CsGy5G018970 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTTCAATCGTCTTCTTCCCACCAAACCTACAGTGCTTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTAAAATCACATCATCTACGCCATCTCCTCTGCCACCATGGCTACCGACGACCAACTCAACAACCCGCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGGTACTTCAATTTCTCTTCTTTCTCTCTCTGCCATTTCTTTAATTTTCCTTTTAACTTTAATTTCCGTCTAATTTCTTTCCACAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGTCGTCCACCCAAGCCCAAAGTCCCTCTTCCACCAGGCACCGTCGTTTCTCCCCCACGCCCACGTGGCCGACCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACAACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCCAAACCGGCACCCACCTCTGCTCCACCCGTCGCTGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAATGGAACAAAACTAAAAACAGAGGATGAGAGAGAGAGAGAGAAAAATAGAAATTAGAGAGAGAAAGAAGATGATAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTCATTTTTTTTCTTCCTTCTTTCTTCTAATTTTAAAAATTTTTAATCTTACTTCTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTAATTAATGTGTATTACGTGGCGGGTTATGTAGGGCTGTAATTCTGGTGGGGGTTAGGAGATTGTAATTGCATGTAATTTATTTTACCGGTTGTTAGGGTTTTTTTTTCTTCCCTTCCCTTATTAAACTCTCCATTAAAAAAAATATATTTAAGTTTTAATTTATGCGGCCACTTTAAGGGACTTTAAATCTTTTAATTATTTTATTTTATTTTTTGCTTTTTTCTACTTTAATATATCAAATTGCATTACCTTCTCCTGCAATGGGTAGAATTTGCTTTAATTATTTTAATTCTAAATATGGAACATGATTCCTTTATATTAGGCTTCCAATTTATAATCAATTTCAGAAAAAAAAAATATTAGTTTTCTTCTTTTCTTTTTAATATCCATTATAATGATGAGCATAGCCTTTGGTTGATGCATTTTGAGTTTTATAGGGTTTACTGTTTTTGGTTTTTTATTTACGCCTTTTTATCAAACAATTTACGTATATTTCTTTACCATTTTTGTTTCGGTTGTTATCTTTTTATTATTATTTATGTTTGTCATGCCACACTTGGGATTGGGTTTCAAAATATGTTTTCAATTTTTGGACCCATTTCTTTAGTTTAAAATATCAATGATATTTCATTTTTTACCATTATATTTTCTCCAATTTTTAGGTTTTTGTAATATACTTTTATACGCTGTTTCATTGAAAGAGAAATACTTTTACCCATGGTTGAAGTTGAAAAAGGGTGAGTATGAATTGTTGTTTTAAAGTTGTTTCTAGCCTTGATTTGTTTGGTTACATGCATAATTTAAATTAAGTTTATTGTCTGTTTATTTTTCAATTTTTACTCTGATTTTACACAAATTTTTACAAATTAATTTTAACTGCTGTACTTTCAAATTTTAGTTCTTAAATTTTCAATAAATTTAAAATTCAATATTTATTATCAATTTTTATTGGAATTTCAACTTTAAATTTAAAAAATATGTTAGCATTTTTTTACATGAAAAGATTATTTAAATTTTAATTTGTTAAAAGTATTAGGATTAAATTTGAGATTGAGATTGAACAAAATTAAAAGAAGAGGACGTTTGATTGTAATATGGAGAAAAAGCGAATAAAATGAAAATTTAATCTAAAAATGTATTGATGTTTTGAAATTATTTTCTAGTTTCAAAATATGTTAGTTTCTACATTCCATTTTTAACTTCTAAGTTAACACTCCAAATTCAGGATATGATACTTCTAAGTAATGTGTTTA TTCTTCAATCGTCTTCTTCCCACCAAACCTACAGTGCTTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTAAAATCACATCATCTACGCCATCTCCTCTGCCACCATGGCTACCGACGACCAACTCAACAACCCGCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGTCGTCCACCCAAGCCCAAAGTCCCTCTTCCACCAGGCACCGTCGTTTCTCCCCCACGCCCACGTGGCCGACCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACAACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCCAAACCGGCACCCACCTCTGCTCCACCCGTCGCTGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAATGGAACAAAACTAAAAACAGAGGATGAGAGAGAGAGAGAGAAAAATAGAAATTAGAGAGAGAAAGAAGATGATAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTCATTTTTTTTCTTCCTTCTTTCTTCTAATTTTAAAAATTTTTAATCTTACTTCTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTAATTAATGTGTATTACGTGGCGGGTTATGTAGGGCTGTAATTCTGGTGGGGGTTAGGAGATTGTAATTGCATGTAATTTATTTTACCGGTTGTTAGGGTTTTTTTTTCTTCCCTTCCCTTATTAAACTCTCCATTAAAAAAAATATATTTAAGTTTTAATTTATGCGGCCACTTTAAGGGACTTTAAATCTTTTAATTATTTTATTTTATTTTTTGCTTTTTTCTACTTTAATATATCAAATTGCATTACCTTCTCCTGCAATGGGTAGAATTTGCTTTAATTATTTTAATTCTAAATATGGAACATGATTCCTTTATATTAGGCTTCCAATTTATAATCAATTTCAGAAAAAAAAAATATTAGTTTTCTTCTTTTCTTTTTAATATCCATTATAATGATGAGCATAGCCTTTGGTTGATGCATTTTGAGTTTTATAGGGTTTACTGTTTTTGGTTTTTTATTTACGCCTTTTTATCAAACAATTTACGTATATTTCTTTACCATTTTTGTTTCGGTTGTTATCTTTTTATTATTATTTATGTTTGTCATGCCACACTTGGGATTGGGTTTCAAAATATGTTTTCAATTTTTGGACCCATTTCTTTAGTTTAAAATATCAATGATATTTCATTTTTTACCATTATATTTTCTCCAATTTTTAGGTTTTTGTAATATACTTTTATACGCTGTTTCATTGAAAGAGAAATACTTTTACCCATGGTTGAAGTTGAAAAAGGGTGAGTATGAATTGTTGTTTTAAAGTTGTTTCTAGCCTTGATTTGTTTGGTTACATGCATAATTTAAATTAAGTTTATTGTCTGTTTATTTTTCAATTTTTACTCTGATTTTACACAAATTTTTACAAATTAATTTTAACTGCTGTACTTTCAAATTTTAGTTCTTAAATTTTCAATAAATTTAAAATTCAATATTTATTATCAATTTTTATTGGAATTTCAACTTTAAATTTAAAAAATATGTTAGCATTTTTTTACATGAAAAGATTATTTAAATTTTAATTTGTTAAAAGTATTAGGATTAAATTTGAGATTGAGATTGAACAAAATTAAAAGAAGAGGACGTTTGATTGTAATATGGAGAAAAAGCGAATAAAATGAAAATTTAATCTAAAAATGTATTGATGTTTTGAAATTATTTTCTAGTTTCAAAATATGTTAGTTTCTACATTCCATTTTTAACTTCTAAGTTAACACTCCAAATTCAGGATATGATACTTCTAAGTAATGTGTTTA ATGGCTACCGACGACCAACTCAACAACCCGCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGTCGTCCACCCAAGCCCAAAGTCCCTCTTCCACCAGGCACCGTCGTTTCTCCCCCACGCCCACGTGGCCGACCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACAACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCCAAACCGGCACCCACCTCTGCTCCACCCGTCGCTGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGA MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPVGC
BLAST of CsGy5G018970 vs. NCBI nr
Match: XP_004150116.1 (PREDICTED: HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_5G568810 [Cucumis sativus]) HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of CsGy5G018970 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo]) HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49 Identity = 185/186 (99.46%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of CsGy5G018970 vs. NCBI nr
Match: XP_022953026.1 (HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related protein B-like [Cucurbita maxima]) HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43 Identity = 173/186 (93.01%), Postives = 178/186 (95.70%), Query Frame = 0
BLAST of CsGy5G018970 vs. NCBI nr
Match: XP_022938491.1 (HMG-Y-related protein A [Cucurbita moschata]) HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43 Identity = 169/186 (90.86%), Postives = 178/186 (95.70%), Query Frame = 0
BLAST of CsGy5G018970 vs. NCBI nr
Match: XP_023550058.1 (HMG-Y-related protein A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43 Identity = 169/186 (90.86%), Postives = 178/186 (95.70%), Query Frame = 0
BLAST of CsGy5G018970 vs. TAIR10
Match: AT1G14900.1 (high mobility group A) HSP 1 Score: 95.9 bits (237), Expect = 2.8e-20 Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 0
BLAST of CsGy5G018970 vs. TAIR10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 58.9 bits (141), Expect = 3.8e-09 Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 0
BLAST of CsGy5G018970 vs. TAIR10
Match: AT1G48620.1 (high mobility group A5) HSP 1 Score: 57.8 bits (138), Expect = 8.4e-09 Identity = 41/117 (35.04%), Postives = 55/117 (47.01%), Query Frame = 0
BLAST of CsGy5G018970 vs. TAIR10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 45.8 bits (107), Expect = 3.3e-05 Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 0
BLAST of CsGy5G018970 vs. Swiss-Prot
Match: sp|Q00423|HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 2.6e-23 Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 0
BLAST of CsGy5G018970 vs. Swiss-Prot
Match: sp|Q10370|HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 9.2e-21 Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0
BLAST of CsGy5G018970 vs. Swiss-Prot
Match: sp|Q43386|HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 5.0e-19 Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 0
BLAST of CsGy5G018970 vs. Swiss-Prot
Match: sp|Q9FYS5|HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 3.6e-17 Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 0
BLAST of CsGy5G018970 vs. TrEMBL
Match: tr|A0A0A0KPG4|A0A0A0KPG4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 7.0e-50 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of CsGy5G018970 vs. TrEMBL
Match: tr|A0A1S3CSD8|A0A1S3CSD8_CUCME (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 9.1e-50 Identity = 185/186 (99.46%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of CsGy5G018970 vs. TrEMBL
Match: tr|B9SP65|B9SP65_RICCO (Histone H1, putative OS=Ricinus communis OX=3988 GN=RCOM_0628910 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 5.6e-31 Identity = 67/84 (79.76%), Postives = 78/84 (92.86%), Query Frame = 0
BLAST of CsGy5G018970 vs. TrEMBL
Match: tr|A5AYX2|A5AYX2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005586 PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 9.5e-31 Identity = 137/186 (73.66%), Postives = 153/186 (82.26%), Query Frame = 0
BLAST of CsGy5G018970 vs. TrEMBL
Match: tr|D7T8P4|D7T8P4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g05360 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30 Identity = 137/186 (73.66%), Postives = 152/186 (81.72%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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