CmoCh04G026010 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 18992271 .. 18992769 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTCTATTTTCTCCTTCTTTCGCATTTACCACTTCATTCTTATATTGTTTTGGCTTTTGCATTATCGAACAACAATGAAGAAATTTTCTATTGTAGCTCACATGTCTCTACTTTTCGGAATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGTAACAACTCGCTGGGATCACAGTAAGATAAATCATCATCTACGTGATTGTGGTTTACATTATCTATTTATTGTGTCATTCTAGTTGTTGAGAAAACGCATTTGTATCCCTATAACTACATCGATATCTTTCTCTGATTTAGATATGGCATTTAAGCTTTTAAGTGTGATGTTTCAGTGAGCTACAATGCAGAAGATGCTCACAGAACAGATGGCAGTTTAAGGCAAGAGGAGGTATTGTGTGTTTTCTCAGCCCACATTTCTTCACCTAGTTCAAAACATTTTGCTAGAAAATTTACAGAAAAAGATAGCCTAACTGGGACAAGAACAGGAAAAATATGA

mRNA sequence

AGTCTATTTTCTCCTTCTTTCGCATTTACCACTTCATTCTTATATTGTTTTGGCTTTTGCATTATCGAACAACAATGAAGAAATTTTCTATTGTAGCTCACATGTCTCTACTTTTCGGAATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGTAACAACTCGCTGGGATCACATGAGCTACAATGCAGAAGATGCTCACAGAACAGATGGCAGTTTAAGGCAAGAGGAGGTATTGTGTGTTTTCTCAGCCCACATTTCTTCACCTAGTTCAAAACATTTTGCTAGAAAATTTACAGAAAAAGATAGCCTAACTGGGACAAGAACAGGAAAAATATGA

Coding sequence (CDS)

ATGAAGAAATTTTCTATTGTAGCTCACATGTCTCTACTTTTCGGAATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGTAACAACTCGCTGGGATCACATGAGCTACAATGCAGAAGATGCTCACAGAACAGATGGCAGTTTAAGGCAAGAGGAGGTATTGTGTGTTTTCTCAGCCCACATTTCTTCACCTAGTTCAAAACATTTTGCTAGAAAATTTACAGAAAAAGATAGCCTAACTGGGACAAGAACAGGAAAAATATGA
Homology
[Close]
BLAST of CmoCh04G026010 vs. TrEMBL
Match: A0A0A0KB66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052050 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 1  MKKFSIVAHMSLLFGIFFIILMIGRSLDVTTRWDHMSYNAEDAHRTDGSLRQEE 55
          MK+  +VAH+SLLF IFFIILMIG SLD  TRWDHMS+NAED HRT    R ++
Sbjct: 1  MKRLPLVAHISLLFVIFFIILMIGSSLD-ATRWDHMSFNAEDTHRTINHSRHQQ 53

[Close]
BLAST of CmoCh04G026010 vs. NCBI nr
Match: gi|659113630|ref|XP_008456675.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 1  MKKFSIVAHMSLLFGIFFIILMIGRSLDVTTRWDHMSYNAEDAHRTDGSLRQEE 55
          MK+F +VAH+SLLFGIFFIILMIGRSLD   RWDHMS+NAED HRT  + R ++
Sbjct: 1  MKRFPLVAHISLLFGIFFIILMIGRSLD-AARWDHMSFNAEDTHRTVNNSRNQQ 53

[Close]
BLAST of CmoCh04G026010 vs. NCBI nr
Match: gi|449446343|ref|XP_004140931.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 1  MKKFSIVAHMSLLFGIFFIILMIGRSLDVTTRWDHMSYNAEDAHRTDGSLRQEE 55
          MK+  +VAH+SLLF IFFIILMIG SLD  TRWDHMS+NAED HRT    R ++
Sbjct: 1  MKRLPLVAHISLLFVIFFIILMIGSSLD-ATRWDHMSFNAEDTHRTINHSRHQQ 53

The following BLAST results are available for this feature:
BLAST of CmoCh04G026010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB66_CUCSA1.2e-0966.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052050 PE=4 SV=1[more]
BLAST of CmoCh04G026010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113630|ref|XP_008456675.1|1.4e-1170.37PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Cucumis melo][more]
gi|449446343|ref|XP_004140931.1|1.7e-0966.67PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048730 epidermis morphogenesis
biological_process GO:0010052 guard cell differentiation
biological_process GO:2000122 negative regulation of stomatal complex development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026010.1CmoCh04G026010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G026010CmaCh04G024860Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G026010ClCG08G008650Watermelon (Charleston Gray)cmowcgB682
CmoCh04G026010Lsi08G006110Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G026010Bhi04G001278Wax gourdcmowgoB0858
CmoCh04G026010Carg01647Silver-seed gourdcarcmoB1121
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G026010Cucurbita moschata (Rifu)cmocmoB029
CmoCh04G026010Cucurbita moschata (Rifu)cmocmoB262
CmoCh04G026010Cucumber (Gy14) v1cgycmoB1004
CmoCh04G026010Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G026010Wild cucumber (PI 183967)cmocpiB769
CmoCh04G026010Cucumber (Chinese Long) v2cmocuB760
CmoCh04G026010Melon (DHL92) v3.5.1cmomeB667
CmoCh04G026010Watermelon (97103) v1cmowmB663
CmoCh04G026010Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G026010Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G026010Cucumber (Gy14) v2cgybcmoB815
CmoCh04G026010Melon (DHL92) v3.6.1cmomedB754
CmoCh04G026010Silver-seed gourdcarcmoB0094
CmoCh04G026010Cucumber (Chinese Long) v3cmocucB0898
CmoCh04G026010Watermelon (97103) v2cmowmbB762