Carg01647 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01647
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein EPIDERMAL PATTERNING FACTOR 2
Location	Cucurbita_argyrosperma_scaffold_004 : 2175860 .. 2176390 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATTCCCACTTGTGGCTCAAACTTCTCTACTTTTCTGGATTTTCTTCATCATACTAATGATTGGAAGACGTCTTGATGCATCGACTCACTGGGATCACAGTAAGAAAAATCATCATCTATGTGGTTTTTGTCAACTTATTTTGCTATTCTAGTTGCTAGGAAAATGCACTCATATCCCCAAGCCTTTTAAGTGTATGATATTTCAGTGAGCTTTAATGCAGAAGATACTCACAGACCAGTAGGCAGCTCAACGCACCACGAGGTACTGTGTTTTCTTCGTCTCCTCGCCACTTCATATCGAACATTTTGTGAGAAAATAAATATATCTGAGACAAGAATAGGAAAAACATGAATAATAGAGGCTCAACGAACTAGACGAACCATGACAACATGCTAACAGGAAAGAACTTAATTCAGTTTCCTTGTCATGTATGCCTGTGCAGGAAAAAACTGAAGCACTAGGTATGGAGTTATACCCGACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGA

mRNA sequence

ATGAAGAAATTCCCACTTGTGGCTCAAACTTCTCTACTTTTCTGGATTTTCTTCATCATACTAATGATTGGAAGACGTCTTGATGCATCGACTCACTGGGATCACATGAGCTTTAATGCAGAAGATACTCACAGACCAGTAGGCAGCTCAACGCACCACGAGGAAAAAACTGAAGCACTAGGTATGGAGTTATACCCGACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGA

Coding sequence (CDS)

ATGAAGAAATTCCCACTTGTGGCTCAAACTTCTCTACTTTTCTGGATTTTCTTCATCATACTAATGATTGGAAGACGTCTTGATGCATCGACTCACTGGGATCACATGAGCTTTAATGCAGAAGATACTCACAGACCAGTAGGCAGCTCAACGCACCACGAGGAAAAAACTGAAGCACTAGGTATGGAGTTATACCCGACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGA

Protein sequence

MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKTEALGMELYPTGSSLPDCSHACGP

Homology

[Close]

BLAST of Carg01647 vs. NCBI nr
Match: XP_022939743.1 (protein EPIDERMAL PATTERNING FACTOR 2-like [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 2.8e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKTEAL 60
          MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKTEAL
Sbjct: 1  MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKTEAL 60

Query: 61 GMELYPTGSSLPDCSHACGP 81
          GMELYPTGSSLPDCSHACGP
Sbjct: 61 GMELYPTGSSLPDCSHACGP 80

[Close]

BLAST of Carg01647 vs. NCBI nr
Match: XP_023550443.1 (protein EPIDERMAL PATTERNING FACTOR 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 2.7e-34
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKT-EA 60
          M KFPLVAQTSLLFWIFFIILMIGRRLDAST WDHMSFN EDTHRPVGSSTH EEKT EA
Sbjct: 1  MWKFPLVAQTSLLFWIFFIILMIGRRLDASTRWDHMSFNVEDTHRPVGSSTHQEEKTEEA 60

Query: 61 LGMELYPTGSSLPDCSHACGP 81
          LGMELYPTGS+LPDCSHACGP
Sbjct: 61 LGMELYPTGSNLPDCSHACGP 81

[Close]

BLAST of Carg01647 vs. NCBI nr
Match: XP_022992672.1 (protein EPIDERMAL PATTERNING FACTOR 2-like [Cucurbita maxima])

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-33
Identity = 76/81 (93.83%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKT-EA 60
          MKKFPLVAQT LLFWIFFIILMIGRRLDAST WDHM FNAEDTHRPVGSSTH EEKT EA
Sbjct: 1  MKKFPLVAQT-LLFWIFFIILMIGRRLDASTRWDHMRFNAEDTHRPVGSSTHQEEKTEEA 60

Query: 61 LGMELYPTGSSLPDCSHACGP 81
          LGMELYPTGSSLPDCSHACGP
Sbjct: 61 LGMELYPTGSSLPDCSHACGP 80

[Close]

BLAST of Carg01647 vs. NCBI nr
Match: XP_008456675.1 (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKT-EA 60
          MK+FPLVA  SLLF IFFIILMIGR LDA+  WDHMSFNAEDTHR V +S + +EKT E 
Sbjct: 1  MKRFPLVAHISLLFGIFFIILMIGRSLDAA-RWDHMSFNAEDTHRTVNNSRNQQEKTKEV 60

Query: 61 LGMELYPTGSSLPDCSHACGP 81
          LGMELYPTGSSLPDCSHACGP
Sbjct: 61 LGMELYPTGSSLPDCSHACGP 80

[Close]

BLAST of Carg01647 vs. NCBI nr
Match: XP_004140931.1 (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 [Cucumis sativus] >KGN46079.1 hypothetical protein Csa_6G052050 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 63/81 (77.78%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKT-EA 60
          MK+ PLVA  SLLF IFFIILMIG  LDA T WDHMSFNAEDTHR +  S H +EKT E 
Sbjct: 1  MKRLPLVAHISLLFVIFFIILMIGSSLDA-TRWDHMSFNAEDTHRTINHSRHQQEKTKEV 60

Query: 61 LGMELYPTGSSLPDCSHACGP 81
          LGMELYPTGSSLPDCSHACGP
Sbjct: 61 LGMELYPTGSSLPDCSHACGP 80

[Close]

BLAST of Carg01647 vs. TAIR10
Match: AT1G34245.1 (Putative membrane lipoprotein)

HSP 1 Score: 45.4 bits (106), Expect = 1.9e-05
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 49 SSTHHEE---KTEALGMELYPTGSSLPDCSHACG 80
          + THH++   K   + ME+YPTGSSLPDCS+ACG
Sbjct: 48 AQTHHKKEISKNGGVEMEMYPTGSSLPDCSYACG 81

[Close]

BLAST of Carg01647 vs. Swiss-Prot
Match: sp|Q8LC53|EPF2_ARATH (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-04
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 49 SSTHHEE---KTEALGMELYPTGSSLPDCSHACG 80
          + THH++   K   + ME+YPTGSSLPDCS+ACG
Sbjct: 48 AQTHHKKEISKNGGVEMEMYPTGSSLPDCSYACG 81

[Close]

BLAST of Carg01647 vs. TrEMBL
Match: tr|A0A1S3C3W6|A0A1S3C3W6_CUCME (protein EPIDERMAL PATTERNING FACTOR 1 OS=Cucumis melo OX=3656 GN=LOC103496551 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.8e-26
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKT-EA 60
          MK+FPLVA  SLLF IFFIILMIGR LDA+  WDHMSFNAEDTHR V +S + +EKT E 
Sbjct: 1  MKRFPLVAHISLLFGIFFIILMIGRSLDAA-RWDHMSFNAEDTHRTVNNSRNQQEKTKEV 60

Query: 61 LGMELYPTGSSLPDCSHACGP 81
          LGMELYPTGSSLPDCSHACGP
Sbjct: 61 LGMELYPTGSSLPDCSHACGP 80

[Close]

BLAST of Carg01647 vs. TrEMBL
Match: tr|A0A0A0KB66|A0A0A0KB66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052050 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-25
Identity = 63/81 (77.78%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKT-EA 60
          MK+ PLVA  SLLF IFFIILMIG  LDA T WDHMSFNAEDTHR +  S H +EKT E 
Sbjct: 1  MKRLPLVAHISLLFVIFFIILMIGSSLDA-TRWDHMSFNAEDTHRTINHSRHQQEKTKEV 60

Query: 61 LGMELYPTGSSLPDCSHACGP 81
          LGMELYPTGSSLPDCSHACGP
Sbjct: 61 LGMELYPTGSSLPDCSHACGP 80

[Close]

BLAST of Carg01647 vs. TrEMBL
Match: tr|A0A2I4DQQ5|A0A2I4DQQ5_9ROSI (protein EPIDERMAL PATTERNING FACTOR 2 OS=Juglans regia OX=51240 GN=LOC108982531 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 41/82 (50.00%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 1  MKKFPLVAQTSLLFWIFFIILMI-GRRLDASTHWDHMSFNAEDTH-RPVGSSTHHEEKTE 60
          MK   L A TS LF  FF+IL+     L  +  +  +SFN E T+    G  +  E+  E
Sbjct: 1  MKNLSLGAHTSFLFLSFFLILITSSTSLRVTNRYFSVSFNEEATNFGDQGHISPKEDAKE 60

Query: 61 ALGMELYPTGSSLPDCSHACGP 81
            GMELYPTGSSLPDCSHACGP
Sbjct: 61 EHGMELYPTGSSLPDCSHACGP 82

[Close]

BLAST of Carg01647 vs. TrEMBL
Match: tr|B9MW47|B9MW47_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G116600v3 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 38/81 (46.91%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 3  KFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTH---HEEKTEA 62
          KF + A  SLL  + F++ M+G+ L    H+   S++ E      G   H    E   E 
Sbjct: 2  KFLVGAHKSLLLMLIFMVFMVGKSL-RPHHYTKSSYSKEGASN--GDEAHDFPKEAAREE 61

Query: 63 LGMELYPTGSSLPDCSHACGP 81
          LGMELYPTGSSLPDCSHACGP
Sbjct: 62 LGMELYPTGSSLPDCSHACGP 79

[Close]

BLAST of Carg01647 vs. TrEMBL
Match: tr|A0A172LNU9|A0A172LNU9_9ROSI (Epidermal patterning factor 2 OS=Populus nigra x (Populus deltoids x Populus nigra) OX=1837952 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 38/81 (46.91%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 3  KFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTH---HEEKTEA 62
          KF + A  SLL  + F++ M+G+ L    H+   S++ E      G   H    E   E 
Sbjct: 2  KFLVGAHKSLLLMLIFMVFMVGKSL-RPHHYTKPSYSKEGASN--GDEAHDFPKEAPREE 61

Query: 63 LGMELYPTGSSLPDCSHACGP 81
          LGMELYPTGSSLPDCSHACGP
Sbjct: 62 LGMELYPTGSSLPDCSHACGP 79

The following BLAST results are available for this feature:

BLAST of Carg01647 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939743.1	2.8e-39	100.00	protein EPIDERMAL PATTERNING FACTOR 2-like [Cucurbita moschata]	[more]
XP_023550443.1	2.7e-34	92.59	protein EPIDERMAL PATTERNING FACTOR 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022992672.1	1.7e-33	93.83	protein EPIDERMAL PATTERNING FACTOR 2-like [Cucurbita maxima]	[more]
XP_008456675.1	1.3e-25	79.01	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo]	[more]
XP_004140931.1	5.1e-25	77.78	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 [Cucumis sativus] >KGN46079.1 h...	[more]

BLAST of Carg01647 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34245.1	1.9e-05	58.82	Putative membrane lipoprotein	[more]

BLAST of Carg01647 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LC53\|EPF2_ARATH	3.4e-04	58.82	Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE...	[more]

BLAST of Carg01647 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3W6\|A0A1S3C3W6_CUCME	8.8e-26	79.01	protein EPIDERMAL PATTERNING FACTOR 1 OS=Cucumis melo OX=3656 GN=LOC103496551 PE...	[more]
tr\|A0A0A0KB66\|A0A0A0KB66_CUCSA	3.3e-25	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052050 PE=4 SV=1	[more]
tr\|A0A2I4DQQ5\|A0A2I4DQQ5_9ROSI	2.2e-08	50.00	protein EPIDERMAL PATTERNING FACTOR 2 OS=Juglans regia OX=51240 GN=LOC108982531 ...	[more]
tr\|B9MW47\|B9MW47_POPTR	1.1e-07	46.91	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G116600v3 PE=...	[more]
tr\|A0A172LNU9\|A0A172LNU9_9ROSI	1.4e-07	46.91	Epidermal patterning factor 2 OS=Populus nigra x (Populus deltoids x Populus nig...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01647-RA	Carg01647-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01647	Csa6G052050	Cucumber (Chinese Long) v2	carcuB0850
Carg01647	MELO3C019934	Melon (DHL92) v3.5.1	carmeB0823
Carg01647	CSPI06G04310	Wild cucumber (PI 183967)	carcpiB0870
Carg01647	CmaCh04G024860	Cucurbita maxima (Rimu)	carcmaB1150
Carg01647	CmoCh04G026010	Cucurbita moschata (Rifu)	carcmoB1121
Carg01647	CmoCh15G005580	Cucurbita moschata (Rifu)	carcmoB1118
Carg01647	Lsi08G006110	Bottle gourd (USVL1VR-Ls)	carlsiB758
Carg01647	MELO3C019934.2	Melon (DHL92) v3.6.1	carmedB0834

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01647	Cucumber (Gy14) v1	carcgyB0955
Carg01647	Cucurbita maxima (Rimu)	carcmaB1148
Carg01647	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01647	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01647	Cucumber (Chinese Long) v3	carcucB0874
Carg01647	Watermelon (Charleston Gray)	carwcgB0805
Carg01647	Watermelon (97103) v1	carwmB0826
Carg01647	Watermelon (97103) v2	carwmbB0864
Carg01647	Wax gourd	carwgoB0965
Carg01647	Silver-seed gourd	carcarB076
Carg01647	Cucumber (Gy14) v2	carcgybB0824