Cla97C08G151460 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G151460
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein EPIDERMAL PATTERNING FACTOR 1
Location	Cla97Chr08 : 19768083 .. 19768253 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCTTGTCCAACTGTCTACAGATGCATGTGTAAAGGGAAATATTATCATGTACCCTCCAATTGA

mRNA sequence

ATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCTTGTCCAACTGTCTACAGATGCATGTGTAAAGGGAAATATTATCATGTACCCTCCAATTGA

Coding sequence (CDS)

ATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCTTGTCCAACTGTCTACAGATGCATGTGTAAAGGGAAATATTATCATGTACCCTCCAATTGA

Protein sequence

MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN

Homology

[Close]

BLAST of Cla97C08G151460 vs. NCBI nr
Match: XP_008456675.1 (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 62  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 117

[Close]

BLAST of Cla97C08G151460 vs. NCBI nr
Match: XP_022134337.1 (protein EPIDERMAL PATTERNING FACTOR 2-like [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 63  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 118

[Close]

BLAST of Cla97C08G151460 vs. NCBI nr
Match: XP_022957958.1 (protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita moschata] >XP_023518828.1 protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 63  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 118

[Close]

BLAST of Cla97C08G151460 vs. NCBI nr
Match: XP_022990492.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 63  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 118

[Close]

BLAST of Cla97C08G151460 vs. NCBI nr
Match: XP_022992672.1 (protein EPIDERMAL PATTERNING FACTOR 2-like [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 62  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 117

[Close]

BLAST of Cla97C08G151460 vs. TrEMBL
Match: tr|A0A1S3C3W6|A0A1S3C3W6_CUCME (protein EPIDERMAL PATTERNING FACTOR 1 OS=Cucumis melo OX=3656 GN=LOC103496551 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 62  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 117

[Close]

BLAST of Cla97C08G151460 vs. TrEMBL
Match: tr|A0A061FK47|A0A061FK47_THECC (Membrane lipoprotein OS=Theobroma cacao OX=3641 GN=TCM_036636 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.3e-27
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCS+AESCP VYRCMCKGKYYHVPSN
Sbjct: 63  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSIAESCPIVYRCMCKGKYYHVPSN 118

[Close]

BLAST of Cla97C08G151460 vs. TrEMBL
Match: tr|A0A1U8PP01|A0A1U8PP01_GOSHI (protein EPIDERMAL PATTERNING FACTOR 2-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107961218 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-27
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCS+AESCP VYRCMCKGKYYHVPSN
Sbjct: 64  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSMAESCPVVYRCMCKGKYYHVPSN 119

[Close]

BLAST of Cla97C08G151460 vs. TrEMBL
Match: tr|A0A1U8J8W9|A0A1U8J8W9_GOSHI (protein EPIDERMAL PATTERNING FACTOR 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107903116 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-27
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCS+AESCP VYRCMCKGKYYHVPSN
Sbjct: 59  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSMAESCPVVYRCMCKGKYYHVPSN 114

[Close]

BLAST of Cla97C08G151460 vs. TrEMBL
Match: tr|A0A1U8PP26|A0A1U8PP26_GOSHI (protein EPIDERMAL PATTERNING FACTOR 2-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107961218 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-27
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 57
           MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCS+AESCP VYRCMCKGKYYHVPSN
Sbjct: 63  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSMAESCPVVYRCMCKGKYYHVPSN 118

[Close]

BLAST of Cla97C08G151460 vs. Swiss-Prot
Match: sp|Q8LC53|EPF2_ARATH (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-23
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 56
           ME+YPTGSSLPDCS+ACG C PCKRVM+SF+CSVAESC  +YRC C+G+YYHVPS
Sbjct: 64  MEMYPTGSSLPDCSYACGACSPCKRVMISFECSVAESCSVIYRCTCRGRYYHVPS 118

[Close]

BLAST of Cla97C08G151460 vs. Swiss-Prot
Match: sp|C4B8C5|EPFL7_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-18
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 6   TGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 56
           +GSS+PDCS+ACGPC PCK V++S  CS +E+CP VY+C+CKGKYYHVPS
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSASEACPLVYKCLCKGKYYHVPS 170

[Close]

BLAST of Cla97C08G151460 vs. Swiss-Prot
Match: sp|Q8S8I4|EPF1_ARATH (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-12
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 7   GSSLPDCSHACGPCFPCKRVMVSFKCS---VAESCPTVYRCMCKGKYYHVP 55
           GS LPDCSHACG C PC+ VMVSF C+    AE+CP  Y+CMC  K Y VP
Sbjct: 54  GSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of Cla97C08G151460 vs. TAIR10
Match: AT1G34245.1 (Putative membrane lipoprotein)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-24
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 56
           ME+YPTGSSLPDCS+ACG C PCKRVM+SF+CSVAESC  +YRC C+G+YYHVPS
Sbjct: 64  MEMYPTGSSLPDCSYACGACSPCKRVMISFECSVAESCSVIYRCTCRGRYYHVPS 118

[Close]

BLAST of Cla97C08G151460 vs. TAIR10
Match: AT1G71866.1 (LOCATED IN: endomembrane system)

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-19
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 6   TGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 56
           +GSS+PDCS+ACGPC PCK V++S  CS +E+CP VY+C+CKGKYYHVPS
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSASEACPLVYKCLCKGKYYHVPS 170

[Close]

BLAST of Cla97C08G151460 vs. TAIR10
Match: AT2G20875.1 (epidermal patterning factor 1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-13
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 7   GSSLPDCSHACGPCFPCKRVMVSFKCS---VAESCPTVYRCMCKGKYYHVP 55
           GS LPDCSHACG C PC+ VMVSF C+    AE+CP  Y+CMC  K Y VP
Sbjct: 54  GSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

The following BLAST results are available for this feature:

BLAST of Cla97C08G151460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456675.1	1.0e-27	100.00	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo]	[more]
XP_022134337.1	1.0e-27	100.00	protein EPIDERMAL PATTERNING FACTOR 2-like [Momordica charantia]	[more]
XP_022957958.1	1.0e-27	100.00	protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita moschata] >XP_023518828.1 ...	[more]
XP_022990492.1	1.0e-27	100.00	protein EPIDERMAL PATTERNING FACTOR 1 [Cucurbita maxima]	[more]
XP_022992672.1	1.0e-27	100.00	protein EPIDERMAL PATTERNING FACTOR 2-like [Cucurbita maxima]	[more]

BLAST of Cla97C08G151460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3W6\|A0A1S3C3W6_CUCME	6.6e-28	100.00	protein EPIDERMAL PATTERNING FACTOR 1 OS=Cucumis melo OX=3656 GN=LOC103496551 PE...	[more]
tr\|A0A061FK47\|A0A061FK47_THECC	4.3e-27	96.43	Membrane lipoprotein OS=Theobroma cacao OX=3641 GN=TCM_036636 PE=4 SV=1	[more]
tr\|A0A1U8PP01\|A0A1U8PP01_GOSHI	5.6e-27	96.43	protein EPIDERMAL PATTERNING FACTOR 2-like isoform X1 OS=Gossypium hirsutum OX=3...	[more]
tr\|A0A1U8J8W9\|A0A1U8J8W9_GOSHI	5.6e-27	96.43	protein EPIDERMAL PATTERNING FACTOR 2-like OS=Gossypium hirsutum OX=3635 GN=LOC1...	[more]
tr\|A0A1U8PP26\|A0A1U8PP26_GOSHI	5.6e-27	96.43	protein EPIDERMAL PATTERNING FACTOR 2-like isoform X2 OS=Gossypium hirsutum OX=3...	[more]

BLAST of Cla97C08G151460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LC53\|EPF2_ARATH	3.9e-23	78.18	Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE...	[more]
sp\|C4B8C5\|EPFL7_ARATH	6.4e-18	70.00	EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
sp\|Q8S8I4\|EPF1_ARATH	1.8e-12	62.75	Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE...	[more]

BLAST of Cla97C08G151460 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34245.1	2.1e-24	78.18	Putative membrane lipoprotein	[more]
AT1G71866.1	3.5e-19	70.00	LOCATED IN: endomembrane system	[more]
AT2G20875.1	1.0e-13	62.75	epidermal patterning factor 1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048730	epidermis morphogenesis
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:2000122	negative regulation of stomatal complex development
biological_process	GO:0090626	plant epidermis morphogenesis
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0019901	protein kinase binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G151460.1	Cla97C08G151460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 6..53 e-value: 1.1E-15 score: 57.2
None	No IPR available	PANTHER	PTHR33109:SF6	PROTEIN EPIDERMAL PATTERNING FACTOR 2	coord: 1..55
None	No IPR available	PANTHER	PTHR33109	FAMILY NOT NAMED	coord: 1..55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G151460	Cla013659	Watermelon (97103) v1	wmwmbB100
Cla97C08G151460	Csa6G052050	Cucumber (Chinese Long) v2	cuwmbB488
Cla97C08G151460	MELO3C019934	Melon (DHL92) v3.5.1	mewmbB307
Cla97C08G151460	ClCG08G008650	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G151460	CSPI06G04310	Wild cucumber (PI 183967)	cpiwmbB514
Cla97C08G151460	Cucsa.364290	Cucumber (Gy14) v1	cgywmbB629
Cla97C08G151460	CmaCh04G024860	Cucurbita maxima (Rimu)	cmawmbB788
Cla97C08G151460	CmoCh15G005580	Cucurbita moschata (Rifu)	cmowmbB300
Cla97C08G151460	Lsi08G006110	Bottle gourd (USVL1VR-Ls)	lsiwmbB448
Cla97C08G151460	MELO3C019934.2	Melon (DHL92) v3.6.1	medwmbB295

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G151460	Cucumber (Chinese Long) v3	cucwmbB506
Cla97C08G151460	Wax gourd	wgowmbB329
Cla97C08G151460	Watermelon (97103) v2	wmbwmbB143
Cla97C08G151460	Silver-seed gourd	carwmbB0064
Cla97C08G151460	Silver-seed gourd	carwmbB0864
Cla97C08G151460	Cucumber (Gy14) v2	cgybwmbB464
Cla97C08G151460	Cucurbita maxima (Rimu)	cmawmbB317
Cla97C08G151460	Cucurbita moschata (Rifu)	cmowmbB762