Carg20762 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20762
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor like
Location	Cucurbita_argyrosperma_scaffold_134 : 196771 .. 197658 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAACAAGACATGTTTGGTTTAGATCATGTAAACCCCAGCTCAATGGATCAACAACATGAGGAGAACTCCTCCTATCTACATTTCCCACATCCTTTTCTCGACGACGACCTATTTTTGACTCACTTTTTATCCCAACAACAAGAACAACAACAACAGCAACTCGTCAGTGGCGGAGATTGTTGGAAAGAACAAGACCAAGAACAAGAACAGGATAAAGCAGACGATATTGGACATGATCATAAGCAAAATTCAGAGAAGAAAGGTAGAAGAAGCTTGGAGGTGAAGAAGAAGAAGAAGAAGAAAGGTAGTAGTAGTAATAGTAATAGGAAAAATGGAAGCTCCACCACAAAGAGAACAGGGAAGAAGGACAGACACAGTAAGATCTGCACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAAAACCATAGAGTGGCTTCTCTCACACTCAAATTCCGCCATCAAGGCTCTCAAAAACAACAACAACAACAACAGCGGGGTTAGCCACGGCAGCGCGTGCTCCGGGTCGAGTGAGGTCGTGTCAAAACAAGACGCTGGTGGTTCCATTGGCACTCCCAAACACAAAAAGGGCAGGCAATTACAAACAATTGGTAGAGAGTCAAGGGCTAGGGCAAGAGCTAGGGCAAGAGAAAGAACAATGTTGAAGAAATCTCCACAACCCATTTGCATTTCTCAACATTATTTGAACTCAGATGAGACCCATTTGGAAGATTGCCCTAAAGTTTTTGCCTTTTCTGATGATCTCTCATCAATCCACACCTTTTTCTCAGGTAATATCACCACTTTCTTGCCCTAA

mRNA sequence

ATGATGAAACAAGACATGTTTGGTTTAGATCATGTAAACCCCAGCTCAATGGATCAACAACATGAGGAGAACTCCTCCTATCTACATTTCCCACATCCTTTTCTCGACGACGACCTATTTTTGACTCACTTTTTATCCCAACAACAAGAACAACAACAACAGCAACTCGTCAGTGGCGGAGATTGTTGGAAAGAACAAGACCAAGAACAAGAACAGGATAAAGCAGACGATATTGGACATGATCATAAGCAAAATTCAGAGAAGAAAGGTAGAAGAAGCTTGGAGGTGAAGAAGAAGAAGAAGAAGAAAGGTAGTAGTAGTAATAGTAATAGGAAAAATGGAAGCTCCACCACAAAGAGAACAGGGAAGAAGGACAGACACAGTAAGATCTGCACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAAAACCATAGAGTGGCTTCTCTCACACTCAAATTCCGCCATCAAGGCTCTCAAAAACAACAACAACAACAACAGCGGGGTTAGCCACGGCAGCGCGTGCTCCGGGTCGAGTGAGGTCGTGTCAAAACAAGACGCTGGTGGTTCCATTGGCACTCCCAAACACAAAAAGGGCAGGCAATTACAAACAATTGGTAGAGAGTCAAGGGCTAGGGCAAGAGCTAGGGCAAGAGAAAGAACAATGTTGAAGAAATCTCCACAACCCATTTGCATTTCTCAACATTATTTGAACTCAGATGAGACCCATTTGGAAGATTGCCCTAAAGTTTTTGCCTTTTCTGATGATCTCTCATCAATCCACACCTTTTTCTCAGGTAATATCACCACTTTCTTGCCCTAA

Coding sequence (CDS)

ATGATGAAACAAGACATGTTTGGTTTAGATCATGTAAACCCCAGCTCAATGGATCAACAACATGAGGAGAACTCCTCCTATCTACATTTCCCACATCCTTTTCTCGACGACGACCTATTTTTGACTCACTTTTTATCCCAACAACAAGAACAACAACAACAGCAACTCGTCAGTGGCGGAGATTGTTGGAAAGAACAAGACCAAGAACAAGAACAGGATAAAGCAGACGATATTGGACATGATCATAAGCAAAATTCAGAGAAGAAAGGTAGAAGAAGCTTGGAGGTGAAGAAGAAGAAGAAGAAGAAAGGTAGTAGTAGTAATAGTAATAGGAAAAATGGAAGCTCCACCACAAAGAGAACAGGGAAGAAGGACAGACACAGTAAGATCTGCACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAAAACCATAGAGTGGCTTCTCTCACACTCAAATTCCGCCATCAAGGCTCTCAAAAACAACAACAACAACAACAGCGGGGTTAGCCACGGCAGCGCGTGCTCCGGGTCGAGTGAGGTCGTGTCAAAACAAGACGCTGGTGGTTCCATTGGCACTCCCAAACACAAAAAGGGCAGGCAATTACAAACAATTGGTAGAGAGTCAAGGGCTAGGGCAAGAGCTAGGGCAAGAGAAAGAACAATGTTGAAGAAATCTCCACAACCCATTTGCATTTCTCAACATTATTTGAACTCAGATGAGACCCATTTGGAAGATTGCCCTAAAGTTTTTGCCTTTTCTGATGATCTCTCATCAATCCACACCTTTTTCTCAGGTAATATCACCACTTTCTTGCCCTAA

Protein sequence

MMKQDMFGLDHVNPSSMDQQHEENSSYLHFPHPFLDDDLFLTHFLSQQQEQQQQQLVSGGDCWKEQDQEQEQDKADDIGHDHKQNSEKKGRRSLEVKKKKKKKGSSSNSNRKNGSSTTKRTGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALKNNNNNNSGVSHGSACSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRESRARARARARERTMLKKSPQPICISQHYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP

Homology

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BLAST of Carg20762 vs. NCBI nr
Match: XP_022928828.1 (transcription factor CYCLOIDEA-like [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 2.7e-79
Identity = 269/279 (96.42%), Postives = 269/279 (96.42%), Query Frame = 0


Query: 17  MDQQHEENSSYLHFPHPFLDDDLFLTHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 76
           MDQQHEENSSYLHFPHPFLD        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDQQHEENSSYLHFPHPFLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 77  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKDRHSKICTAQGP 136
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKDRHSKICTAQGP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKDRHSKICTAQGP 120

Query: 137 RDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALKXXXXXXXXVSHGSA 196
           RDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKAL  XXXXXXXVSHGSA
Sbjct: 121 RDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALN-XXXXXXXVSHGSA 180

Query: 197 CSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRESRXXXXXXXXXXXXLKKSPQPICISQ 256
           CSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRESRXXXXXXXXXXXXLKKSPQPICISQ
Sbjct: 181 CSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRESRXXXXXXXXXXXXLKKSPQPICISQ 240

Query: 257 HYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP 296
           HYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP
Sbjct: 241 HYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP 278

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BLAST of Carg20762 vs. NCBI nr
Match: XP_022969767.1 (transcription factor TCP12-like [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 7.2e-77
Identity = 247/279 (88.53%), Postives = 248/279 (88.89%), Query Frame = 0


Query: 17  MDQQHEENSSYLHFPHPFLDDDLFLTHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 76
           MDQ+HEENSSYLHFPHPFLDDDLFLTH   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDQEHEENSSYLHFPHPFLDDDLFLTHLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 77  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKDRHSKICTAQGP 136
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            KKDRHSKICTAQGP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-----------KKDRHSKICTAQGP 120

Query: 137 RDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALKXXXXXXXXVSHGSA 196
           RDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK        VSHGSA
Sbjct: 121 RDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK-NNNNNSGVSHGSA 180

Query: 197 CSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRESRXXXXXXXXXXXXLKKSPQPICISQ 256
           CSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRES XXXXXXXXXXXX      PI ISQ
Sbjct: 181 CSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRESXXXXXXXXXXXXXXXXXXXPISISQ 240

Query: 257 HYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP 296
           HYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP
Sbjct: 241 HYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP 267

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BLAST of Carg20762 vs. NCBI nr
Match: XP_023550518.1 (transcription factor CYCLOIDEA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.8 bits (743), Expect = 5.2e-75
Identity = 263/281 (93.59%), Postives = 264/281 (93.95%), Query Frame = 0


Query: 17  MDQQHEENSSYLHFPHPFLDD-DLFLTHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 76
           MDQ+HEENSSYLHFPHPFLDD DLFLTHF    XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDQEHEENSSYLHFPHPFLDDEDLFLTHF---LXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 77  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKDRHSKICTAQG 136
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKDRHSKICTAQG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKDRHSKICTAQG 120

Query: 137 PRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKAL-KXXXXXXXXVSHG 196
           PRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKAL  XXXXXXXX  HG
Sbjct: 121 PRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALXXXXXXXXXXXXHG 180

Query: 197 SACSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRESRXXXXXXXXXXXXLKKSPQPICI 256
           SACSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRES XXXXXXXXXXXX      PI I
Sbjct: 181 SACSGSSEVVSKQDAGGSIGTPKHKKGRQLQTIGRESXXXXXXXXXXXXXXXXXXXPISI 240

Query: 257 SQHYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP 296
           SQHYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP
Sbjct: 241 SQHYLNSDETHLEDCPKVFAFSDDLSSIHTFFSGNITTFLP 278

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BLAST of Carg20762 vs. NCBI nr
Match: XP_022974210.1 (transcription factor CYCLOIDEA-like [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 154/296 (52.03%), Postives = 174/296 (58.78%), Query Frame = 0


Query: 1   MMKQDMFGLDHVNPSS-----MDQQHEENSSYLHFPHPFLD-DDLFLTHFXXXXXXXXXX 60
           MM  +MFG ++   ++       +QHEEN  YLHFPHPFLD DDLFLTH           
Sbjct: 1   MMNPNMFGSNNNTQTNHIALQHQEQHEEN-LYLHFPHPFLDHDDLFLTHI---------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 61  ----------LSSQQFFIGADCWGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKN 120

Query: 121 XXXXXXXGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHS 180
                  GKKDRHSKI TAQGPRDRR+RLSLQIARKFFDLQDMLGFDKAS TIEWLLS+S
Sbjct: 121 GSSRKKTGKKDRHSKIYTAQGPRDRRIRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNS 180

Query: 181 NSAIKALKXXXXXXXXVSHGSACSGSSEVVSKQ-----------DAGGSIGTPKHKKGRQ 240
            SAIK L+          +GS C GS+E VS+                 + TPKHK+ R 
Sbjct: 181 TSAIKDLQHSLANNSGHRYGSVCCGSTEAVSEMIRDXXXXXXXXXXXAFMATPKHKQSRA 240

Query: 241 LQTIGRESRXXXXXXXXXXXXLKKSPQPICISQHYLNSDETHLEDCPKVFAFSDDL 280
           L+ +GRESR  XXXXXXXX  LKK+ QPI           ++L+D   V A SDDL
Sbjct: 241 LRRVGRESRDRXXXXXXXXTMLKKTKQPI-----------SNLQDVSSVVAISDDL 264

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BLAST of Carg20762 vs. NCBI nr
Match: XP_022930117.1 (transcription factor TCP12-like [Cucurbita moschata])

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-32
Identity = 156/294 (53.06%), Postives = 176/294 (59.86%), Query Frame = 0


Query: 2   MKQDMFGLDHVNPSS----MDQQHEENSSYLHFPHPFLD-DDLFLTHFXXXXXXXXXXXX 61
           M  +MFG ++   ++      Q+  E + +LHFPHPFLD DDLFLTH             
Sbjct: 1   MNPNMFGSNNNTQTNHIALQHQEQHERNLHLHFPHPFLDQDDLFLTHI------------ 60

Query: 62  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ---------LSSQHFFIGADCWGEQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 122 XXXXXGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNS 181
           XXXX GKKDRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDKAS TIEWLLS+S S
Sbjct: 121 XXXXTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTS 180

Query: 182 AIKALKXXXXXXXXVSHGSACSGSSEVVSKQ-----------DAGGSIGTPKHKKGRQLQ 241
           AIK L+          +GS C GS+E VS+                 + TPKHK+ R L+
Sbjct: 181 AIKDLQHSLANNSGHRYGSVCCGSTEAVSEMIRDXXXXXXXXXXXAFMATPKHKQSRALR 240

Query: 242 TIGRESRXXXXXXXXXXXXLKKSPQPICISQHYLNSDETHLEDCPKVFAFSDDL 280
            +GRESR  XXXXXXXX  LKK  QPI           ++L+D   V A SDDL
Sbjct: 241 RVGRESRDRXXXXXXXXTMLKKIKQPI-----------SNLQDVSSVVAISDDL 262

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BLAST of Carg20762 vs. TAIR10
Match: AT1G68800.1 (TCP domain protein 12)

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-24
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK 182
           K+DRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWL S S ++IK LK
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171

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BLAST of Carg20762 vs. TAIR10
Match: AT1G67260.1 (TCP family transcription factor )

HSP 1 Score: 91.7 bits (226), Expect = 8.4e-19
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIK 180
           KKDRHSKI TAQG RDRR+RLS+ IAR+FFDLQDMLGFDKASKT++WLL  S  AIK
Sbjct: 87  KKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIK 143

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BLAST of Carg20762 vs. TAIR10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-16
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 122 GKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKAL 181
           G+KDRHSK+CTA+GPRDRR+RLS   A +F+D+QD LGFD+ SK ++WL++ + SAI  L
Sbjct: 48  GRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDL 107

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BLAST of Carg20762 vs. TAIR10
Match: AT3G18550.1 (TCP family transcription factor )

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-15
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAI 179
           + DRHSKI TA+G RDRRMRLSL +A++ F LQDMLGFDKASKT+EWLL+ +   I
Sbjct: 148 RTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEI 203

[Close]

BLAST of Carg20762 vs. TAIR10
Match: AT3G15030.1 (TCP family transcription factor 4)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-15
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 122 GKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKAL 181
           G+KDRHSK+CTA+GPRDRR+RLS   A +F+D+QD LGFD+ SK ++WL+  + ++I  L
Sbjct: 44  GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDEL 103

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BLAST of Carg20762 vs. Swiss-Prot
Match: sp|A0AQW4|TCP12_ARATH (Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.3e-23
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK 182
           K+DRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWL S S ++IK LK
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171

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BLAST of Carg20762 vs. Swiss-Prot
Match: sp|Q9SBV9|CYCLD_ANTMH (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum OX=102600 GN=CYC PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-19
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK 182
           KKDRHSKI T+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL+ S +A+K L 
Sbjct: 79  KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAVKELV 138

Query: 183 XXXXXXXXVSHGSACSGSSEVVSKQDAGGSIGTPKHKKGRQLQ 226
                    S  S C    EVVS +    S     H KG+ L+
Sbjct: 139 QSKSTKSNSS--SPCDDCEEVVSVE----SENVTDHSKGKSLK 175

[Close]

BLAST of Carg20762 vs. Swiss-Prot
Match: sp|O49250|CYCLD_ANTMA (Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19
Identity = 57/103 (55.34%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK 182
           KKDRHSKI T+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL+ S +AIK L 
Sbjct: 87  KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELV 146

Query: 183 XXXXXXXXVSHGSACSGSSEVVSKQDAGGSIGTPKHKKGRQLQ 226
                    S  S C    EVVS      S     H KG+ L+
Sbjct: 147 QSKSTKSNSS--SPCDDCEEVVSVD----SENVTDHSKGKSLK 183

[Close]

BLAST of Carg20762 vs. Swiss-Prot
Match: sp|Q9SBV6|CYCLD_ANTML (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum OX=102601 GN=CYC PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19
Identity = 57/103 (55.34%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK 182
           KKDRHSKI T+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL+ S +AIK L 
Sbjct: 79  KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELV 138

Query: 183 XXXXXXXXVSHGSACSGSSEVVSKQDAGGSIGTPKHKKGRQLQ 226
                    S  S C    EVVS      S     H KG+ L+
Sbjct: 139 QSKSTKSNSS--SPCDDCEEVVSVD----SENVTDHSKGKSLK 175

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BLAST of Carg20762 vs. Swiss-Prot
Match: sp|Q93WI2|TB1_MAIZE (Transcription factor TEOSINTE BRANCHED 1 OS=Zea mays OX=4577 GN=TB1 PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 8.0e-19
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK 182
           +KDRHSKICTA G RDRRMRLSL +ARKFF LQDMLGFDKASKT++WLL+ S SAI+ + 
Sbjct: 114 RKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKSAIQEIM 173

Query: 183 XXXXXXXXVSHGSA 197
                   V  GS+
Sbjct: 174 ADDASSECVEDGSS 187

[Close]

BLAST of Carg20762 vs. TrEMBL
Match: tr|A0A2N9J879|A0A2N9J879_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60531 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 122 GKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIK-- 181
           GKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWL + S +AIK  
Sbjct: 103 GKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTAIKEL 162

Query: 182 --ALKXXXXXXXXVSHGSACSGSSEV------VSKQDAGGSIGTPKHKKGRQLQTIGRES 232
             ++         V+  S  S +SE       V   D G  +   + KK R+L  + R+S
Sbjct: 163 TESISQVKQSCSHVAKSSTVSFTSESEVGSVNVEVADDGEFVNLAREKKNRKLHRVARDS 222

[Close]

BLAST of Carg20762 vs. TrEMBL
Match: tr|A0A0H4UQT6|A0A0H4UQT6_PETHY (TCP transcription factor 2 OS=Petunia hybrida OX=4102 GN=TCP2 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-21
Identity = 63/114 (55.26%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 122 GKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKAL 181
           GKKDRHSKICTAQG RDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWL S SN+AIK L
Sbjct: 119 GKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKEL 178

Query: 182 KXXXXXXXXVSHGSACSGSSEVVSKQDAGGSIGTPK-------HKKGRQLQTIG 229
                      + ++ +      SK +   S+   K       H+  R++++IG
Sbjct: 179 LANISQENNSCNSNSSNDQGRKESKFEVPSSLEKSKNEVKVKDHRNSRKMESIG 232

[Close]

BLAST of Carg20762 vs. TrEMBL
Match: tr|A0A0A0KRR2|A0A0A0KRR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577450 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.3e-21
Identity = 86/160 (53.75%), Postives = 95/160 (59.38%), Query Frame = 0


Query: 125 DRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALKXX 184
           DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLL +SNSAIK LK  
Sbjct: 91  DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQA 150

Query: 185 XXXXXXVSHGSACSGSSEVVS---------------------KQDAGGSIGTPKHKKGRQ 244
                     S    SSEVVS                     ++D   + G     K R 
Sbjct: 151 YFFKY-----SNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRT 210

Query: 245 LQTIGRESRXXXXXXXXXXXXLKKS-----PQPICISQHY 259
           L+T+ RE+R XXXXXXXXX  LK +     P    ISQH+
Sbjct: 211 LRTVAREARDXXXXXXXXXTLLKNTLLPNPPITSSISQHF 245

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BLAST of Carg20762 vs. TrEMBL
Match: tr|A0A1P8AWJ0|A0A1P8AWJ0_ARATH (TCP domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK 182
           K+DRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWL S S ++IK LK
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171

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BLAST of Carg20762 vs. TrEMBL
Match: tr|B3DN84|B3DN84_ARATH (At1g68800 OS=Arabidopsis thaliana OX=3702 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 123 KKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALK 182
           K+DRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWL S S ++IK LK
Sbjct: 90  KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 149

The following BLAST results are available for this feature:

BLAST of Carg20762 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928828.1	2.7e-79	96.42	transcription factor CYCLOIDEA-like [Cucurbita moschata]	[more]
XP_022969767.1	7.2e-77	88.53	transcription factor TCP12-like [Cucurbita maxima]	[more]
XP_023550518.1	5.2e-75	93.59	transcription factor CYCLOIDEA-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974210.1	1.3e-33	52.03	transcription factor CYCLOIDEA-like [Cucurbita maxima]	[more]
XP_022930117.1	3.2e-32	53.06	transcription factor TCP12-like [Cucurbita moschata]	[more]

BLAST of Carg20762 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68800.1	3.0e-24	88.33	TCP domain protein 12	[more]
AT1G67260.1	8.4e-19	78.95	TCP family transcription factor	[more]
AT1G53230.1	3.9e-16	60.00	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT3G18550.1	1.5e-15	67.86	TCP family transcription factor	[more]
AT3G15030.1	1.5e-15	56.67	TCP family transcription factor 4	[more]

BLAST of Carg20762 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A0AQW4\|TCP12_ARATH	5.3e-23	88.33	Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1	[more]
sp\|Q9SBV9\|CYCLD_ANTMH	1.2e-19	54.37	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigeru...	[more]
sp\|O49250\|CYCLD_ANTMA	1.6e-19	55.34	Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1	[more]
sp\|Q9SBV6\|CYCLD_ANTML	1.6e-19	55.34	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum ...	[more]
sp\|Q93WI2\|TB1_MAIZE	8.0e-19	64.86	Transcription factor TEOSINTE BRANCHED 1 OS=Zea mays OX=4577 GN=TB1 PE=2 SV=2	[more]

BLAST of Carg20762 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9J879\|A0A2N9J879_FAGSY	2.0e-22	55.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60531 PE=4 SV=1	[more]
tr\|A0A0H4UQT6\|A0A0H4UQT6_PETHY	1.7e-21	55.26	TCP transcription factor 2 OS=Petunia hybrida OX=4102 GN=TCP2 PE=2 SV=1	[more]
tr\|A0A0A0KRR2\|A0A0A0KRR2_CUCSA	8.3e-21	53.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577450 PE=4 SV=1	[more]
tr\|A0A1P8AWJ0\|A0A1P8AWJ0_ARATH	1.1e-20	88.33	TCP domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=4 SV=1	[more]
tr\|B3DN84\|B3DN84_ARATH	1.1e-20	88.33	At1g68800 OS=Arabidopsis thaliana OX=3702 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017888	CYC/TB1_R_domain
IPR017887	TF_TCP_subgr
IPR005333	Transcription_factor_TCP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20762-RA	Carg20762-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 121..247 e-value: 9.2E-39 score: 133.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..208
None	No IPR available	PANTHER	PTHR31072:SF22	TRANSCRIPTION FACTOR TCP12	coord: 4..267
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 4..267
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 123..181 score: 36.564
IPR017888	CYC/TB1, R domain	PROSITE	PS51370	R	coord: 229..246 score: 10.803

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20762	Cla002323	Watermelon (97103) v1	carwmB0737
Carg20762	MELO3C005358	Melon (DHL92) v3.5.1	carmeB0735
Carg20762	ClCG01G005720	Watermelon (Charleston Gray)	carwcgB0716
Carg20762	CmaCh15G014160	Cucurbita maxima (Rimu)	carcmaB1033
Carg20762	CmoCh15G014940	Cucurbita moschata (Rifu)	carcmoB1004
Carg20762	Lsi09G006020	Bottle gourd (USVL1VR-Ls)	carlsiB676
Carg20762	Cp4.1LG13g00270	Cucurbita pepo (Zucchini)	carcpeB1040
Carg20762	MELO3C005358.2	Melon (DHL92) v3.6.1	carmedB0746
Carg20762	Cla97C01G005990	Watermelon (97103) v2	carwmbB0774
Carg20762	Bhi12G000708	Wax gourd	carwgoB0875

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None