCATCACTTGGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGCCGTGGTCGTCCTCCCAAGCCTAAAGTCCCTCTCCCGCCGGGCACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCGAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAGCCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCCACGTCGGTTCCGGTCGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGATTAAGCCGGCCGTCGCCCCCGTTGGGTGCTGAGTGGAGATTAAAAAAAACAGAGGATGAGAGAGAGAGATAGATAGAGAGAGAAAAAGATGAATTTGTTTAGGTTGTGTTTAGCTGGTCGATCTCTCCGGAAATTGCTCTGTTTTTTTATTTTTTTTTTCCTAATTTTAAAAATTATTAATTTTTTTCTTTTTTTTCTTCTGTGCATTACGTGGCGGGTGCTGAATGGCTGTAATTCAGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTAACGACTGTTTAGGCTTTTTTTTTTTTCCTCCTCTTTCCGC

Coding sequence (CDS)

ATGGCCACCGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGATGATTATGTCAGCGATCGACGCTCTCAACGACAAAAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCCATCACTTGGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGCCGTGGTCGTCCTCCCAAGCCTAAAGTCCCTCTCCCGCCGGGCACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCGAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAGCCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCCACGTCGGTTCCGGTCGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGATTAAGCCGGCCGTCGCCCCCGTTGGGTGCTGA
Homology
[Close]
BLAST of CmoCh04G022170 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.7e-46
Identity = 110/184 (59.78%), Postives = 132/184 (71.74%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT +++N P        SLP YPEMI+  ++ALN+ NG +KS ++K IE+TYG+LP A 
Sbjct: 1   MAT-EEVNKPQ-------SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA- 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRPPKPK PLPPGTVVSPPRPRG
Sbjct: 61  -TVLGSHLNKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVA-SPPRGRGRPPKIKPA 180
           RPPK  DP AP   PK K + GSGRPRGRP K P+    + P A S  R RGRPPK+KP 
Sbjct: 121 RPPK--DPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQ 172

Query: 181 VAPV 184
           +  V
Sbjct: 181 LTEV 172

[Close]
BLAST of CmoCh04G022170 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.9e-43
Identity = 108/189 (57.14%), Postives = 130/189 (68.78%), Query Frame = 1 

Query: 16  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AI++LNDKNG +K+ + K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 SRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPP-------RGRGRPPKIK 186
            +DP  P   P++K  +GSGRPRGRPPK P+    +V    P        RGRGRPPK+K
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 198

[Close]
BLAST of CmoCh04G022170 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-38
Identity = 94/152 (61.84%), Postives = 112/152 (73.68%), Query Frame = 1 

Query: 33  ALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAP 92
           ALN+ +G +KS ++K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPDE--TVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPK 152
           PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPK  DP AP   PK K +  +GRPRGRP K
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPK--DPNAPPKSPKAKATPATGRPRGRPKK 120

Query: 153 YPK-PAPTSVPVASPPRGRGRPPKIKPAVAPV 184
             + PA  S    S  R RGRPPK+KP +  V
Sbjct: 121 VARSPAVPSPTAVSTGRPRGRPPKVKPQLTEV 148

[Close]
BLAST of CmoCh04G022170 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.6e-32
Identity = 91/182 (50.00%), Postives = 120/182 (65.93%), Query Frame = 1 

Query: 16  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+P +P YPEMI++AI+ L+DK+G +KS ++K IE  YG LPPA  +LLT HL  MK++G
Sbjct: 9   PSP-IPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKESG 68

Query: 76  QLLFVKNNYMKPD-PNAPPKRGRGRPPK---PKVPLP-PGTVVSPPRPRGRPPKSRDPFA 135
           +L+F+KNNY +   P+APPKRGRGRPPK   P  P P P +  S  R RGRPPK++   +
Sbjct: 69  ELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGRPPKAK---S 128

Query: 136 PISQPKKKPSSGSGRPRGRPPK----------YPKPAPTSVPVASPP--RGRGRPPKIKP 181
           P+    K+ ++G  +PRGRPPK           P PAP      S P  RGRGRPPK++P
Sbjct: 129 PLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRGRPPKVRP 186

[Close]
BLAST of CmoCh04G022170 vs. TrEMBL
Match: A0A0A0KPG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G568810 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 7.5e-91
Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPA 180
           RPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS  PVA PPRGRGRPPK+KPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]
BLAST of CmoCh04G022170 vs. TrEMBL
Match: M5XVE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018145mg PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-65
Identity = 137/191 (71.73%), Postives = 151/191 (79.06%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT +   NPP PPPPAPSLP Y EMIM+AI+ALND NG +KS +   IESTYGDLPPA 
Sbjct: 1   MATENS-ENPPAPPPPAPSLPQYTEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPK------YPKPAPTSVPVASPPRGRGRPP 180
           RPPK RDPF+P ++PK    SG+GRPRGRPPK       P  AP   P    PRGRGRPP
Sbjct: 121 RPPKPRDPFSPQAEPKS--PSGTGRPRGRPPKKAKTASAPPQAPAPAPATGAPRGRGRPP 180

Query: 181 KIKPAVAPVGC 186
           K+KPAVAPVGC
Sbjct: 181 KVKPAVAPVGC 188

[Close]
BLAST of CmoCh04G022170 vs. TrEMBL
Match: A5AYX2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005586 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.6e-62
Identity = 133/187 (71.12%), Postives = 153/187 (81.82%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT ++ NNPPQPP    S+P Y EMIM+AI+ALNDK+G +KS ++K IESTYGDLP A 
Sbjct: 1   MAT-EEPNNPPQPPS---SIPQYSEMIMAAIEALNDKSGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLL HHL+ MKQ+G L+ VKNNYMKPDPNAPP+RGRGRPPKPKVPLPPGTV++PPRPRG
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLAPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTS--VPVASPPRGRGRPPKIKP 180
           RPPK RDPFAP+S PKK  SSGSG+PRGRPPK PK   +S   P    PR RGRPPK+KP
Sbjct: 121 RPPKPRDPFAPVSPPKKA-SSGSGKPRGRPPKKPKVGTSSAPAPATGAPRPRGRPPKVKP 180

Query: 181 AVAPVGC 186
           AV PVGC
Sbjct: 181 AVVPVGC 182

[Close]
BLAST of CmoCh04G022170 vs. TrEMBL
Match: D7T8P4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05360 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.3e-62
Identity = 133/187 (71.12%), Postives = 152/187 (81.28%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT ++ NNPPQPP    S+P Y EMIM+AI+ALNDK G +KS ++K IESTYGDLP A 
Sbjct: 1   MAT-EEPNNPPQPPS---SIPQYSEMIMAAIEALNDKGGSNKSSISKYIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLL HHL+ MKQ+G L+ VKNNYMKPDPNAPP+RGRGRPPKPKVPLPPGTV++PPRPRG
Sbjct: 61  STLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLAPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTS--VPVASPPRGRGRPPKIKP 180
           RPPK RDPFAP+S PKK  SSGSG+PRGRPPK PK   +S   P    PR RGRPPK+KP
Sbjct: 121 RPPKPRDPFAPVSPPKKA-SSGSGKPRGRPPKKPKVGTSSAPAPATGAPRPRGRPPKVKP 180

Query: 181 AVAPVGC 186
           AV PVGC
Sbjct: 181 AVVPVGC 182

[Close]
BLAST of CmoCh04G022170 vs. TrEMBL
Match: A0A067KPL1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04730 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.7e-61
Identity = 128/185 (69.19%), Postives = 147/185 (79.46%), Query Frame = 1 

Query: 6   QLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLT 65
           Q   P QP   + ++P YPE+IM AI+ALNDKNG +KS ++KQIE+ Y DLP A TTLL+
Sbjct: 26  QQTQPQQPQQQSSTIPQYPELIMQAIEALNDKNGSNKSAISKQIETIYPDLPAAHTTLLS 85

Query: 66  HHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKS 125
           HHL+ MKQ+GQL+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTV+SPPRPRGRPPK 
Sbjct: 86  HHLNKMKQSGQLVMVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVISPPRPRGRPPKP 145

Query: 126 RDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPP-------RGRGRPPKIKP 184
           RDPFAP++ PKKK  +GSGRPRGRPPK  KPA    PV   P       RGRGRPPK+KP
Sbjct: 146 RDPFAPVASPKKKSPTGSGRPRGRPPKKAKPAGAPAPVTVSPSQAKGVKRGRGRPPKVKP 205

[Close]
BLAST of CmoCh04G022170 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-44
Identity = 108/189 (57.14%), Postives = 130/189 (68.78%), Query Frame = 1 

Query: 16  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AI++LNDKNG +K+ + K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 SRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPP-------RGRGRPPKIK 186
            +DP  P   P++K  +GSGRPRGRPPK P+    +V    P        RGRGRPPK+K
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 198

[Close]
BLAST of CmoCh04G022170 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 67.8 bits (164), Expect = 8.1e-12
Identity = 62/179 (34.64%), Postives = 80/179 (44.69%), Query Frame = 1 

Query: 2   ATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFT 61
           A   Q    P PP P+ S P Y +MI +AI ALN+ +G SK  +++ IE  Y  +P A  
Sbjct: 57  APPQQPQTSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHG 116

Query: 62  TLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGR 121
            LLTHHL  +K +G L+ VK +Y       PP              PP +V     P   
Sbjct: 117 ALLTHHLKTLKTSGILVMVKKSYKLASTPPPP--------------PPTSVA----PSLE 176

Query: 122 PPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 181
           PP+S D     +QP   P   S  P+                 +  RGRGRPPK KP V
Sbjct: 177 PPRS-DFIVNENQPLPDPVLASSTPQ-----------------TIKRGRGRPPKAKPDV 199

[Close]
BLAST of CmoCh04G022170 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 57.8 bits (138), Expect = 8.4e-09
Identity = 69/203 (33.99%), Postives = 94/203 (46.31%), Query Frame = 1 

Query: 11  PQPP----PPAPSLPH--YPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLL 70
           PQP      P  S+PH  Y EMI +AI ALN+ +G SK  +++ IE  Y  L  A   LL
Sbjct: 50  PQPQMFQLSPHVSMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALL 109

Query: 71  THHLDVMKQTGQLLFVKNNYMKPDPNAPP--------KRGRGRP-PKPKV-------PLP 130
           THHL  +K +G L  VK +Y     + PP           +G   P+ ++       P+ 
Sbjct: 110 THHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMA 169

Query: 131 PGTVVSP-PRPRGRPPKSRDPFAPISQPKKKPSS---GSGRPRGRPPKYPKPAPTSVPVA 184
            G+   P  R RGRPPK +    P    +  P++    +G+P     +   P P   PV 
Sbjct: 170 SGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVT 229

[Close]
BLAST of CmoCh04G022170 vs. NCBI nr
Match: gi|659133908|ref|XP_008466945.1| (PREDICTED: HMG-Y-related protein A [Cucumis melo])

HSP 1 Score: 341.7 bits (875), Expect = 8.2e-91
Identity = 173/186 (93.01%), Postives = 179/186 (96.24%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPA 180
           RPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS  PVA PPRGRGRPPK+KPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]
BLAST of CmoCh04G022170 vs. NCBI nr
Match: gi|449464798|ref|XP_004150116.1| (PREDICTED: HMG-Y-related protein A [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.1e-90
Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPA 180
           RPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS  PVA PPRGRGRPPK+KPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]
BLAST of CmoCh04G022170 vs. NCBI nr
Match: gi|1009154911|ref|XP_015895428.1| (PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba])

HSP 1 Score: 265.8 bits (678), Expect = 5.7e-68
Identity = 146/190 (76.84%), Postives = 159/190 (83.68%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT +  NNPP PPPPAPSLP YPEMIM+AI++LNDKNG +KS ++K IESTYGDLP A 
Sbjct: 1   MATENS-NNPPPPPPPAPSLPQYPEMIMTAIESLNDKNGSNKSAISKHIESTYGDLPAAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHL+ MKQ G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTV+SPPRPRG
Sbjct: 61  TTLLTHHLNRMKQNGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKK--PSSGSGRPRGRPPKYPKPAPTSVPVASP---PRGRGRPPK 180
           RPPK  DPFAP S  KKK   SSGSGRPRGRPPK  K   TS P A+P   PRGRGRPPK
Sbjct: 121 RPPKPIDPFAPTSIAKKKTSSSSGSGRPRGRPPKKVK---TSSPAAAPDGVPRGRGRPPK 180

Query: 181 IKPAVAPVGC 186
           +KPAVAPVGC
Sbjct: 181 VKPAVAPVGC 186

[Close]
BLAST of CmoCh04G022170 vs. NCBI nr
Match: gi|596125532|ref|XP_007221891.1| (hypothetical protein PRUPE_ppa018145mg [Prunus persica])

HSP 1 Score: 256.5 bits (654), Expect = 3.5e-65
Identity = 137/191 (71.73%), Postives = 151/191 (79.06%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT +   NPP PPPPAPSLP Y EMIM+AI+ALND NG +KS +   IESTYGDLPPA 
Sbjct: 1   MATENS-ENPPAPPPPAPSLPQYTEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPK------YPKPAPTSVPVASPPRGRGRPP 180
           RPPK RDPF+P ++PK    SG+GRPRGRPPK       P  AP   P    PRGRGRPP
Sbjct: 121 RPPKPRDPFSPQAEPKS--PSGTGRPRGRPPKKAKTASAPPQAPAPAPATGAPRGRGRPP 180

Query: 181 KIKPAVAPVGC 186
           K+KPAVAPVGC
Sbjct: 181 KVKPAVAPVGC 188

[Close]
BLAST of CmoCh04G022170 vs. NCBI nr
Match: gi|645229373|ref|XP_008221436.1| (PREDICTED: HMG-Y-related protein B-like [Prunus mume])

HSP 1 Score: 255.4 bits (651), Expect = 7.8e-65
Identity = 137/185 (74.05%), Postives = 151/185 (81.62%), Query Frame = 1 

Query: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60
           MAT +  +NPP PPPPAPSLP YPEMIM+AI+ALND NG +KS +   IESTYGDLPPA 
Sbjct: 1   MATENS-DNPPAPPPPAPSLPQYPEMIMAAIEALNDSNGSNKSAIATYIESTYGDLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            TLL HHL+ MKQ+G+L+ VKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  ATLLAHHLNKMKQSGELVLVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 180
           RPPK RDPF+P  QP+ K  SG+GRPRGRPPK  K A         PRGRGRPPK+KPAV
Sbjct: 121 RPPKPRDPFSP--QPEPKSPSGTGRPRGRPPKKAKTA------TGAPRGRGRPPKVKPAV 176

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 176

The following BLAST results are available for this feature:
BLAST of CmoCh04G022170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HMGYA_SOYBN4.7e-4659.78HMG-Y-related protein A OS=Glycine max PE=2 SV=1[more]
HMGYA_ARATH4.9e-4357.14HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1[more]
HMGYB_SOYBN1.6e-3861.84HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1[more]
HMGYA_MAIZE6.6e-3250.00HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1[more]
BLAST of CmoCh04G022170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPG4_CUCSA7.5e-9192.47Uncharacterized protein OS=Cucumis sativus GN=Csa_5G568810 PE=3 SV=1[more]
M5XVE0_PRUPE2.4e-6571.73Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018145mg PE=3 SV=1[more]
A5AYX2_VITVI5.6e-6271.12Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005586 PE=3 SV=1[more]
D7T8P4_VITVI7.3e-6271.12Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05360 PE=3 SV=... [more]
A0A067KPL1_JATCU4.7e-6169.19Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04730 PE=3 SV=1[more]
BLAST of CmoCh04G022170 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14900.12.8e-4457.14 high mobility group A[more]
AT1G48620.18.1e-1234.64 high mobility group A5[more]
AT3G18035.18.4e-0933.99 winged-helix DNA-binding transcription factor family protein[more]
BLAST of CmoCh04G022170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133908|ref|XP_008466945.1|8.2e-9193.01PREDICTED: HMG-Y-related protein A [Cucumis melo][more]
gi|449464798|ref|XP_004150116.1|1.1e-9092.47PREDICTED: HMG-Y-related protein A [Cucumis sativus][more]
gi|1009154911|ref|XP_015895428.1|5.7e-6876.84PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba][more]
gi|596125532|ref|XP_007221891.1|3.5e-6571.73hypothetical protein PRUPE_ppa018145mg [Prunus persica][more]
gi|645229373|ref|XP_008221436.1|7.8e-6574.05PREDICTED: HMG-Y-related protein B-like [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000116HMGA
IPR005818Histone_H1/H5_H15
IPR011991Winged helix-turn-helix DNA-binding domain
IPR017956AT_hook_DNA-bd_motif
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000785chromatin
GO:0000786nucleosome
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006334nucleosome assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000785 chromatin
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G022170.1CmoCh04G022170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000116High mobility group protein HMGAPRINTSPR00930HIGHMOBLTYIYcoord: 92..104
score: 5.8E-13coord: 107..118
score: 5.8E-13coord: 133..152
score: 5.8E-13coord: 118..129
score: 5.8
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 21..81
score: 3.
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 17..83
score: 9.2
IPR005818Linker histone H1/H5, domain H15PROFILEPS51504H15coord: 19..88
score: 19
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 17..102
score: 7.3
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 15..95
score: 1.36
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 142..152
score: 1.3E-16coord: 94..104
score: 1.3E-16coord: 114..125
score: 1.3
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 94..106
score: 11.0coord: 116..128
score: 2.6coord: 167..179
score: 1.4coord: 144..156
score:
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 1..183
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G022170Cucsa.280260Cucumber (Gy14) v1cgycmoB0775
CmoCh04G022170CmaCh15G009640Cucurbita maxima (Rimu)cmacmoB310
CmoCh04G022170Cla003937Watermelon (97103) v1cmowmB706
CmoCh04G022170Csa5G568810Cucumber (Chinese Long) v2cmocuB723
CmoCh04G022170ClCG01G006370Watermelon (Charleston Gray)cmowcgB640
CmoCh04G022170CSPI05G19460Wild cucumber (PI 183967)cmocpiB730
CmoCh04G022170Lsi09G006710Bottle gourd (USVL1VR-Ls)cmolsiB610
CmoCh04G022170Cp4.1LG13g03600Cucurbita pepo (Zucchini)cmocpeB658
CmoCh04G022170Cp4.1LG01g18390Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G022170CsaV3_5G028310Cucumber (Chinese Long) v3cmocucB0855
CmoCh04G022170Cla97C01G006670Watermelon (97103) v2cmowmbB681
CmoCh04G022170Bhi12G000795Wax gourdcmowgoB0829
CmoCh04G022170CsGy5G018970Cucumber (Gy14) v2cgybcmoB633
CmoCh04G022170Carg26066Silver-seed gourdcarcmoB0580
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G022170CmoCh15G010060Cucurbita moschata (Rifu)cmocmoB263
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G022170Bottle gourd (USVL1VR-Ls)cmolsiB615
CmoCh04G022170Cucumber (Gy14) v2cgybcmoB656
CmoCh04G022170Melon (DHL92) v3.6.1cmomedB703
CmoCh04G022170Melon (DHL92) v3.6.1cmomedB709
CmoCh04G022170Silver-seed gourdcarcmoB0252
CmoCh04G022170Silver-seed gourdcarcmoB0271
CmoCh04G022170Cucumber (Chinese Long) v3cmocucB0878
CmoCh04G022170Cucumber (Chinese Long) v3cmocucB0879
CmoCh04G022170Watermelon (97103) v2cmowmbB676
CmoCh04G022170Watermelon (97103) v2cmowmbB753
CmoCh04G022170Wax gourdcmowgoB0823
CmoCh04G022170Wax gourdcmowgoB0824
CmoCh04G022170Cucurbita moschata (Rifu)cmocmoB471
CmoCh04G022170Cucumber (Gy14) v1cgycmoB0545
CmoCh04G022170Cucumber (Gy14) v1cgycmoB0777
CmoCh04G022170Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G022170Wild cucumber (PI 183967)cmocpiB752
CmoCh04G022170Cucumber (Chinese Long) v2cmocuB743
CmoCh04G022170Melon (DHL92) v3.5.1cmomeB621
CmoCh04G022170Melon (DHL92) v3.5.1cmomeB614
CmoCh04G022170Melon (DHL92) v3.5.1cmomeB627
CmoCh04G022170Watermelon (Charleston Gray)cmowcgB636
CmoCh04G022170Watermelon (97103) v1cmowmB710