Lsi08G006110 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G006110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein EPIDERMAL PATTERNING FACTOR 2
Location	chr08 : 14445513 .. 14447946 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTGGATCATGTGAAGTGCAACAGATGTACATCTTCCTACATTAAAAACTAACCTTTTTTTTTCGTTTACACTGTATAAAATGCCCACTAGATACTAAATCATCTGTCACCAACATTTCCAACAAACTTTGTTTTCTCCTCCTTTTGCTTCTACCACTCCTTATATCCTGTTGGCTCTTGCATTATCAAACAAAGATGAAGAGTTTCCCACTTGTGGCTCACATTTCTCAACTTTTCGGAATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGCAACAACTCGGTGGGATCACAGTAAGAAAAATCATCATCTGTGTGGTTTATATTGTCAACTTATCTTGCTATTCTAGTGGCTGGGAAAATGCATTCATATCCCCATAACGCATACATCAACATTTTACTCTGATTTAGCTAGCCATGGCACTAAGCCTTTGAGTGTGTGATGTTTCAGTGAGCTTTAATGCAGAAGATACTCATAGAACAGTTGGCAATTCAAGGCACCAGCAGGTATTGTGTGTTTTTAATCTCACATTTCTCACCTAGTTTTAAACATTTTGCGATGAAATAACAAAAGGTCGCCCATCAGGGACAATAATAGGAAAAATATGAATAATGGATGCTCCTTGAACAAGACAAACCATGGCAACATGCTAACATGAAAGAACACTTTCCAAAGAACTTTACTGCAAAAAAAAATCTTCATTCAGTTTCATTGTCATGTGTGCCTGGGCAGGAAAAAACTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCTTGTCCAACTATCTACAGATGCATGTGTAAAGGGAAATATTATCACGTACCCTCCAATTGAGCATAAATTCAATCTGGAGGAATATGCAGCAAAGAACAAAGCAATTAACGATTTAGTTAGCACTTAGCACTGAGGTGACTATGGATATATTGAAGACTGAGACTACAGTCTGTTGATTTCATTAGGGTTTATTTCCTTGTACTGCGATCATTCTGTATGAGAGAGCAACTGAGACAACAAATTTTCAAGCACAGGAAGTTCAATTGGGAAGTGAGATTTCGGGGGGGGTTTCTAGTTTAGTCGTGTGCGATCACATGTCCATTGTTATATTCTACTTGTAATGAGATTTGGTTTATCCTGTTCCCCACCTTTCTAGGTTTTCAAGTTGAGAATATACAGTTGAATGGACATCAGAAAAACAAACCAGAATAAGAGGATGAGCCAGTAAAGTTTGTCACAGAGGGATATAAATCTATGTGAATTTCACCCCAAAAGGCATATATTCAGCCCAAAAAGTAAAGTTTGAGATTACTTGGCTGGAAACTATCCAGTAGCCAGACAATAATCGTAATAAAAAATCCAATAAAGAAACGAATGGCAGGGTGTCCTATCATAGAACGAACAGAAATAGCTGGTTTTCAAAAATTAATGAAAACCTAGTCTGAGGGAAATTGTAGAATAAGAAAAAATAAGCATAATAATAAGAAAATAACAATGATAATTCAAACAGATAGTACACAACTGCACAGGCCTAAGCCATTCTACACGATATACATTTCAAAACCATCCAAGACAACGTTCTTTACTAAATTGATTCTACTTCTATACCTCAAGCTCACTATTAGGCCTGGAAAAACTGGCAATTGACAGGGGAGACATTCAGCAATAACCATATCTGTCAAAAGGATCAATCTTCTAAGGATATTATATCGAACTCCAATCGAAAATCCAAACTACACGAATCAAAATGATAACAAACAAAATGATGGATCTTCTAAGCCGATTTATCTAGCCATATAAGTTGCAGAAGAAGGCAATTCATGTCAAAAGATCAACGATTACGAACGTAAACAATTATCCAGACGATCGAAATCAAGAAAGGCAACGCAAACTTTTCATTTGGTAAAACGGCGGCCAATATACGTCCACCTATAACGATTCGAATTGTAGGGAAAACCCCTTCGATCAGTTAAACAACATAATCGTTCGTCGAGCAGCAAATATTATCAGTCACTTCGACAAAAAAATCAAGTAGAATTAGATAATCTGACACTCAACCCAATTCCAAGAAAAAAGAGACACACACACGCGAATTCAGTAACCTTTCCAAACATCAGCTTTACATCTGAATCCGGACTATCAACTGACTCTACTGGAACCATCCCCGCCGTTTCCCCTAGAGCAACAAGGGTTTCCATTCCCATGATGGTGATTATCATCATCCTCCTGATCGCTGCCGTCCTCGTCAAAGGGTTTCTGCTTGTGGAATATACAGCACTTCTTCGAACTCTTCTTCTGCATGAACTCGTTGTCGACGGTCCCTTCCTTCCATGA

mRNA sequence

ATGGCCATGAAGAGTTTCCCACTTGTGGCTCACATTTCTCAACTTTTCGGAATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGCAACAACTCGGTGGGATCACATGAGCTTTAATGCAGAAGATACTCATAGAACAGTTGGCAATTCAAGGCACCAGCAGGAAAAAACTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCTTGTCCAACTATCTACAGATGCATGTGTAAAGGGAAATATTATCACACGATCGAAATCAAGAAAGGCAACGCAAACTTTTCATTTGGTAAAACGGCGGCCAATATACGTCCACCTATAACGATTCGAATTGGAAAACCCCTTCGATCAGTTAAACAACATAATCGTTCGTCGAGCAGCAAATATTATCAGTCACTTCGACAAAAAAATCAAGTAGAATTAGATAATCTGACACTCAACCCAATTCCAAGAAAAAAGAGACACACACACGCGAATTCAGTAACCTTTCCAAACATCAGCTTTACATCTGAATCCGGACTATCAACTGACTCTACTGGAACCATCCCCGCCGTTTCCCCTAGAGCAACAAGGGTTTCCATTCCCATGATGGTGATTATCATCATCCTCCTGATCGCTGCCGTCCTCGTCAAAGGGTTTCTGCTTGTGGAATATACAGCACTTCTTCGAACTCTTCTTCTGCATGAACTCGTTGTCGACGGTCCCTTCCTTCCATGA

Coding sequence (CDS)

ATGGCCATGAAGAGTTTCCCACTTGTGGCTCACATTTCTCAACTTTTCGGAATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGCAACAACTCGGTGGGATCACATGAGCTTTAATGCAGAAGATACTCATAGAACAGTTGGCAATTCAAGGCACCAGCAGGAAAAAACTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCTTGTCCAACTATCTACAGATGCATGTGTAAAGGGAAATATTATCACACGATCGAAATCAAGAAAGGCAACGCAAACTTTTCATTTGGTAAAACGGCGGCCAATATACGTCCACCTATAACGATTCGAATTGGAAAACCCCTTCGATCAGTTAAACAACATAATCGTTCGTCGAGCAGCAAATATTATCAGTCACTTCGACAAAAAAATCAAGTAGAATTAGATAATCTGACACTCAACCCAATTCCAAGAAAAAAGAGACACACACACGCGAATTCAGTAACCTTTCCAAACATCAGCTTTACATCTGAATCCGGACTATCAACTGACTCTACTGGAACCATCCCCGCCGTTTCCCCTAGAGCAACAAGGGTTTCCATTCCCATGATGGTGATTATCATCATCCTCCTGATCGCTGCCGTCCTCGTCAAAGGGTTTCTGCTTGTGGAATATACAGCACTTCTTCGAACTCTTCTTCTGCATGAACTCGTTGTCGACGGTCCCTTCCTTCCATGA

Protein sequence

MAMKSFPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYHTIEIKKGNANFSFGKTAANIRPPITIRIGKPLRSVKQHNRSSSSKYYQSLRQKNQVELDNLTLNPIPRKKRHTHANSVTFPNISFTSESGLSTDSTGTIPAVSPRATRVSIPMMVIIIILLIAAVLVKGFLLVEYTALLRTLLLHELVVDGPFLP

Homology

[Close]

BLAST of Lsi08G006110 vs. Swiss-Prot
Match: EPF2_ARATH (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.9e-21
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 52  SRHQQEKTKEV-LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMC 111
           + H++E +K   + ME+YPTGSSLPDCS+ACG C PCKRVM+SF+CSVAESC  IYRC C
Sbjct: 50  THHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSVAESCSVIYRCTC 109

Query: 112 KGKYYH 117
           +G+YYH
Sbjct: 110 RGRYYH 115

[Close]

BLAST of Lsi08G006110 vs. Swiss-Prot
Match: EPFL7_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-15
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1


Query: 70  TGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           +GSS+PDCS+ACGPC PCK V++S  CS +E+CP +Y+C+CKGKYYH
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSASEACPLVYKCLCKGKYYH 167

[Close]

BLAST of Lsi08G006110 vs. Swiss-Prot
Match: EPF1_ARATH (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.5e-11
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 1


Query: 13  SQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEVLGMELYPTGS 72
           S L   FF+    G  L       H+  ++  +H  VG +   + + +    +++   GS
Sbjct: 3   SLLLLAFFLSFFFGSLLAR-----HLPTSSHPSHHHVGMTGALKRQRRRPDTVQV--AGS 62

Query: 73  SLPDCSHACGPCFPCKRVMVSFKCS---VAESCPTIYRCMCKGKYY 116
            LPDCSHACG C PC+ VMVSF C+    AE+CP  Y+CMC  K Y
Sbjct: 63  RLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSY 101

[Close]

BLAST of Lsi08G006110 vs. TrEMBL
Match: A0A0A0KB66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052050 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-53
Identity = 103/113 (91.15%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 3   MKSFPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEV 62
           MK  PLVAHIS LF IFFIILMIG SLDAT RWDHMSFNAEDTHRT+ +SRHQQEKTKEV
Sbjct: 1   MKRLPLVAHISLLFVIFFIILMIGSSLDAT-RWDHMSFNAEDTHRTINHSRHQQEKTKEV 60

Query: 63  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYY 116
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPT+YRCMCKGKYY
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYY 112

[Close]

BLAST of Lsi08G006110 vs. TrEMBL
Match: A0A061FK47_THECC (Membrane lipoprotein OS=Theobroma cacao GN=TCM_036636 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 66/114 (57.89%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 3   MKSFPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEV 62
           M S  L      L   F ++ +   SL       H S + + T        H+QE  KE 
Sbjct: 1   MNSLSLRVAGQMLVLTFLMVSLATDSLRVPPHDHHASIHGKATKFGDKGQMHRQEGEKEE 60

Query: 63  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCS+AESCP +YRCMCKGKYYH
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSIAESCPIVYRCMCKGKYYH 114

[Close]

BLAST of Lsi08G006110 vs. TrEMBL
Match: B9MW47_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12090g PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-28
Identity = 67/113 (59.29%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 6   FPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQ--QEKTKEVL 65
           F + AH S L  + F++ M+G+SL     +   S++ E      G+  H   +E  +E L
Sbjct: 3   FLVGAHKSLLLMLIFMVFMVGKSL-RPHHYTKSSYSKEGASN--GDEAHDFPKEAAREEL 62

Query: 66  GMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           GMELYPTGSSLPDCSHACGPC PCKRVMVSFKCSVAESCP +YRCMCKGKYYH
Sbjct: 63  GMELYPTGSSLPDCSHACGPCTPCKRVMVSFKCSVAESCPIVYRCMCKGKYYH 112

[Close]

BLAST of Lsi08G006110 vs. TrEMBL
Match: M1CMS7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027541 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 1


Query: 21  IILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTK---EVLGMELYPTGSSLPDC 80
           ++LM+      + R  H S++ + T++   N  H +E+ K   +VLGME+YPTGSSLPDC
Sbjct: 15  LVLMLLVDSSQSLRPYHFSYHGKGTNKDNQNHVHLKEEKKGDHDVLGMEMYPTGSSLPDC 74

Query: 81  SHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           SHACGPCFPCKRVMVSF CS+AESCP +YRCMCKGKYYH
Sbjct: 75  SHACGPCFPCKRVMVSFACSIAESCPIVYRCMCKGKYYH 113

[Close]

BLAST of Lsi08G006110 vs. TrEMBL
Match: C6T619_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G168400 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 3   MKSFPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEV 62
           M +F L  H   L  +FF ++ IG SL      D ++   E+       +  + +K +E 
Sbjct: 1   MSTFSLGTHKFLLIVVFFTVISIGWSLRVIPNHDKLASLQEE------KATIRDKKEEEN 60

Query: 63  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           +GMELYPTGS++PDCSHACGPC PCKRVMVSFKCS+AESCP +YRC CKGKYYH
Sbjct: 61  MGMELYPTGSTIPDCSHACGPCSPCKRVMVSFKCSIAESCPIVYRCTCKGKYYH 108

[Close]

BLAST of Lsi08G006110 vs. TAIR10
Match: AT1G34245.1 (AT1G34245.1 Putative membrane lipoprotein)

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-22
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 52  SRHQQEKTKEV-LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMC 111
           + H++E +K   + ME+YPTGSSLPDCS+ACG C PCKRVM+SF+CSVAESC  IYRC C
Sbjct: 50  THHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSVAESCSVIYRCTC 109

Query: 112 KGKYYH 117
           +G+YYH
Sbjct: 110 RGRYYH 115

[Close]

BLAST of Lsi08G006110 vs. TAIR10
Match: AT1G71866.1 (AT1G71866.1 LOCATED IN: endomembrane system)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-16
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1


Query: 70  TGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           +GSS+PDCS+ACGPC PCK V++S  CS +E+CP +Y+C+CKGKYYH
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSASEACPLVYKCLCKGKYYH 167

[Close]

BLAST of Lsi08G006110 vs. TAIR10
Match: AT2G20875.1 (AT2G20875.1 epidermal patterning factor 1)

HSP 1 Score: 68.9 bits (167), Expect = 5.3e-12
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 1


Query: 13  SQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEVLGMELYPTGS 72
           S L   FF+    G  L       H+  ++  +H  VG +   + + +    +++   GS
Sbjct: 3   SLLLLAFFLSFFFGSLLAR-----HLPTSSHPSHHHVGMTGALKRQRRRPDTVQV--AGS 62

Query: 73  SLPDCSHACGPCFPCKRVMVSFKCS---VAESCPTIYRCMCKGKYY 116
            LPDCSHACG C PC+ VMVSF C+    AE+CP  Y+CMC  K Y
Sbjct: 63  RLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSY 101

[Close]

BLAST of Lsi08G006110 vs. NCBI nr
Match: gi|659113630|ref|XP_008456675.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 5.7e-56
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 1


Query: 3   MKSFPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEV 62
           MK FPLVAHIS LFGIFFIILMIGRSLDA  RWDHMSFNAEDTHRTV NSR+QQEKTKEV
Sbjct: 1   MKRFPLVAHISLLFGIFFIILMIGRSLDAA-RWDHMSFNAEDTHRTVNNSRNQQEKTKEV 60

Query: 63  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPT+YRCMCKGKYYH
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYH 113

[Close]

BLAST of Lsi08G006110 vs. NCBI nr
Match: gi|449446343|ref|XP_004140931.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 2.6e-53
Identity = 103/113 (91.15%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 3   MKSFPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEV 62
           MK  PLVAHIS LF IFFIILMIG SLDAT RWDHMSFNAEDTHRT+ +SRHQQEKTKEV
Sbjct: 1   MKRLPLVAHISLLFVIFFIILMIGSSLDAT-RWDHMSFNAEDTHRTINHSRHQQEKTKEV 60

Query: 63  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYY 116
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPT+YRCMCKGKYY
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYY 112

[Close]

BLAST of Lsi08G006110 vs. NCBI nr
Match: gi|590604351|ref|XP_007020231.1| (Membrane lipoprotein [Theobroma cacao])

HSP 1 Score: 134.0 bits (336), Expect = 3.8e-28
Identity = 66/114 (57.89%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 3   MKSFPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQQEKTKEV 62
           M S  L      L   F ++ +   SL       H S + + T        H+QE  KE 
Sbjct: 1   MNSLSLRVAGQMLVLTFLMVSLATDSLRVPPHDHHASIHGKATKFGDKGQMHRQEGEKEE 60

Query: 63  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCS+AESCP +YRCMCKGKYYH
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSIAESCPIVYRCMCKGKYYH 114

[Close]

BLAST of Lsi08G006110 vs. NCBI nr
Match: gi|566200833|ref|XP_006376332.1| (hypothetical protein POPTR_0013s12090g [Populus trichocarpa])

HSP 1 Score: 133.3 bits (334), Expect = 6.5e-28
Identity = 67/113 (59.29%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 6   FPLVAHISQLFGIFFIILMIGRSLDATTRWDHMSFNAEDTHRTVGNSRHQ--QEKTKEVL 65
           F + AH S L  + F++ M+G+SL     +   S++ E      G+  H   +E  +E L
Sbjct: 3   FLVGAHKSLLLMLIFMVFMVGKSL-RPHHYTKSSYSKEGASN--GDEAHDFPKEAAREEL 62

Query: 66  GMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
           GMELYPTGSSLPDCSHACGPC PCKRVMVSFKCSVAESCP +YRCMCKGKYYH
Sbjct: 63  GMELYPTGSSLPDCSHACGPCTPCKRVMVSFKCSVAESCPIVYRCMCKGKYYH 112

[Close]

BLAST of Lsi08G006110 vs. NCBI nr
Match: gi|731430477|ref|XP_010665052.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 isoform X1 [Vitis vinifera])

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 66/113 (58.41%), Postives = 77/113 (68.14%), Query Frame = 1


Query: 5   SFPLVAHISQLFGIFFIILMIGRSLDATTR-WDHMSFNAEDTHRTVGNSRHQQEKTKEVL 64
           S  LV H S L    F++L +G+ L  T   +   SF+ + TH    +  + QE  KE  
Sbjct: 4   SSSLVPHTSFLLVTLFLLLTLGKGLRFTHHHYTSSSFHGKGTHNGHQSHVNPQEGEKEEG 63

Query: 65  GMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTIYRCMCKGKYYH 117
            M +YPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCP +YRC CKGKYYH
Sbjct: 64  DMRVYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPIVYRCTCKGKYYH 116

The following BLAST results are available for this feature:

BLAST of Lsi08G006110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EPF2_ARATH	5.9e-21	66.67	Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=1 SV=1	[more]
EPFL7_ARATH	2.2e-15	65.96	EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana GN=EPFL7 PE=1...	[more]
EPF1_ARATH	9.5e-11	37.74	Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1	[more]

BLAST of Lsi08G006110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB66_CUCSA	1.8e-53	91.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052050 PE=4 SV=1	[more]
A0A061FK47_THECC	2.7e-28	57.89	Membrane lipoprotein OS=Theobroma cacao GN=TCM_036636 PE=4 SV=1	[more]
B9MW47_POPTR	4.5e-28	59.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12090g PE=4 SV=1	[more]
M1CMS7_SOLTU	1.0e-27	60.61	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027541 PE=4 SV=1	[more]
C6T619_SOYBN	1.5e-26	53.51	Uncharacterized protein OS=Glycine max GN=GLYMA_08G168400 PE=2 SV=1	[more]

BLAST of Lsi08G006110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34245.1	3.3e-22	66.67	Putative membrane lipoprotein	[more]
AT1G71866.1	1.2e-16	65.96	LOCATED IN: endomembrane system	[more]
AT2G20875.1	5.3e-12	37.74	epidermal patterning factor 1	[more]

BLAST of Lsi08G006110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113630\|ref\|XP_008456675.1\|	5.7e-56	93.86	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Cucumis melo]	[more]
gi\|449446343\|ref\|XP_004140931.1\|	2.6e-53	91.15	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 [Cucumis sativus]	[more]
gi\|590604351\|ref\|XP_007020231.1\|	3.8e-28	57.89	Membrane lipoprotein [Theobroma cacao]	[more]
gi\|566200833\|ref\|XP_006376332.1\|	6.5e-28	59.29	hypothetical protein POPTR_0013s12090g [Populus trichocarpa]	[more]
gi\|731430477\|ref\|XP_010665052.1\|	1.1e-27	58.41	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:2000122	negative regulation of stomatal complex development
biological_process	GO:0048730	epidermis morphogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G006110.1	Lsi08G006110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33109	FAMILY NOT NAMED	coord: 18..118 score: 1.5
None	No IPR available	PANTHER	PTHR33109:SF6	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 7-RELATED	coord: 18..118 score: 1.5
None	No IPR available	PFAM	PF17181	EPF	coord: 70..116 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G006110	Csa6G052050	Cucumber (Chinese Long) v2	culsiB478
Lsi08G006110	CSPI06G04310	Wild cucumber (PI 183967)	cpilsiB487
Lsi08G006110	Cucsa.364290	Cucumber (Gy14) v1	cgylsiB588
Lsi08G006110	CmaCh04G024860	Cucurbita maxima (Rimu)	cmalsiB703
Lsi08G006110	CmoCh04G026010	Cucurbita moschata (Rifu)	cmolsiB697
Lsi08G006110	CmoCh15G005580	Cucurbita moschata (Rifu)	cmolsiB282
Lsi08G006110	Cla013659	Watermelon (97103) v1	lsiwmB475
Lsi08G006110	MELO3C019934	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G006110	ClCG08G008650	Watermelon (Charleston Gray)	lsiwcgB443
Lsi08G006110	MELO3C019934.2	Melon (DHL92) v3.6.1	lsimedB491
Lsi08G006110	Cla97C08G151460	Watermelon (97103) v2	lsiwmbB448
Lsi08G006110	Bhi04G001278	Wax gourd	lsiwgoB593
Lsi08G006110	Carg01647	Silver-seed gourd	carlsiB758

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G006110	Silver-seed gourd	carlsiB059
Lsi08G006110	Silver-seed gourd	carlsiB769
Lsi08G006110	Cucumber (Chinese Long) v3	cuclsiB509
Lsi08G006110	Cucurbita maxima (Rimu)	cmalsiB294
Lsi08G006110	Cucurbita pepo (Zucchini)	cpelsiB158
Lsi08G006110	Cucurbita pepo (Zucchini)	cpelsiB382
Lsi08G006110	Cucumber (Gy14) v2	cgyblsiB444