Cucsa.280880 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.280880
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	CYCLOIDEA-like TCP transcription factor
Location	scaffold02633 : 823703 .. 824450 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATCATCAACAACAACAACATCAAGAGGATCAAATCCTCATCAACTCATATGATGATCATGATTTTCATTATTTCCCACATCCTTTTCTTGATGACGACGACCTATTTTTAAGCCATTTTCTATCACAACAACAACAATTCTTCGAACAACGAGATCAGCAACTTGACGAAACGACGAAAAAGATGAAGAAGAAGAAGAAATTGTGTGGAAGTAGTAGTAGTAGAAAAAATGGGAGCAACTCTACAAAGAGAAGAGGGAAGAAGGATAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTTGATCTTCAAGACATGCTAGGCTTTGACAAAGCTAGTAAAACTATAGAGTGGCTTCTTCTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAGCCTACTTCTTTAAGTACTCAAATTCTGGCCAATCAAGTGAGGTTGTGTCAGAGATTAATGATAACAATGGTGTTTTTAATGTTGCTGCTTCTAATCTATATCAAGAACAAGATCAAGAAGATGTTGCGTTTACGGGCGGTTTTAAAGACAAGATCAAAAGCAGGACGTTACGAACCGTTGCGAGAGAGGCGAGGGATAGGGCGAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTTACTACCAAACCCTCCTATTACTTCTTCCATTTCTCAACATTTTGATCATCTCTCAG

mRNA sequence

ATGGATGATCATCAACAACAACAACATCAAGAGGATCAAATCCTCATCAACTCATATGATGATCATGATTTTCATTATTTCCCACATCCTTTTCTTGATGACGACGACCTATTTTTAAGCCATTTTCTATCACAACAACAACAATTCTTCGAACAACGAGATCAGCAACTTGACGAAACGACGAAAAAGATGAAGAAGAAGAAGAAATTGTGTGGAAGTAGTAGTAGTAGAAAAAATGGGAGCAACTCTACAAAGAGAAGAGGGAAGAAGGATAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTTGATCTTCAAGACATGCTAGGCTTTGACAAAGCTAGTAAAACTATAGAGTGGCTTCTTCTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAGCCTACTTCTTTAAGTACTCAAATTCTGGCCAATCAAGTGAGGTTGTGTCAGAGATTAATGATAACAATGGTGTTTTTAATGTTGCTGCTTCTAATCTATATCAAGAACAAGATCAAGAAGATGTTGCGTTTACGGGCGGTTTTAAAGACAAGATCAAAAGCAGGACGTTACGAACCGTTGCGAGAGAGGCGAGGGATAGGGCGAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTTACTACCAAACCCTCCTATTACTTCTTCCATTTCTCAACATTTTGATCATCTCTCAG

Coding sequence (CDS)

ATGGATGATCATCAACAACAACAACATCAAGAGGATCAAATCCTCATCAACTCATATGATGATCATGATTTTCATTATTTCCCACATCCTTTTCTTGATGACGACGACCTATTTTTAAGCCATTTTCTATCACAACAACAACAATTCTTCGAACAACGAGATCAGCAACTTGACGAAACGACGAAAAAGATGAAGAAGAAGAAGAAATTGTGTGGAAGTAGTAGTAGTAGAAAAAATGGGAGCAACTCTACAAAGAGAAGAGGGAAGAAGGATAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTTGATCTTCAAGACATGCTAGGCTTTGACAAAGCTAGTAAAACTATAGAGTGGCTTCTTCTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAGCCTACTTCTTTAAGTACTCAAATTCTGGCCAATCAAGTGAGGTTGTGTCAGAGATTAATGATAACAATGGTGTTTTTAATGTTGCTGCTTCTAATCTATATCAAGAACAAGATCAAGAAGATGTTGCGTTTACGGGCGGTTTTAAAGACAAGATCAAAAGCAGGACGTTACGAACCGTTGCGAGAGAGGCGAGGGATAGGGCGAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTTACTACCAAACCCTCCTATTACTTCTTCCATTTCTCAACATTTTGATCATCTCTCAG

Protein sequence

MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDETTKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSSISQHFDHLSX

Homology

[Close]

BLAST of Cucsa.280880 vs. Swiss-Prot
Match: TCP12_ARATH (Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 89/220 (40.45%), Postives = 119/220 (54.09%), Query Frame = 1


Query: 17  NSYDDHDFHYFPHP--FLD--DDDLFLSHFLSQQQQFFEQRDQQLDETTKKMKKKKK--- 76
           NS+  +    FP    FL+  D+   ++ FL QQQ       +   +  KK++ KKK   
Sbjct: 35  NSHHHYSSPSFPFSSDFLESFDESFLINQFLLQQQDVAANVVESPWKFCKKLELKKKNEK 94

Query: 77  -LCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 136
            + GS+S       + K+R   DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDK
Sbjct: 95  CVDGSTSQEVQWRRTVKKR---DRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 154

Query: 137 ASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQ 196
           ASKTIEWL   S ++IK LK+      S  G   E +                   E+++
Sbjct: 155 ASKTIEWLFSKSKTSIKQLKER--VAASEGGGKDEHLQ----------------VDEKEK 214

Query: 197 EDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLK 229
           ++       K + K+       +E+R+RAR RAR+RT+ K
Sbjct: 215 DETLKLRVSKRRTKTMESSFKTKESRERARKRARERTMAK 233

[Close]

BLAST of Cucsa.280880 vs. Swiss-Prot
Match: CYCLD_ANTMA (Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-26
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 1


Query: 84  TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 143
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 82  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 141

Query: 144 IKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKS 203
           IK+L Q+   K ++S       S  +D   V +V + N+      + +      K+ + S
Sbjct: 142 IKELVQSKSTKSNSS-------SPCDDCEEVVSVDSENVTDHSKGKSLKANNKCKEAMDS 201

Query: 204 RTLRTVAREARDRARARARQRT 226
              +  A+E+R +ARARAR+RT
Sbjct: 202 H--QAAAKESRAKARARARERT 214

[Close]

BLAST of Cucsa.280880 vs. Swiss-Prot
Match: CYCLD_ANTML (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-26
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 1


Query: 84  TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 143
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 74  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 133

Query: 144 IKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKS 203
           IK+L Q+   K ++S       S  +D   V +V + N+      + +      K+ + S
Sbjct: 134 IKELVQSKSTKSNSS-------SPCDDCEEVVSVDSENVTDHSKGKSLKANNKCKEAMDS 193

Query: 204 RTLRTVAREARDRARARARQRT 226
              +  A+E+R +ARARAR+RT
Sbjct: 194 H--QAAAKESRAKARARARERT 206

[Close]

BLAST of Cucsa.280880 vs. Swiss-Prot
Match: CYCLD_ANTMH (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum GN=CYC PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-26
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1


Query: 84  TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 143
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 74  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 133

Query: 144 IKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKS 203
           +K+L Q+   K ++S       S  +D   V +V + N+      + +      K+ + S
Sbjct: 134 VKELVQSKSTKSNSS-------SPCDDCEEVVSVESENVTDHSKGKSLKANNKCKEAMDS 193

Query: 204 RTLRTVAREARDRARARARQRT 226
              +  A+E+R +ARARAR+RT
Sbjct: 194 H--QAAAKESRAKARARARERT 206

[Close]

BLAST of Cucsa.280880 vs. Swiss-Prot
Match: DICH_ANTMA (Transcription factor DICHOTOMA OS=Antirrhinum majus GN=DICH PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-23
Identity = 69/142 (48.59%), Postives = 87/142 (61.27%), Query Frame = 1


Query: 85  KRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAI 144
           K   KKDRHSKI   QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S  AI
Sbjct: 83  KHTPKKDRHSKINRPQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKEAI 142

Query: 145 KDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIK-S 204
           K+L Q+   K + S   SE   E         V +++L      +  A  G   +K K  
Sbjct: 143 KELVQSKSSKSNISNSPSECDQE---------VLSADLPYIGSSKGKAAVGLNSNKCKGG 202

Query: 205 RTLRTVAREARDRARARARQRT 226
           R    +A+E+R +ARARAR+RT
Sbjct: 203 RDAVDLAKESRAKARARARERT 215

[Close]

BLAST of Cucsa.280880 vs. TrEMBL
Match: A0A0A0KRR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577450 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 3.4e-139
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1


Query: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60
           MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET
Sbjct: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60

Query: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120
           TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL
Sbjct: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120

Query: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180
           QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS
Sbjct: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180

Query: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240
           NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS
Sbjct: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240

Query: 241 ISQHFDHLS 250
           ISQHFDHLS
Sbjct: 241 ISQHFDHLS 249

[Close]

BLAST of Cucsa.280880 vs. TrEMBL
Match: A0A061EB69_THECC (TCP domain protein 12, putative OS=Theobroma cacao GN=TCM_011874 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 109/228 (47.81%), Postives = 129/228 (56.58%), Query Frame = 1


Query: 24  FHYFPHPFLDDDD--LFLSHFLSQQQQFF-------EQRDQQLDETTKKMKKKKKLCGSS 83
           F + P PF+DDDD  L +SH LSQ QQ            D +++  +   + KK      
Sbjct: 41  FWHLPAPFIDDDDDGLLMSHLLSQAQQQIVGSSSNVAPPDSEINAASPMKETKKVTTKRK 100

Query: 84  SSRKNGSNS---TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASK 143
            S  NG+      KR GKKDRHSKIYTA GPRDRRMRLSLQIARKFFDLQDMLGFDKASK
Sbjct: 101 RSAGNGAKQGIPRKRTGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASK 160

Query: 144 TIEWLLLNSNSAIKDLKQAY-FFKYSNSG--------QSSEVVS---EINDNNGVFNVAA 203
           TIEWL   S +AIK+L   +   K+S SG          SEVVS   E  DN G      
Sbjct: 161 TIEWLFSKSKAAIKELTDNFPGVKHSCSGGGKSVSSTSESEVVSAAKEYEDNMGDLQGVI 220

Query: 204 SNLYQEQDQEDVAFTGGFKDKIKSR--TLRTVAREARDRARARARQRT 226
           +        E +  T     + KSR  +   VARE+RD+ARARAR+RT
Sbjct: 221 AR------GESMRSTARATKERKSRKASFNPVARESRDKARARARERT 262

[Close]

BLAST of Cucsa.280880 vs. TrEMBL
Match: V4VET5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033382mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-35
Identity = 106/238 (44.54%), Postives = 128/238 (53.78%), Query Frame = 1


Query: 25  HYFPHPFLD-------------DDDLFLSHFLSQQQQFFEQRDQ-QLDETTKKMK----- 84
           H+ P PFLD             D++ F++HF SQ Q      D    DET  KM      
Sbjct: 35  HHQPSPFLDFPADQDQPFLPNHDNEFFMTHFFSQHQILGCSSDNVAADETEIKMASPVEA 94

Query: 85  ------KKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD 144
                 KKKK  G +   K  +   KR GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD
Sbjct: 95  TKKTTTKKKKNGGVNGDEKAQAVQRKRTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD 154

Query: 145 LQDMLGFDKASKTIEWLLLNSNSAIKDLKQAY---------FFKYSNSGQSSEVVSEIND 204
           LQD LGFDKASKTIEWLL  S +AIK+L ++            K  +S   SEVVS I  
Sbjct: 155 LQDTLGFDKASKTIEWLLSKSKAAIKELTESLPSVKNSCTSGAKSLSSTSESEVVSGIKR 214

Query: 205 NNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLK 229
                +  ++ +    D       G   +K +      + RE+RD+ARARAR+RTL K
Sbjct: 215 IKDTGDQKSALVV--DDSSVTLSRGAMNNKSRKAVTNPIVRESRDKARARARERTLEK 270

[Close]

BLAST of Cucsa.280880 vs. TrEMBL
Match: G3BGW4_SOLLC (TCP transcription factor 22 OS=Solanum lycopersicum GN=TCP22 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.9e-35
Identity = 106/240 (44.17%), Postives = 130/240 (54.17%), Query Frame = 1


Query: 9   HQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDETTKKMKKKK 68
           HQ         D+  F  FP PFLD ++  LS  L Q     E     L   T K +   
Sbjct: 27  HQNPSSSSRQEDNPFFLNFPSPFLDHNESPLSQILPQDHHVKEGNFTHLSSETSKEEMSI 86

Query: 69  KLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 128
           +   SS  R   +   +R GKKDRHSKI TAQG RDRR+RLSL IARKFFDLQDMLGFDK
Sbjct: 87  EAKPSSKKRSLSTTPRRRTGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDK 146

Query: 129 ASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQ 188
           ASKTIEWL   SN+AIKDL +    K  + G  +++V  IN NN       S+ +  + +
Sbjct: 147 ASKTIEWLFSKSNNAIKDLSENTPQKEYSDG--NKIV--INSNNSSSYEGKSDSFMSECE 206

Query: 189 EDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSSISQHFDHL 248
           E+     G KDK K        RE+R++ARARAR+RT  K  +  NP      S  FD L
Sbjct: 207 ENSINELG-KDKEKIMQNNPHKRESREKARARARERTKEKMMIKGNP------SNMFDQL 255

[Close]

BLAST of Cucsa.280880 vs. TrEMBL
Match: A0A0D2RHR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G186800 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 114/248 (45.97%), Postives = 134/248 (54.03%), Query Frame = 1


Query: 8   QHQEDQILINSYDDHD--FHYFPHPFLDDDD---LFLSHFLSQQQQFF-------EQRDQ 67
           QH  D    +S +DH   F  FP  F DDDD   L +SH LSQ QQ            D 
Sbjct: 27  QHPAD----SSLEDHPPPFFNFPASFFDDDDDDGLLMSHLLSQAQQQILGSSSNTAPPDS 86

Query: 68  QLDETTKKMKKKKKLCGSSSSRKNGSNS---TKRRGKKDRHSKIYTAQGPRDRRMRLSLQ 127
           +++      + KK       S  NG+      KR GKKDRHSKIYTA GPRDRRMRLSLQ
Sbjct: 87  EINAAPPIKETKKVPPNRKRSSSNGAKQGIPRKRTGKKDRHSKIYTAHGPRDRRMRLSLQ 146

Query: 128 IARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQ---AYFFKYSNSGQS------SE 187
           IARKFFDLQDMLGFDKASKTIEWL   S +AIK+L +   A   + S  G+S      SE
Sbjct: 147 IARKFFDLQDMLGFDKASKTIEWLFSKSKAAIKELTENLPALKHRCSEGGKSVSSTSESE 206

Query: 188 VVS---EINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTL---RTVAREARDRA 226
           VVS   E  DN G        +    +      T     + KSR +     VARE+RD+A
Sbjct: 207 VVSAAKECQDNMG----DQQGIIASGEAMRSTTTARVTKERKSRKVSFNHIVARESRDKA 266

[Close]

BLAST of Cucsa.280880 vs. TAIR10
Match: AT1G68800.1 (AT1G68800.1 TCP domain protein 12)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-29
Identity = 89/220 (40.45%), Postives = 119/220 (54.09%), Query Frame = 1


Query: 17  NSYDDHDFHYFPHP--FLD--DDDLFLSHFLSQQQQFFEQRDQQLDETTKKMKKKKK--- 76
           NS+  +    FP    FL+  D+   ++ FL QQQ       +   +  KK++ KKK   
Sbjct: 35  NSHHHYSSPSFPFSSDFLESFDESFLINQFLLQQQDVAANVVESPWKFCKKLELKKKNEK 94

Query: 77  -LCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 136
            + GS+S       + K+R   DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDK
Sbjct: 95  CVDGSTSQEVQWRRTVKKR---DRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 154

Query: 137 ASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQ 196
           ASKTIEWL   S ++IK LK+      S  G   E +                   E+++
Sbjct: 155 ASKTIEWLFSKSKTSIKQLKER--VAASEGGGKDEHLQ----------------VDEKEK 214

Query: 197 EDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLK 229
           ++       K + K+       +E+R+RAR RAR+RT+ K
Sbjct: 215 DETLKLRVSKRRTKTMESSFKTKESRERARKRARERTMAK 233

[Close]

BLAST of Cucsa.280880 vs. TAIR10
Match: AT1G67260.1 (AT1G67260.1 TCP family transcription factor )

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-23
Identity = 75/171 (43.86%), Postives = 96/171 (56.14%), Query Frame = 1


Query: 81  SNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNS 140
           S   K+  KKDRHSKI TAQG RDRR+RLS+ IAR+FFDLQDMLGFDKASKT++WLL  S
Sbjct: 79  SKEIKKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKS 138

Query: 141 NSAIKDLKQAYFFK-----YSNSGQSSEVVSE-INDNNG--VFNVAASNLYQEQDQEDVA 200
             AIK++ QA         + N G   E   E   D+NG   F    S  Y E++    A
Sbjct: 139 RKAIKEVVQAKNLNNDDEDFGNIGGDVEQEEEKEEDDNGDKSFVYGLSPGYGEEEVVCEA 198

Query: 201 FTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSSISQ 244
              G + K KS      ++    +AR +A++RT  +     NP   S I+Q
Sbjct: 199 TKAGIRKK-KSELRNISSKGLGAKARGKAKERT-KEMMAYDNPETASDITQ 247

[Close]

BLAST of Cucsa.280880 vs. TAIR10
Match: AT3G18550.1 (AT3G18550.1 TCP family transcription factor )

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-18
Identity = 61/172 (35.47%), Postives = 93/172 (54.07%), Query Frame = 1


Query: 74  SSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTI 133
           S+S+       K+  + DRHSKI TA+G RDRRMRLSL +A++ F LQDMLGFDKASKT+
Sbjct: 133 STSQDPKMKKAKKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTV 192

Query: 134 EWLLLNSNSAI----KDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAA--------SN 193
           EWLL  +   I      L     F   +      V+  ++ ++ +  +A+        SN
Sbjct: 193 EWLLTQAKPEIIKIATTLSHHGCFSSGDESHIRPVLGSMDTSSDLCELASMWTVDDRGSN 252

Query: 194 LYQEQ---DQEDVAFTGGFKDKIKSRT--LRTVAREARDRARARARQRTLLK 229
               +   ++ D     G + + + RT  L+ +++E R +AR RA+ RT+ K
Sbjct: 253 TNTTETRGNKVDGRSMRGKRKRPEPRTPILKKLSKEERAKARERAKGRTMEK 304

[Close]

BLAST of Cucsa.280880 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-17
Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 1


Query: 84  TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 143
           ++  G KDRHSK+ T++GPRDRR+RLS+  A +F+DLQD LG+D+ SK +EWL+  +  +
Sbjct: 37  SRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDS 96

Query: 144 IKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKS 203
           I +L        S +        E + N  +  VAA++L +       A +        S
Sbjct: 97  ISELP-------SLNNTHFPTDDENHQNQTLTTVAANSLSKS------ACSSNSDTSKNS 156

Query: 204 RTLRTVAREARDRARARARQRT 226
             L     E RD+AR RAR+RT
Sbjct: 157 SGLSLSRSELRDKARERARERT 165

[Close]

BLAST of Cucsa.280880 vs. TAIR10
Match: AT1G53230.1 (AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 80  GSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLN 139
           G +  +  G+KDRHSK+ TA+GPRDRR+RLS   A +F+D+QD LGFD+ SK ++WL+  
Sbjct: 40  GGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITK 99

Query: 140 SNSAIKDLKQ 150
           + SAI DL Q
Sbjct: 100 AKSAIDDLAQ 109

[Close]

BLAST of Cucsa.280880 vs. NCBI nr
Match: gi|778708622|ref|XP_011656248.1| (PREDICTED: transcription factor TCP12 [Cucumis sativus])

HSP 1 Score: 502.3 bits (1292), Expect = 4.9e-139
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1


Query: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60
           MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET
Sbjct: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60

Query: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120
           TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL
Sbjct: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120

Query: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180
           QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS
Sbjct: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180

Query: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240
           NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS
Sbjct: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240

Query: 241 ISQHFDHLS 250
           ISQHFDHLS
Sbjct: 241 ISQHFDHLS 249

[Close]

BLAST of Cucsa.280880 vs. NCBI nr
Match: gi|659074615|ref|XP_008437699.1| (PREDICTED: transcription factor CYCLOIDEA [Cucumis melo])

HSP 1 Score: 401.7 bits (1031), Expect = 9.1e-109
Identity = 209/250 (83.60%), Postives = 213/250 (85.20%), Query Frame = 1


Query: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60
           MDDHQQQQH+E+QILINSYDDHD HYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQ     
Sbjct: 1   MDDHQQQQHRENQILINSYDDHDLHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQ----- 60

Query: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120
                                      GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL
Sbjct: 61  ---------------------------GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120

Query: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180
           QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGV NVAAS
Sbjct: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVVNVAAS 180

Query: 181 N-LYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITS 240
           N L Q+QDQEDVAFTGGFKDKIKSRTLRT +REARDRARARARQRTLLKNTLLPNPPITS
Sbjct: 181 NHLDQQQDQEDVAFTGGFKDKIKSRTLRTGSREARDRARARARQRTLLKNTLLPNPPITS 218

Query: 241 SISQHFDHLS 250
           SISQHFDHLS
Sbjct: 241 SISQHFDHLS 218

[Close]

BLAST of Cucsa.280880 vs. NCBI nr
Match: gi|590701110|ref|XP_007046319.1| (TCP domain protein 12, putative [Theobroma cacao])

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 109/228 (47.81%), Postives = 129/228 (56.58%), Query Frame = 1


Query: 24  FHYFPHPFLDDDD--LFLSHFLSQQQQFF-------EQRDQQLDETTKKMKKKKKLCGSS 83
           F + P PF+DDDD  L +SH LSQ QQ            D +++  +   + KK      
Sbjct: 41  FWHLPAPFIDDDDDGLLMSHLLSQAQQQIVGSSSNVAPPDSEINAASPMKETKKVTTKRK 100

Query: 84  SSRKNGSNS---TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASK 143
            S  NG+      KR GKKDRHSKIYTA GPRDRRMRLSLQIARKFFDLQDMLGFDKASK
Sbjct: 101 RSAGNGAKQGIPRKRTGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASK 160

Query: 144 TIEWLLLNSNSAIKDLKQAY-FFKYSNSG--------QSSEVVS---EINDNNGVFNVAA 203
           TIEWL   S +AIK+L   +   K+S SG          SEVVS   E  DN G      
Sbjct: 161 TIEWLFSKSKAAIKELTDNFPGVKHSCSGGGKSVSSTSESEVVSAAKEYEDNMGDLQGVI 220

Query: 204 SNLYQEQDQEDVAFTGGFKDKIKSR--TLRTVAREARDRARARARQRT 226
           +        E +  T     + KSR  +   VARE+RD+ARARAR+RT
Sbjct: 221 AR------GESMRSTARATKERKSRKASFNPVARESRDKARARARERT 262

[Close]

BLAST of Cucsa.280880 vs. NCBI nr
Match: gi|567890447|ref|XP_006437744.1| (hypothetical protein CICLE_v10033382mg [Citrus clementina])

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 106/238 (44.54%), Postives = 128/238 (53.78%), Query Frame = 1


Query: 25  HYFPHPFLD-------------DDDLFLSHFLSQQQQFFEQRDQ-QLDETTKKMK----- 84
           H+ P PFLD             D++ F++HF SQ Q      D    DET  KM      
Sbjct: 35  HHQPSPFLDFPADQDQPFLPNHDNEFFMTHFFSQHQILGCSSDNVAADETEIKMASPVEA 94

Query: 85  ------KKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD 144
                 KKKK  G +   K  +   KR GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD
Sbjct: 95  TKKTTTKKKKNGGVNGDEKAQAVQRKRTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD 154

Query: 145 LQDMLGFDKASKTIEWLLLNSNSAIKDLKQAY---------FFKYSNSGQSSEVVSEIND 204
           LQD LGFDKASKTIEWLL  S +AIK+L ++            K  +S   SEVVS I  
Sbjct: 155 LQDTLGFDKASKTIEWLLSKSKAAIKELTESLPSVKNSCTSGAKSLSSTSESEVVSGIKR 214

Query: 205 NNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLK 229
                +  ++ +    D       G   +K +      + RE+RD+ARARAR+RTL K
Sbjct: 215 IKDTGDQKSALVV--DDSSVTLSRGAMNNKSRKAVTNPIVRESRDKARARARERTLEK 270

[Close]

BLAST of Cucsa.280880 vs. NCBI nr
Match: gi|568862198|ref|XP_006484572.1| (PREDICTED: transcription factor TCP12 [Citrus sinensis])

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 106/238 (44.54%), Postives = 129/238 (54.20%), Query Frame = 1


Query: 25  HYFPHPFLD-------------DDDLFLSHFLSQQQQFFEQRDQ-QLDETTKKMK----- 84
           H+ P PFLD             D++ F++HF SQ Q      D    DET  KM      
Sbjct: 35  HHQPSPFLDFPADQDQPFLPNHDNEFFMTHFFSQHQILGCSSDNVAADETEIKMASPVEA 94

Query: 85  ------KKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD 144
                 KKKK  G +   K  +   KR GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD
Sbjct: 95  TKKTTTKKKKNGGVNGDEKAQAVQRKRTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD 154

Query: 145 LQDMLGFDKASKTIEWLLLNSNSAIKDLKQAY---------FFKYSNSGQSSEVVSEIND 204
           LQD LGFDKASKTIEWLL  S +AIK+L ++            K  +S   SEVVS I  
Sbjct: 155 LQDTLGFDKASKTIEWLLSKSKAAIKELTESLPSVKNSCTSGAKSLSSTSESEVVSGIKR 214

Query: 205 NNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLK 229
                +  ++ +    D       G   +K +   +  + RE+RD+ARARAR+RTL K
Sbjct: 215 IKDTGDQKSALVV--DDSLVTLSRGAMNNKSRKAVINPIVRESRDKARARARERTLEK 270

The following BLAST results are available for this feature:

BLAST of Cucsa.280880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCP12_ARATH	2.1e-28	40.45	Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1	[more]
CYCLD_ANTMA	1.1e-26	48.59	Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1	[more]
CYCLD_ANTML	1.1e-26	48.59	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum ...	[more]
CYCLD_ANTMH	1.1e-26	47.89	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigeru...	[more]
DICH_ANTMA	2.0e-23	48.59	Transcription factor DICHOTOMA OS=Antirrhinum majus GN=DICH PE=2 SV=1	[more]

BLAST of Cucsa.280880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR2_CUCSA	3.4e-139	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577450 PE=4 SV=1	[more]
A0A061EB69_THECC	1.2e-35	47.81	TCP domain protein 12, putative OS=Theobroma cacao GN=TCM_011874 PE=4 SV=1	[more]
V4VET5_9ROSI	2.1e-35	44.54	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033382mg PE=4 SV=1	[more]
G3BGW4_SOLLC	7.9e-35	44.17	TCP transcription factor 22 OS=Solanum lycopersicum GN=TCP22 PE=2 SV=1	[more]
A0A0D2RHR0_GOSRA	1.3e-34	45.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G186800 PE=4 SV=1	[more]

BLAST of Cucsa.280880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68800.1	1.2e-29	40.45	TCP domain protein 12	[more]
AT1G67260.1	1.6e-23	43.86	TCP family transcription factor	[more]
AT3G18550.1	3.5e-18	35.47	TCP family transcription factor	[more]
AT4G18390.1	1.3e-17	37.32	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]
AT1G53230.1	6.6e-17	54.29	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]

BLAST of Cucsa.280880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708622\|ref\|XP_011656248.1\|	4.9e-139	100.00	PREDICTED: transcription factor TCP12 [Cucumis sativus]	[more]
gi\|659074615\|ref\|XP_008437699.1\|	9.1e-109	83.60	PREDICTED: transcription factor CYCLOIDEA [Cucumis melo]	[more]
gi\|590701110\|ref\|XP_007046319.1\|	1.7e-35	47.81	TCP domain protein 12, putative [Theobroma cacao]	[more]
gi\|567890447\|ref\|XP_006437744.1\|	3.0e-35	44.54	hypothetical protein CICLE_v10033382mg [Citrus clementina]	[more]
gi\|568862198\|ref\|XP_006484572.1\|	3.0e-35	44.54	PREDICTED: transcription factor TCP12 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005333	Transcription_factor_TCP
IPR017887	TF_TCP_subgr

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.280880.1	Cucsa.280880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 88..229 score: 5.4
IPR017887	Transcription factor TCP subgroup	PROFILE	PS51369	TCP	coord: 89..147 score: 35
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 8..225 score: 9.8
None	No IPR available	PANTHER	PTHR31072:SF22	TRANSCRIPTION FACTOR TCP12	coord: 8..225 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.280880	Cla002323	Watermelon (97103) v1	cgywmB513
Cucsa.280880	Csa5G577450	Cucumber (Chinese Long) v2	cgycuB398
Cucsa.280880	MELO3C005358	Melon (DHL92) v3.5.1	cgymeB467
Cucsa.280880	ClCG01G005720	Watermelon (Charleston Gray)	cgywcgB484
Cucsa.280880	CSPI05G20170	Wild cucumber (PI 183967)	cgycpiB421
Cucsa.280880	Lsi09G006020	Bottle gourd (USVL1VR-Ls)	cgylsiB452
Cucsa.280880	Lsi04G002940	Bottle gourd (USVL1VR-Ls)	cgylsiB455
Cucsa.280880	Cp4.1LG09g02690	Cucurbita pepo (Zucchini)	cgycpeB0732
Cucsa.280880	MELO3C005358.2	Melon (DHL92) v3.6.1	cgymedB463
Cucsa.280880	MELO3C012212.2	Melon (DHL92) v3.6.1	cgymedB466
Cucsa.280880	CsaV3_5G028970	Cucumber (Chinese Long) v3	cgycucB428
Cucsa.280880	CsaV3_5G033950	Cucumber (Chinese Long) v3	cgycucB429
Cucsa.280880	Cla97C01G005990	Watermelon (97103) v2	cgywmbB485
Cucsa.280880	Cla97C05G104950	Watermelon (97103) v2	cgywmbB489
Cucsa.280880	Bhi12G000708	Wax gourd	cgywgoB564
Cucsa.280880	Bhi07G001142	Wax gourd	cgywgoB568

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cucsa.280880	Cucsa.283930	Cucumber (Gy14) v1	cgycgyB136

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.280880	Silver-seed gourd	carcgyB0965
Cucsa.280880	Cucurbita maxima (Rimu)	cgycmaB0781
Cucsa.280880	Cucurbita moschata (Rifu)	cgycmoB0776