Lsi09G006020 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G006020
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTranscription factor CYCLOIDEA
Locationchr09 : 6568549 .. 6569499 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATGATGAAGCAACAAGACATGTTTGGTTGTAACAACAACATCACTGAAATTAATCAAATTGTTTTAGATCATCTAAACCCTAGCATTTCCTCCTCAATGTATCAACAACAACATGAGGATCAGTTCATCATCAACTCATATGATGATCTACATTTCCCACATCCATTTCTCGACGACGACGATGTATTTTTAAGCCACTTTTTATCACAACAACAACAACTCTTCGAAGAAGAAAAACACGACGGGGTTGATGAAACAACAACGACGAGAAAGACGACGACTACGACGACAAAGAAGAAGAAGAAAGTATGTGGTAATTATAGGAAAAATGGAAGGAGCTGCACAAAGAGAAGAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAAAACCATAGAGTGGCTTCTACTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAACCTACTTCTCAAACAATAGTGGGGTTAGCCATGGCAGTGTTTATTCTGGCCAATCAAGTGAGATTGTGTCAGAGATTAATAATCAAGATCAAGAACAAGAACAAGAAGAAGCTGGTGGATTTACGGGCAGTTTCAAAGACAAAAAGGGCAGGCAATTACGTATTGTTGCTAGAGAGGCAAGAGATAGGGCAAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTCTTCAATCCTACATCCTCCTATTAATTTTGATCATCATCTCTCAGGTAATAATAATAATAATAATACCTATCTTGATTATCCAACATTTTCTTGCCCTAATTCCATTTTCCTTCCCTCTCCACTTCCCTTACCCTACTCTTTTTCTGATTCCACATTACTCAAATTGCCCTAA

mRNA sequence

ATGATGATGATGAAGCAACAAGACATGTTTGGTTGTAACAACAACATCACTGAAATTAATCAAATTGTTTTAGATCATCTAAACCCTAGCATTTCCTCCTCAATGTATCAACAACAACATGAGGATCAGTTCATCATCAACTCATATGATGATCTACATTTCCCACATCCATTTCTCGACGACGACGATGTATTTTTAAGCCACTTTTTATCACAACAACAACAACTCTTCGAAGAAGAAAAACACGACGGGGTTGATGAAACAACAACGACGAGAAAGACGACGACTACGACGACAAAGAAGAAGAAGAAAGTATGTGGTAATTATAGGAAAAATGGAAGGAGCTGCACAAAGAGAAGAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAAAACCATAGAGTGGCTTCTACTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAACCTACTTCTCAAACAATAGTGGGGTTAGCCATGGCAGTGTTTATTCTGGCCAATCAAGTGAGATTGTGTCAGAGATTAATAATCAAGATCAAGAACAAGAACAAGAAGAAGCTGGTGGATTTACGGGCAGTTTCAAAGACAAAAAGGGCAGGCAATTACGTATTGTTGCTAGAGAGGCAAGAGATAGGGCAAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTCTTCAATCCTACATCCTCCTATTAATTTTGATCATCATCTCTCAGGTAATAATAATAATAATAATACCTATCTTGATTATCCAACATTTTCTTGCCCTAATTCCATTTTCCTTCCCTCTCCACTTCCCTTACCCTACTCTTTTTCTGATTCCACATTACTCAAATTGCCCTAA

Coding sequence (CDS)

ATGATGATGATGAAGCAACAAGACATGTTTGGTTGTAACAACAACATCACTGAAATTAATCAAATTGTTTTAGATCATCTAAACCCTAGCATTTCCTCCTCAATGTATCAACAACAACATGAGGATCAGTTCATCATCAACTCATATGATGATCTACATTTCCCACATCCATTTCTCGACGACGACGATGTATTTTTAAGCCACTTTTTATCACAACAACAACAACTCTTCGAAGAAGAAAAACACGACGGGGTTGATGAAACAACAACGACGAGAAAGACGACGACTACGACGACAAAGAAGAAGAAGAAAGTATGTGGTAATTATAGGAAAAATGGAAGGAGCTGCACAAAGAGAAGAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAAAACCATAGAGTGGCTTCTACTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAACCTACTTCTCAAACAATAGTGGGGTTAGCCATGGCAGTGTTTATTCTGGCCAATCAAGTGAGATTGTGTCAGAGATTAATAATCAAGATCAAGAACAAGAACAAGAAGAAGCTGGTGGATTTACGGGCAGTTTCAAAGACAAAAAGGGCAGGCAATTACGTATTGTTGCTAGAGAGGCAAGAGATAGGGCAAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTCTTCAATCCTACATCCTCCTATTAATTTTGATCATCATCTCTCAGGTAATAATAATAATAATAATACCTATCTTGATTATCCAACATTTTCTTGCCCTAATTCCATTTTCCTTCCCTCTCCACTTCCCTTACCCTACTCTTTTTCTGATTCCACATTACTCAAATTGCCCTAA

Protein sequence

MMMMKQQDMFGCNNNITEINQIVLDHLNPSISSSMYQQQHEDQFIINSYDDLHFPHPFLDDDDVFLSHFLSQQQQLFEEEKHDGVDETTTTRKTTTTTTKKKKKVCGNYRKNGRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQDQEQEQEEAGGFTGSFKDKKGRQLRIVAREARDRARARARQRTLLKNTSSILHPPINFDHHLSGNNNNNNTYLDYPTFSCPNSIFLPSPLPLPYSFSDSTLLKLP
Homology
[Close]
BLAST of Lsi09G006020 vs. Swiss-Prot
Match: CYCLD_ANTMA (Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-21
Identity = 74/159 (46.54%), Postives = 98/159 (61.64%), Query Frame = 1 

Query: 117 TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 176
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 82  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 141

Query: 177 IKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQDQEQEQEEAGGFTGSFKDKKGRQL- 236
           IK+L Q    + S  S+ S       E+VS     D E   + + G +    +K    + 
Sbjct: 142 IKELVQ----SKSTKSNSSSPCDDCEEVVS----VDSENVTDHSKGKSLKANNKCKEAMD 201

Query: 237 --RIVAREARDRARARARQRTLLKNTSSILHPPINFDHH 273
             +  A+E+R +ARARAR+RT  K     L+  I   +H
Sbjct: 202 SHQAAAKESRAKARARARERTKEKMCIKQLNEAIVLRNH 232

[Close]
BLAST of Lsi09G006020 vs. Swiss-Prot
Match: CYCLD_ANTML (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.9e-21
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 1 

Query: 117 TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 176
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 74  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 133

Query: 177 IKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQDQEQEQEEAGGFTGSFKDKKGRQL- 236
           IK+L Q    + S  S+ S       E+VS     D E   + + G +    +K    + 
Sbjct: 134 IKELVQ----SKSTKSNSSSPCDDCEEVVS----VDSENVTDHSKGKSLKANNKCKEAMD 193

Query: 237 --RIVAREARDRARARARQRT-------------LLKN--------TSSILHPPINFDHH 282
             +  A+E+R +ARARAR+RT             +L+N          + +HP   F   
Sbjct: 194 SHQAAAKESRAKARARARERTKEKMCIKQLNEAIVLRNHQFEVSGTREAFVHPVFGFHQQ 253

[Close]
BLAST of Lsi09G006020 vs. Swiss-Prot
Match: TCP12_ARATH (Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.0e-21
Identity = 84/206 (40.78%), Postives = 110/206 (53.40%), Query Frame = 1 

Query: 54  FPHPFLD--DDDVFLSHFLSQQQQLFEEEKHDGVDETTTTRKTTTTTTKKKKKVCGNYRK 113
           F   FL+  D+   ++ FL QQQ +        V E+           KK +K       
Sbjct: 47  FSSDFLESFDESFLINQFLLQQQDVAAN-----VVESPWKFCKKLELKKKNEKCVDGSTS 106

Query: 114 NGRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLL 173
                 +   K+DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWL  
Sbjct: 107 QEVQWRRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFS 166

Query: 174 NSNSAIKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQDQEQEQEEAGGFTGSFKDKK 233
            S ++IK LK+   ++  G        G+   +      Q  E+E++E      S +  K
Sbjct: 167 KSKTSIKQLKERVAASEGG--------GKDEHL------QVDEKEKDETLKLRVSKRRTK 226

Query: 234 GRQLRIVAREARDRARARARQRTLLK 258
             +     +E+R+RAR RAR+RT+ K
Sbjct: 227 TMESSFKTKESRERARKRARERTMAK 233

[Close]
BLAST of Lsi09G006020 vs. Swiss-Prot
Match: CYCLD_ANTMH (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum GN=CYC PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-20
Identity = 74/186 (39.78%), Postives = 104/186 (55.91%), Query Frame = 1 

Query: 117 TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 176
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 74  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 133

Query: 177 IKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQDQEQEQEEAGGFTGSFKDKKGRQLR 236
           +K+L Q    + S  S+ S       E+VS  +    +  + ++       K+      +
Sbjct: 134 VKELVQ----SKSTKSNSSSPCDDCEEVVSVESENVTDHSKGKSLKANNKCKEAMDSH-Q 193

Query: 237 IVAREARDRARARARQRT-------------LLKN--------TSSILHPPINFDHHLSG 282
             A+E+R +ARARAR+RT             +L+N          + +HP   F     G
Sbjct: 194 AAAKESRAKARARARERTKEKMCIKQLNEAIVLRNHQFEVSGTREAFVHPVFGFHQQNYG 253

[Close]
BLAST of Lsi09G006020 vs. Swiss-Prot
Match: DICH_ANTMA (Transcription factor DICHOTOMA OS=Antirrhinum majus GN=DICH PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.5e-20
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = 1 

Query: 118 KRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAI 177
           K   KKDRHSKI   QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S  AI
Sbjct: 83  KHTPKKDRHSKINRPQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKEAI 142

Query: 178 KDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQDQE---QEQEEAGGFTGSFKDKKGRQ 237
           K+L Q+  S ++        S   SE   E+ + D       + +A     S K K GR 
Sbjct: 143 KELVQSKSSKSN-------ISNSPSECDQEVLSADLPYIGSSKGKAAVGLNSNKCKGGRD 202

Query: 238 LRIVAREARDRARARARQRT 255
              +A+E+R +ARARAR+RT
Sbjct: 203 AVDLAKESRAKARARARERT 215

[Close]
BLAST of Lsi09G006020 vs. TrEMBL
Match: A0A0A0KRR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577450 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 9.2e-89
Identity = 217/313 (69.33%), Postives = 236/313 (75.40%), Query Frame = 1 

Query: 37  QQQH-EDQFIINSYDDL---HFPHPFLDDDDVFLSHFLSQQQQLFEEEKHDGVDETTTTR 96
           QQQH EDQ +INSYDD    +FPHPFLDDDD+FLSHFLSQQQQ F E++   +DE     
Sbjct: 6   QQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFF-EQRDQQLDE----- 65

Query: 97  KTTTTTTKKKKKVCG--NYRKNGRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKF 156
             TT   KKKKK+CG  + RKNG + TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKF
Sbjct: 66  --TTKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKF 125

Query: 157 FDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINN 216
           FDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQ YF   S        SGQSSE+VSEIN+
Sbjct: 126 FDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSN-------SGQSSEVVSEIND 185

Query: 217 QD-----------QEQEQEEAGGFTGSFKDK-KGRQLRIVAREARDRARARARQRTLLKN 276
            +           QEQ+QE+   FTG FKDK K R LR VAREARDRARARARQRTLLKN
Sbjct: 186 NNGVFNVAASNLYQEQDQEDV-AFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKN 245

Query: 277 TSSILHPPI------NFDHHLSGN-------NNNNNTYLD-YPTFSCPN-SIFLPSPLPL 317
           T  + +PPI      +FD HLSGN       NNNNNTYLD YPTFSCP+ SIFLPSPLPL
Sbjct: 246 T-LLPNPPITSSISQHFD-HLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPL 300

[Close]
BLAST of Lsi09G006020 vs. TrEMBL
Match: A0A061EB69_THECC (TCP domain protein 12, putative OS=Theobroma cacao GN=TCM_011874 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 108/221 (48.87%), Postives = 128/221 (57.92%), Query Frame = 1 

Query: 53  HFPHPFLDDDD--VFLSHFLSQ-QQQLFEEEKH----DGVDETTTTRKTTTTTTKKKKKV 112
           H P PF+DDDD  + +SH LSQ QQQ+     +    D      +  K T   T K+K+ 
Sbjct: 43  HLPAPFIDDDDDGLLMSHLLSQAQQQIVGSSSNVAPPDSEINAASPMKETKKVTTKRKRS 102

Query: 113 CGNYRKNGRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKT 172
            GN  K G    KR GKKDRHSKIYTA GPRDRRMRLSLQIARKFFDLQDMLGFDKASKT
Sbjct: 103 AGNGAKQGIP-RKRTGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKT 162

Query: 173 IEWLLLNSNSAIKDLKQTYFSNNSGVSHG--SVYSGQSSEIVSEINNQDQEQ-------- 232
           IEWL   S +AIK+L   +       S G  SV S   SE+VS     +           
Sbjct: 163 IEWLFSKSKAAIKELTDNFPGVKHSCSGGGKSVSSTSESEVVSAAKEYEDNMGDLQGVIA 222

Query: 233 EQEEAGGFTGSFKDKKGRQLRI--VAREARDRARARARQRT 255
             E       + K++K R+     VARE+RD+ARARAR+RT
Sbjct: 223 RGESMRSTARATKERKSRKASFNPVARESRDKARARARERT 262

[Close]
BLAST of Lsi09G006020 vs. TrEMBL
Match: L0B9K3_POPAL (TCP transcription factor (Fragment) OS=Populus alba GN=TB2 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 108/227 (47.58%), Postives = 132/227 (58.15%), Query Frame = 1 

Query: 53  HFPHPFLDDDDVFLSHFLSQQQQL-------FEEEKHDGVDETTTTRKTTTTTTKKKK-- 112
           HFP  FLDDDD+ +   LSQQQQL       F    HD   ET       +     +K  
Sbjct: 26  HFPDLFLDDDDLLVGELLSQQQQLQQQQPGVFGSNTHDLAVETQEINPVASNDESTRKFN 85

Query: 113 --KVCGNYRKNGRSCTKRR-GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFD 172
             K+ GN   + +   +RR GKKDRHSKI+TAQGPRDRRMRLSLQIARKFFDLQDMLGFD
Sbjct: 86  NSKMKGNVNTSKQPIRQRRTGKKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFD 145

Query: 173 KASKTIEWLLLNSNSAIKDLKQTY--FSNNSGVSHG-SVYSGQSSEIVSEIN-----NQD 232
           KASKTIEWL   S +AIK+L  T       S  S G SV S   SE+VS I      N D
Sbjct: 146 KASKTIEWLFTKSKAAIKELTDTVPKVRKCSSTSAGKSVSSTSESEVVSGIKLTPDINGD 205

Query: 233 QEQEQEEAGGFTGSFKDKKGRQL-----RIVAREARDRARARARQRT 255
           +   + ++       K+K+ +++       V RE+R++ARARAR RT
Sbjct: 206 RRVMEAKSDSLVSKHKEKRSKKVHKPVFNPVDRESREKARARARDRT 252

[Close]
BLAST of Lsi09G006020 vs. TrEMBL
Match: B9SEI1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0705020 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.7e-30
Identity = 121/317 (38.17%), Postives = 163/317 (51.42%), Query Frame = 1 

Query: 9   MFGCNNNITEINQIVLDHLNPSISSSMYQQQHEDQFIINSYDD-----LHFP-HPFLDDD 68
           M+  +N+ T      L + N +  S+ +   +++   I  Y       L+FP   FLDD 
Sbjct: 1   MYSSSNSFTN----PLPYTNQTTVSTSFFDTYQNPSSIQDYPSSSPPFLNFPVSTFLDDG 60

Query: 69  DVFLSHFLSQQQQLF----------EEEKHDGVDETTTTRKTTTTTTKKKKKVCGNYRKN 128
           D+ LS F++QQQQ            E    +       ++K TT T KK K+        
Sbjct: 61  DLLLSDFVTQQQQQILGFNDISLAAETNSQENHMNLAASKKATTRTNKKIKRSSSTASSQ 120

Query: 129 GRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLN 188
                KR GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTI+WL   
Sbjct: 121 QPISRKRSGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFTK 180

Query: 189 SNSAIKDLKQTY----FSNNSGVSHGSVYSGQSSEIVSEI-----NNQDQEQEQEEAGGF 248
           S +AIK+L  +Y     S++S  S  SV S   SE++S       +N D+     E   F
Sbjct: 181 SKAAIKELTDSYPKVKRSSDSDGSSRSVSSTSESEVMSGTKLTTEDNGDKRGMGTEGDSF 240

Query: 249 TGSFKDKKGRQ-------LRIVAREARDRARARARQRTLLKNTSSILHPPINFDHHLSGN 294
               + K+            ++ARE+RD+ARARAR+RT  K    + H  ++   H    
Sbjct: 241 VRQQRCKESNNNKPNKPVFNLLARESRDKARARARERTKEK----LKHRCLDKSKHCCSQ 300

[Close]
BLAST of Lsi09G006020 vs. TrEMBL
Match: V4VET5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033382mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 115/257 (44.75%), Postives = 148/257 (57.59%), Query Frame = 1 

Query: 20  NQIVLDHLNPSISSSMYQQQHEDQFIINSYDDLHFPHPFLD--DDDVFLSHFLSQQQQLF 79
           NQ +L   N + SSS +  Q        +  D     PFL   D++ F++HF SQ Q L 
Sbjct: 18  NQSILATENENPSSSQHHHQPSPFLDFPADQD----QPFLPNHDNEFFMTHFFSQHQILG 77

Query: 80  EEEKHDGVDET-----TTTRKTTTTTTKKKKKVCGNYRKNGRSCTKRR-GKKDRHSKIYT 139
               +   DET     +    T  TTTKKKK    N  +  ++  ++R GKKDRHSKIYT
Sbjct: 78  CSSDNVAADETEIKMASPVEATKKTTTKKKKNGGVNGDEKAQAVQRKRTGKKDRHSKIYT 137

Query: 140 AQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQTYFSNNSGV 199
           AQGPRDRRMRLSLQIARKFFDLQD LGFDKASKTIEWLL  S +AIK+L ++  S  +  
Sbjct: 138 AQGPRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLLSKSKAAIKELTESLPSVKNSC 197

Query: 200 SHG--SVYSGQSSEIVSEINNQDQEQEQEEA-----GGFT---GSFKDKKGRQL-RIVAR 258
           + G  S+ S   SE+VS I       +Q+ A        T   G+  +K  + +   + R
Sbjct: 198 TSGAKSLSSTSESEVVSGIKRIKDTGDQKSALVVDDSSVTLSRGAMNNKSRKAVTNPIVR 257

[Close]
BLAST of Lsi09G006020 vs. TAIR10
Match: AT1G68800.1 (AT1G68800.1 TCP domain protein 12)

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-22
Identity = 84/206 (40.78%), Postives = 110/206 (53.40%), Query Frame = 1 

Query: 54  FPHPFLD--DDDVFLSHFLSQQQQLFEEEKHDGVDETTTTRKTTTTTTKKKKKVCGNYRK 113
           F   FL+  D+   ++ FL QQQ +        V E+           KK +K       
Sbjct: 47  FSSDFLESFDESFLINQFLLQQQDVAAN-----VVESPWKFCKKLELKKKNEKCVDGSTS 106

Query: 114 NGRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLL 173
                 +   K+DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWL  
Sbjct: 107 QEVQWRRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFS 166

Query: 174 NSNSAIKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQDQEQEQEEAGGFTGSFKDKK 233
            S ++IK LK+   ++  G        G+   +      Q  E+E++E      S +  K
Sbjct: 167 KSKTSIKQLKERVAASEGG--------GKDEHL------QVDEKEKDETLKLRVSKRRTK 226

Query: 234 GRQLRIVAREARDRARARARQRTLLK 258
             +     +E+R+RAR RAR+RT+ K
Sbjct: 227 TMESSFKTKESRERARKRARERTMAK 233

[Close]
BLAST of Lsi09G006020 vs. TAIR10
Match: AT1G67260.1 (AT1G67260.1 TCP family transcription factor )

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-18
Identity = 63/148 (42.57%), Postives = 85/148 (57.43%), Query Frame = 1 

Query: 118 KRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAI 177
           K+  KKDRHSKI TAQG RDRR+RLS+ IAR+FFDLQDMLGFDKASKT++WLL  S  AI
Sbjct: 83  KKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAI 142

Query: 178 KDLKQTYFSNNSGVSHGSVYSG-QSSEIVSEINNQDQE----------QEQEEAGGFTGS 237
           K++ Q    NN     G++    +  E   E +N D+           +E+         
Sbjct: 143 KEVVQAKNLNNDDEDFGNIGGDVEQEEEKEEDDNGDKSFVYGLSPGYGEEEVVCEATKAG 202

Query: 238 FKDKKGRQLRIVAREARDRARARARQRT 255
            + KK     I ++    +AR +A++RT
Sbjct: 203 IRKKKSELRNISSKGLGAKARGKAKERT 230

[Close]
BLAST of Lsi09G006020 vs. TAIR10
Match: AT1G53230.1 (AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-15
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 113 GRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLN 172
           G    +  G+KDRHSK+ TA+GPRDRR+RLS   A +F+D+QD LGFD+ SK ++WL+  
Sbjct: 40  GGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITK 99

Query: 173 SNSAIKDLKQ 183
           + SAI DL Q
Sbjct: 100 AKSAIDDLAQ 109

[Close]
BLAST of Lsi09G006020 vs. TAIR10
Match: AT3G15030.1 (AT3G15030.1 TCP family transcription factor 4)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-13
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 113 GRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLN 172
           G    +  G+KDRHSK+ TA+GPRDRR+RLS   A +F+D+QD LGFD+ SK ++WL+  
Sbjct: 36  GGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKK 95

Query: 173 SNSAIKDLKQ 183
           + ++I +L +
Sbjct: 96  AKTSIDELAE 105

[Close]
BLAST of Lsi09G006020 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-13
Identity = 59/186 (31.72%), Postives = 92/186 (49.46%), Query Frame = 1 

Query: 117 TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLL---NS 176
           ++  G KDRHSK+ T++GPRDRR+RLS+  A +F+DLQD LG+D+ SK +EWL+    +S
Sbjct: 37  SRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDS 96

Query: 177 NSAIKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQDQEQEQEEAGGFTGSFKDKKGR 236
            S +  L  T+F  +         +  ++  +S+          + + G           
Sbjct: 97  ISELPSLNNTHFPTDDENHQNQTLTTVAANSLSKSACSSNSDTSKNSSG----------- 156

Query: 237 QLRIVAREARDRARARARQRTLLKNTSSILHPPINFDHHLSGNN---NNNNTYLDYPTFS 296
            L +   E RD+AR RAR+RT  K T    H   +F   L+  +   N+N  ++     S
Sbjct: 157 -LSLSRSELRDKARERARERT-AKETKERDHNHTSFTDLLNSGSDPVNSNRQWMASAPSS 209

[Close]
BLAST of Lsi09G006020 vs. NCBI nr
Match: gi|778708622|ref|XP_011656248.1| (PREDICTED: transcription factor TCP12 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 1.3e-88
Identity = 217/313 (69.33%), Postives = 236/313 (75.40%), Query Frame = 1 

Query: 37  QQQH-EDQFIINSYDDL---HFPHPFLDDDDVFLSHFLSQQQQLFEEEKHDGVDETTTTR 96
           QQQH EDQ +INSYDD    +FPHPFLDDDD+FLSHFLSQQQQ F E++   +DE     
Sbjct: 6   QQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFF-EQRDQQLDE----- 65

Query: 97  KTTTTTTKKKKKVCG--NYRKNGRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKF 156
             TT   KKKKK+CG  + RKNG + TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKF
Sbjct: 66  --TTKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKF 125

Query: 157 FDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQTYFSNNSGVSHGSVYSGQSSEIVSEINN 216
           FDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQ YF   S        SGQSSE+VSEIN+
Sbjct: 126 FDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSN-------SGQSSEVVSEIND 185

Query: 217 QD-----------QEQEQEEAGGFTGSFKDK-KGRQLRIVAREARDRARARARQRTLLKN 276
            +           QEQ+QE+   FTG FKDK K R LR VAREARDRARARARQRTLLKN
Sbjct: 186 NNGVFNVAASNLYQEQDQEDV-AFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKN 245

Query: 277 TSSILHPPI------NFDHHLSGN-------NNNNNTYLD-YPTFSCPN-SIFLPSPLPL 317
           T  + +PPI      +FD HLSGN       NNNNNTYLD YPTFSCP+ SIFLPSPLPL
Sbjct: 246 T-LLPNPPITSSISQHFD-HLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPL 300

[Close]
BLAST of Lsi09G006020 vs. NCBI nr
Match: gi|659074615|ref|XP_008437699.1| (PREDICTED: transcription factor CYCLOIDEA [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 2.0e-44
Identity = 118/171 (69.01%), Postives = 128/171 (74.85%), Query Frame = 1 

Query: 120 RGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKD 179
           +GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKD
Sbjct: 55  QGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKD 114

Query: 180 LKQTYFSNNSGVSHGSVYSGQSSEIVSEINNQ------------DQEQEQEEAGGFTGSF 239
           LKQ YF   S        SGQSSE+VSEIN+             DQ+Q+QE+   FTG F
Sbjct: 115 LKQAYFFKYSN-------SGQSSEVVSEINDNNGVVNVAASNHLDQQQDQEDV-AFTGGF 174

Query: 240 KDK-KGRQLRIVAREARDRARARARQRTLLKNTSSILHPPI------NFDH 272
           KDK K R LR  +REARDRARARARQRTLLKNT  + +PPI      +FDH
Sbjct: 175 KDKIKSRTLRTGSREARDRARARARQRTLLKNT-LLPNPPITSSISQHFDH 216

[Close]
BLAST of Lsi09G006020 vs. NCBI nr
Match: gi|590701110|ref|XP_007046319.1| (TCP domain protein 12, putative [Theobroma cacao])

HSP 1 Score: 144.4 bits (363), Expect = 3.3e-31
Identity = 108/221 (48.87%), Postives = 128/221 (57.92%), Query Frame = 1 

Query: 53  HFPHPFLDDDD--VFLSHFLSQ-QQQLFEEEKH----DGVDETTTTRKTTTTTTKKKKKV 112
           H P PF+DDDD  + +SH LSQ QQQ+     +    D      +  K T   T K+K+ 
Sbjct: 43  HLPAPFIDDDDDGLLMSHLLSQAQQQIVGSSSNVAPPDSEINAASPMKETKKVTTKRKRS 102

Query: 113 CGNYRKNGRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKT 172
            GN  K G    KR GKKDRHSKIYTA GPRDRRMRLSLQIARKFFDLQDMLGFDKASKT
Sbjct: 103 AGNGAKQGIP-RKRTGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKT 162

Query: 173 IEWLLLNSNSAIKDLKQTYFSNNSGVSHG--SVYSGQSSEIVSEINNQDQEQ-------- 232
           IEWL   S +AIK+L   +       S G  SV S   SE+VS     +           
Sbjct: 163 IEWLFSKSKAAIKELTDNFPGVKHSCSGGGKSVSSTSESEVVSAAKEYEDNMGDLQGVIA 222

Query: 233 EQEEAGGFTGSFKDKKGRQLRI--VAREARDRARARARQRT 255
             E       + K++K R+     VARE+RD+ARARAR+RT
Sbjct: 223 RGESMRSTARATKERKSRKASFNPVARESRDKARARARERT 262

[Close]
BLAST of Lsi09G006020 vs. NCBI nr
Match: gi|429345861|gb|AFZ84612.1| (TCP transcription factor, partial [Populus alba])

HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 108/227 (47.58%), Postives = 132/227 (58.15%), Query Frame = 1 

Query: 53  HFPHPFLDDDDVFLSHFLSQQQQL-------FEEEKHDGVDETTTTRKTTTTTTKKKK-- 112
           HFP  FLDDDD+ +   LSQQQQL       F    HD   ET       +     +K  
Sbjct: 26  HFPDLFLDDDDLLVGELLSQQQQLQQQQPGVFGSNTHDLAVETQEINPVASNDESTRKFN 85

Query: 113 --KVCGNYRKNGRSCTKRR-GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFD 172
             K+ GN   + +   +RR GKKDRHSKI+TAQGPRDRRMRLSLQIARKFFDLQDMLGFD
Sbjct: 86  NSKMKGNVNTSKQPIRQRRTGKKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFD 145

Query: 173 KASKTIEWLLLNSNSAIKDLKQTY--FSNNSGVSHG-SVYSGQSSEIVSEIN-----NQD 232
           KASKTIEWL   S +AIK+L  T       S  S G SV S   SE+VS I      N D
Sbjct: 146 KASKTIEWLFTKSKAAIKELTDTVPKVRKCSSTSAGKSVSSTSESEVVSGIKLTPDINGD 205

Query: 233 QEQEQEEAGGFTGSFKDKKGRQL-----RIVAREARDRARARARQRT 255
           +   + ++       K+K+ +++       V RE+R++ARARAR RT
Sbjct: 206 RRVMEAKSDSLVSKHKEKRSKKVHKPVFNPVDRESREKARARARDRT 252

[Close]
BLAST of Lsi09G006020 vs. NCBI nr
Match: gi|223536361|gb|EEF38011.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 121/317 (38.17%), Postives = 163/317 (51.42%), Query Frame = 1 

Query: 9   MFGCNNNITEINQIVLDHLNPSISSSMYQQQHEDQFIINSYDD-----LHFP-HPFLDDD 68
           M+  +N+ T      L + N +  S+ +   +++   I  Y       L+FP   FLDD 
Sbjct: 1   MYSSSNSFTN----PLPYTNQTTVSTSFFDTYQNPSSIQDYPSSSPPFLNFPVSTFLDDG 60

Query: 69  DVFLSHFLSQQQQLF----------EEEKHDGVDETTTTRKTTTTTTKKKKKVCGNYRKN 128
           D+ LS F++QQQQ            E    +       ++K TT T KK K+        
Sbjct: 61  DLLLSDFVTQQQQQILGFNDISLAAETNSQENHMNLAASKKATTRTNKKIKRSSSTASSQ 120

Query: 129 GRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLN 188
                KR GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTI+WL   
Sbjct: 121 QPISRKRSGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFTK 180

Query: 189 SNSAIKDLKQTY----FSNNSGVSHGSVYSGQSSEIVSEI-----NNQDQEQEQEEAGGF 248
           S +AIK+L  +Y     S++S  S  SV S   SE++S       +N D+     E   F
Sbjct: 181 SKAAIKELTDSYPKVKRSSDSDGSSRSVSSTSESEVMSGTKLTTEDNGDKRGMGTEGDSF 240

Query: 249 TGSFKDKKGRQ-------LRIVAREARDRARARARQRTLLKNTSSILHPPINFDHHLSGN 294
               + K+            ++ARE+RD+ARARAR+RT  K    + H  ++   H    
Sbjct: 241 VRQQRCKESNNNKPNKPVFNLLARESRDKARARARERTKEK----LKHRCLDKSKHCCSQ 300

The following BLAST results are available for this feature:
BLAST of Lsi09G006020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYCLD_ANTMA2.4e-2146.54Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1[more]
CYCLD_ANTML6.9e-2141.27Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum ... [more]
TCP12_ARATH9.0e-2140.78Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1[more]
CYCLD_ANTMH2.6e-2039.78Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigeru... [more]
DICH_ANTMA4.5e-2049.29Transcription factor DICHOTOMA OS=Antirrhinum majus GN=DICH PE=2 SV=1[more]
BLAST of Lsi09G006020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRR2_CUCSA9.2e-8969.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577450 PE=4 SV=1[more]
A0A061EB69_THECC2.3e-3148.87TCP domain protein 12, putative OS=Theobroma cacao GN=TCM_011874 PE=4 SV=1[more]
L0B9K3_POPAL1.9e-3047.58TCP transcription factor (Fragment) OS=Populus alba GN=TB2 PE=4 SV=1[more]
B9SEI1_RICCO9.7e-3038.17Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0705020 PE=4 SV=1[more]
V4VET5_9ROSI1.6e-2944.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033382mg PE=4 SV=1[more]
BLAST of Lsi09G006020 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68800.15.1e-2240.78 TCP domain protein 12[more]
AT1G67260.11.5e-1842.57 TCP family transcription factor [more]
AT1G53230.13.5e-1554.29 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3[more]
AT3G15030.11.1e-1348.57 TCP family transcription factor 4[more]
AT4G18390.13.3e-1331.72 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2[more]
BLAST of Lsi09G006020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708622|ref|XP_011656248.1|1.3e-8869.33PREDICTED: transcription factor TCP12 [Cucumis sativus][more]
gi|659074615|ref|XP_008437699.1|2.0e-4469.01PREDICTED: transcription factor CYCLOIDEA [Cucumis melo][more]
gi|590701110|ref|XP_007046319.1|3.3e-3148.87TCP domain protein 12, putative [Theobroma cacao][more]
gi|429345861|gb|AFZ84612.1|2.8e-3047.58TCP transcription factor, partial [Populus alba][more]
gi|223536361|gb|EEF38011.1|1.4e-2938.17conserved hypothetical protein [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017887TF_TCP_subgr
IPR005333Transcription_factor_TCP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000032 regulation of secondary shoot formation
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G006020.1Lsi09G006020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005333Transcription factor, TCPPFAMPF03634TCPcoord: 121..258
score: 2.3
IPR017887Transcription factor TCP subgroupPROFILEPS51369TCPcoord: 122..180
score: 35
NoneNo IPR availablePANTHERPTHR31072FAMILY NOT NAMEDcoord: 38..254
score: 2.9
NoneNo IPR availablePANTHERPTHR31072:SF22TRANSCRIPTION FACTOR TCP12coord: 38..254
score: 2.9