Lsi09G001090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G001090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_93
Location	chr09 : 1037590 .. 1038363 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCGTATCATTTCAAACCAACCGAACCGGTTCGTTCAGATCGGTTATGAACCGATTTCCACCCAACACAGCTGAAGTCACACCAAAAACCCCTGTGTGGGTGAATTCTTCTCGCTTGTAGTCGACTCTCTCAGAATCTCGGAGTCTTGGCGGCAGCGGCAAACCAGTGCGACGGCGCGTAGTAGTAGTCAAAGACGAACAGTGGTAGAGCTTTGTGCCACGAAATAGCGCGGTAGATTAGATATGTGGCTTCGCAGTATCCAAAGAATTGGAAATGCAGATGGAGGTGGAGGTTCTGCTGGCCTTGTGTTCAGCACATTTGCGAGGTATTTCTCGAGGAAGCGGGCAGAGAATCTTAGGAAGATCAATCCCAAGTTGACTCCTCAGGACGCTTCTTTGGTTGCTCAAGATCTCTATGGTGTTGTCAAGCAGCACGGCCCTCTCACCGTTTCCAATGCTTGGACTAAAGCTCAGGTAGGTTATCGGTTTTCCCCTCACTTTCAGTTTTTGTTACGCATCATCATTCATTTTCTTTCATTTCGATTTCGGATGGTGTTGTCGAAACTGAATTGACATTTACACCGTGCCTCCAACTATGTATGCGGGGGGGGGGTGTTGTTAGCGCCAACTACGTATAAAAAAACAGCTGATAATATATAATTAGTATCGTCATGCTAAATTGTTTGGATTTCTCATAGTGAAGACATTCAACCACGAGTTGCTTGATCTAGGCTATGTTAACTCAGCGGCCACATTAGCTAAAGCCTGA

mRNA sequence

ATGACGATCTCGACTCTCTCAGAATCTCGGAGTCTTGGCGGCAGCGGCAAACCAGTGCGACGGCGCGTAGTAGTAGTCAAAGACGAACATATCCAAAGAATTGGAAATGCAGATGGAGGTGGAGGTTCTGCTGGCCTTGTGTTCAGCACATTTGCGAGGTATTTCTCGAGGAAGCGGGCAGAGAATCTTAGGAAGATCAATCCCAAGTTGACTCCTCAGGACGCTTCTTTGGTTGCTCAAGATCTCTATGGTGTTGTCAAGCAGCACGGCCCTCTCACCGTTTCCAATGCTTGGACTAAAGCTCAGACATTCAACCACGAGTTGCTTGATCTAGGCTATGTTAACTCAGCGGCCACATTAGCTAAAGCCTGA

Coding sequence (CDS)

ATGACGATCTCGACTCTCTCAGAATCTCGGAGTCTTGGCGGCAGCGGCAAACCAGTGCGACGGCGCGTAGTAGTAGTCAAAGACGAACATATCCAAAGAATTGGAAATGCAGATGGAGGTGGAGGTTCTGCTGGCCTTGTGTTCAGCACATTTGCGAGGTATTTCTCGAGGAAGCGGGCAGAGAATCTTAGGAAGATCAATCCCAAGTTGACTCCTCAGGACGCTTCTTTGGTTGCTCAAGATCTCTATGGTGTTGTCAAGCAGCACGGCCCTCTCACCGTTTCCAATGCTTGGACTAAAGCTCAGACATTCAACCACGAGTTGCTTGATCTAGGCTATGTTAACTCAGCGGCCACATTAGCTAAAGCCTGA

Protein sequence

MTISTLSESRSLGGSGKPVRRRVVVVKDEHIQRIGNADGGGGSAGLVFSTFARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHGPLTVSNAWTKAQTFNHELLDLGYVNSAATLAKA

Homology

[Close]

BLAST of Lsi09G001090 vs. TrEMBL
Match: A0A0A0KK52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146270 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 31  IQRIGNADGGGGSAGLVFSTFARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHG 90
           IQRIGNADGGGG AGLVF+TFAR+FSRKRAENLRKINPKLTPQ+ASLVAQDLYGVV+QHG
Sbjct: 6   IQRIGNADGGGGFAGLVFNTFARHFSRKRAENLRKINPKLTPQEASLVAQDLYGVVQQHG 65

Query: 91  PLTVSNAWTKAQ 103
           PLT+SNAW KAQ
Sbjct: 66  PLTISNAWIKAQ 77

[Close]

BLAST of Lsi09G001090 vs. TrEMBL
Match: A0A067K078_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20340 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.4e-14
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 39  GGGGSAGLVFSTFARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHGPLTVSNAW 98
           GGGG+ G + S+  RYFSR RA N+RKINPK+   +A+ ++Q LY ++KQHGPLTVSN W
Sbjct: 6   GGGGNVGTIRSSLVRYFSRARAVNVRKINPKVPFPEAAYISQSLYSIIKQHGPLTVSNTW 65

Query: 99  TKAQTFN 106
             A+  N
Sbjct: 66  NHAKESN 72

[Close]

BLAST of Lsi09G001090 vs. TrEMBL
Match: W9SGY8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011827 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-13
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 34  IGNADGGGGSAGLVFS-----TFARYFSR---KRAENLRKINPKLTPQDASLVAQDLYGV 93
           +G A  GG ++   FS      + RYFSR   KRAEN+RKINP+++PQ+AS +A+ LY V
Sbjct: 9   VGGASNGGVASSSSFSKATAMAWVRYFSRDGRKRAENVRKINPRVSPQEASSIARGLYDV 68

Query: 94  VKQHGPLTVSNAWTKAQ 103
           VKQHGPLT+SNAW  A+
Sbjct: 69  VKQHGPLTISNAWLLAK 85

[Close]

BLAST of Lsi09G001090 vs. TrEMBL
Match: M5WNS2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012869mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.1e-13
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 44  AGLVFST--FARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHGPLTVSNAWTKA 103
           +GL+ S   F R+FSRKRAENLRKINPK++  +A+ +A+DLY VVKQHGPLT+SN W +A
Sbjct: 16  SGLITSATAFVRHFSRKRAENLRKINPKVSFPEANSIARDLYDVVKQHGPLTISNTWVQA 75

[Close]

BLAST of Lsi09G001090 vs. TrEMBL
Match: A0A068V349_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042441001 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1


Query: 41  GGSAGLVFSTFARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHGPLTVSNAWTK 100
           GG  G V +TF RYFSRKRA NLRKINPK+  Q+A+++A+ LY ++KQ+GPL+VSN W  
Sbjct: 4   GGGNGAV-TTFVRYFSRKRAPNLRKINPKVPQQEAAVIAESLYHIIKQNGPLSVSNTWNH 63

Query: 101 AQ 103
           A+
Sbjct: 64  AK 64

[Close]

BLAST of Lsi09G001090 vs. TAIR10
Match: AT1G73940.1 (AT1G73940.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-11
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 37  ADGGGG-----SAGLVF-------STFARYFSRKRAENLRKINPKLTPQDASLVAQDLYG 96
           A GGGG      A  +F       S   RY SR+RA N+RKINPK+  Q+A  ++  LY 
Sbjct: 4   AGGGGGLRKLCRASAIFDNEISYNSLLVRYMSRERAVNVRKINPKVPIQEAYAISNSLYD 63

Query: 97  VVKQHGPLTVSNAWTKAQ 103
           + K HGPL+V N W +AQ
Sbjct: 64  LFKLHGPLSVPNTWLRAQ 81

[Close]

BLAST of Lsi09G001090 vs. NCBI nr
Match: gi|449456295|ref|XP_004145885.1| (PREDICTED: uncharacterized protein LOC101211684 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-29
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 31  IQRIGNADGGGGSAGLVFSTFARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHG 90
           IQRIGNADGGGG AGLVF+TFAR+FSRKRAENLRKINPKLTPQ+ASLVAQDLYGVV+QHG
Sbjct: 6   IQRIGNADGGGGFAGLVFNTFARHFSRKRAENLRKINPKLTPQEASLVAQDLYGVVQQHG 65

Query: 91  PLTVSNAWTKAQ 103
           PLT+SNAW KAQ
Sbjct: 66  PLTISNAWIKAQ 77

[Close]

BLAST of Lsi09G001090 vs. NCBI nr
Match: gi|659074209|ref|XP_008437479.1| (PREDICTED: uncharacterized protein LOC103482888 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-28
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 31  IQRIGNADGGGGSAGLVFSTFARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHG 90
           IQRIGN DGGGG  GLVF+TFAR+FSRKRAENLRKINPKLTPQ+ASLVAQDLYGV++QHG
Sbjct: 6   IQRIGNTDGGGGLPGLVFNTFARHFSRKRAENLRKINPKLTPQEASLVAQDLYGVIQQHG 65

Query: 91  PLTVSNAWTKAQ 103
           PLTVSNAW KAQ
Sbjct: 66  PLTVSNAWIKAQ 77

[Close]

BLAST of Lsi09G001090 vs. NCBI nr
Match: gi|1009148570|ref|XP_015892008.1| (PREDICTED: uncharacterized protein LOC107426366 [Ziziphus jujuba])

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 34  IGNADGGGGSAGLVFSTFARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHGPLT 93
           IG + G GGS+    S+F RYFSRKRAENLRKINPK+ PQ+AS +A+ LY +VKQHGPL+
Sbjct: 4   IGASRGVGGSSIGCVSSFVRYFSRKRAENLRKINPKVPPQEASSIARSLYDIVKQHGPLS 63

Query: 94  VSNAWTKAQ 103
           VSNAW  A+
Sbjct: 64  VSNAWIHAK 72

[Close]

BLAST of Lsi09G001090 vs. NCBI nr
Match: gi|802733243|ref|XP_012086574.1| (PREDICTED: uncharacterized protein LOC105645560 [Jatropha curcas])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 39  GGGGSAGLVFSTFARYFSRKRAENLRKINPKLTPQDASLVAQDLYGVVKQHGPLTVSNAW 98
           GGGG+ G + S+  RYFSR RA N+RKINPK+   +A+ ++Q LY ++KQHGPLTVSN W
Sbjct: 6   GGGGNVGTIRSSLVRYFSRARAVNVRKINPKVPFPEAAYISQSLYSIIKQHGPLTVSNTW 65

Query: 99  TKAQTFN 106
             A+  N
Sbjct: 66  NHAKESN 72

[Close]

BLAST of Lsi09G001090 vs. NCBI nr
Match: gi|703154073|ref|XP_010110844.1| (hypothetical protein L484_011827 [Morus notabilis])

HSP 1 Score: 82.4 bits (202), Expect = 6.0e-13
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 34  IGNADGGGGSAGLVFS-----TFARYFSR---KRAENLRKINPKLTPQDASLVAQDLYGV 93
           +G A  GG ++   FS      + RYFSR   KRAEN+RKINP+++PQ+AS +A+ LY V
Sbjct: 9   VGGASNGGVASSSSFSKATAMAWVRYFSRDGRKRAENVRKINPRVSPQEASSIARGLYDV 68

Query: 94  VKQHGPLTVSNAWTKAQ 103
           VKQHGPLT+SNAW  A+
Sbjct: 69  VKQHGPLTISNAWLLAK 85

The following BLAST results are available for this feature:

BLAST of Lsi09G001090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G001090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK52_CUCSA	1.4e-29	90.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146270 PE=4 SV=1	[more]
A0A067K078_JATCU	8.4e-14	55.22	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20340 PE=4 SV=1	[more]
W9SGY8_9ROSA	4.2e-13	54.55	Uncharacterized protein OS=Morus notabilis GN=L484_011827 PE=4 SV=1	[more]
M5WNS2_PRUPE	7.1e-13	62.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012869mg PE=4 SV=1	[more]
A0A068V349_COFCA	1.2e-12	59.68	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042441001 PE=4 SV=1	[more]

BLAST of Lsi09G001090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73940.1	6.0e-11	44.87	unknown protein	[more]

BLAST of Lsi09G001090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456295\|ref\|XP_004145885.1\|	2.1e-29	90.28	PREDICTED: uncharacterized protein LOC101211684 [Cucumis sativus]	[more]
gi\|659074209\|ref\|XP_008437479.1\|	2.3e-28	87.50	PREDICTED: uncharacterized protein LOC103482888 [Cucumis melo]	[more]
gi\|1009148570\|ref\|XP_015892008.1\|	2.6e-16	65.22	PREDICTED: uncharacterized protein LOC107426366 [Ziziphus jujuba]	[more]
gi\|802733243\|ref\|XP_012086574.1\|	1.2e-13	55.22	PREDICTED: uncharacterized protein LOC105645560 [Jatropha curcas]	[more]
gi\|703154073\|ref\|XP_010110844.1\|	6.0e-13	54.55	hypothetical protein L484_011827 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G001090.1	Lsi09G001090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35110	FAMILY NOT NAMED	coord: 31..102 score: 1.2
None	No IPR available	PANTHER	PTHR35110:SF2	SUBFAMILY NOT NAMED	coord: 31..102 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G001090	Csa5G146270	Cucumber (Chinese Long) v2	culsiB322
Lsi09G001090	CSPI05G04010	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G001090	Cucsa.193260	Cucumber (Gy14) v1	cgylsiB328
Lsi09G001090	CmaCh02G009630	Cucurbita maxima (Rimu)	cmalsiB535
Lsi09G001090	CmoCh02G009700	Cucurbita moschata (Rifu)	cmolsiB521
Lsi09G001090	Cla004971	Watermelon (97103) v1	lsiwmB027
Lsi09G001090	MELO3C005810	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G001090	ClCG01G001250	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G001090	MELO3C005810.2	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G001090	Cla97C01G001280	Watermelon (97103) v2	lsiwmbB007
Lsi09G001090	Bhi12G000038	Wax gourd	lsiwgoB008
Lsi09G001090	Cp4.1LG05g07560	Cucurbita pepo (Zucchini)	cpelsiB578
Lsi09G001090	CsGy5G001250	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G001090	Carg08513	Silver-seed gourd	carlsiB646
Lsi09G001090	CsaV3_5G001370	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G001090	Cucurbita maxima (Rimu)	cmalsiB267
Lsi09G001090	Cucurbita moschata (Rifu)	cmolsiB255
Lsi09G001090	Cucurbita pepo (Zucchini)	cpelsiB002
Lsi09G001090	Silver-seed gourd	carlsiB944
Lsi09G001090	Cucumber (Chinese Long) v3	cuclsiB268