Lsi07G009020 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G009020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Location	chr07 : 10352539 .. 10357529 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATGTTATTGTACCCTACACGACTGACGACACACTCCCTACGCGCCAACGACATAATTCAACCACCACACAAACAACCTCTCCTTCCTCTGCCCCTTTCAATGGCCATCCCCGCCCCTTTCTTCGTCTCTCCAACCGCCGTCACTAACCCCCAACAATCCCCTTCCCTTTCTTTTTATTCTCCTTCCTTTCCCAGAAGAAATTTCACTGCTGTTTCCTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGTCCACTACCGCCGTCAAATCCGATTCTCCGTCCAAAACCTTGCCATTTCGGGTCGGACATGGCTTCGATCTTCATAGGTTGGAACCTGGGTACCCTTTGATTATTGGGGGAATTACCATTCCCCATGATAGAGGCTGCGAAGCTCATTCCGATGGTAATTTCTTTGGTTTCTCTTTTTCCTGTTTTTCTCCGTTGCTGTGCTGCTGATCAAATGGGGAAATTCGTACCTACTTTATTGTGCGTGTTTTAATTCTTTGAATAATTAGCTCAGTTTTGTTGTTGGCTAATCATCCCTTCAATCTAACATTGTATAGTGCTGTTTTAGGGTGTAAAATTGATTGCCCTACTGACGAGATCAGTACTTTTTTGCTTACTGAAAATTTTATGGACTAACTATGGAGAACTATATTTAAAAAGCCATGGGATGTTTTGTCCTAAATAGAACTTGGATATTACTGTTATTATTGCCTACTATTACTCTACTGATTTTGTACCTTTTGGACATTGGAGTGCTGAAGATAAGCTTATTTAAGCCCAGTTATCTGCAATTGATCTATTGAATGGAGCTCCCATCTCATCAAGCTTTTTAGAAGTCTCAACTTTGGTTTCTGTCTCTACAGTATAAAAGTTTCCTGCAACTCTTGTTAAATTTTGAAGTGTTTCTTTATTTTGTTGATTTAGGGGATGTTCTCCTACATTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTCCATCGTCCGTTTTCATCAAAGAAGCTGTAAGTAGTTATGGCATAGCAAATTCATACACACTTACCAAAGTTTGTTATCTTTATATATGAATCGTGTCCTTTTTGACTTATTTAAAATGAGCCACATGGTGCGCTGTACGGATGATTTAGGATTCTATTGTTGCTTTCATACGAGATGTCATGAACTCATGACATATTTTATGCTTGGTTGTTGTTCTCTTTAAAGAGGCCCTCAATAGCATAGTGGATAAACCAAATCACATAACCCTTTCTCAGGTTTCTCAATTTTATTGGTTTCTTTAATACGTATGTGTTATGTCACATAAGAGTTTTATTATCTTTGTTTAATGAATTTTATGAGGGTCATTTCACATGTCGAGTTCTTACTCGGGACCGAAGTAGTGGTTGTGTCAAATTTTATGCATCTCAATGAATTGAGTATATTCAGCATTTTGTTTGTTGGCACGCTTTATGCTTATCTAACAACAGAATGTTCATTGTATCAGTGAAAGAAATGTCAAAGTCTACTAAGTGGACCTTAGATATAGTATTCTCTTTCTTATAATCAACTTCAATTATATTGCATGAACTGGAATAACCATACACTTGCTTCTTTGTTCAAACCCCTTTGTACCATTATACCATTTTATATTTCCTCTGTATAGCTTCATCTTCTAATTACCTAGAGAGAATAAGATTATGTAACAAGTCATACCTGCATGAAATGATATCGTTTCGGATGGGAATTTAAGAATGCATCTCCATAAAGAATGAAGAATCAGTTTATAACAATCTATTAACTCAGTTATATTAAATATCTTTCACTTGTATTAAGAAACAAAGACTCTTATTGAGACAAAGGAAGCGATGCCCAAACAGGGGAGCATAAGAAGCTCTCCAAAACCAAAAGGAACTGCAGAAAGGTTTTCCAATTCACGTGTATGATTGTATCAAAAGAGAAGAAAAGCTGCTAATCGTATATCTTGGGTTTCCCTTTTACCTCTCCCCTTCGAAAGTACATATGTTTCTTTGTACAACAATTCTCACCAAACATCATACACCAAAGGAATCCAAAGAAGCTTTGTCTTCCTGTAGAAACTTCACCCAACAACCCTTTGTTAAAAGAATCTTTGATATCATCTTGAGGACTTCATATCCAATTAAAACTATTGAAAGAAAAAGGAAATCATAAACATGAATGGGGCTCCTGAATTCCGGTCTGGGGAACCTCAGGAGACAGGAAGCATGATGTTGCTCCATTGTCTTATGAATTTCAAAATTCTCCAATGAGAATAAGGCTTGTTGAAGATTATTGCCACCAAACATGGATACGCTTTCACCTGCCATTTTAGGTGCCTGTTGGAGTGCAAGGTGCGCTACTTCGTTTTTTCTATCTTATGAAACATTTTAATGCTTCTTATAAGAATCTCATGTAATATTTAGATTGAGAGGAATTAAAAAAACTTTTAGAGGAGTTGTGAGTCATTCCAGAACTGTGGGCTGGCCGGTTCACCCTCATAAAATTTAAAGAGGATGCATGGATAACTAGTCTAACTTGTCTGGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTCTATTCGGTAACTAAGCATTGATGGAGAGAGAAAAATAATTAAAGAATACAAGGACATACACAAATTTTAGTAGACAGACCGGTGCGACTCCAGTCTAACAAAATAAGCCAAATTAAATAAGTTAAATTGCAAAATCCTTGTACACTGAAAGCCCAAAGATGCGTGGAATCTAACAATGGACCAAACCCTCTTCTCAAGAAGTCTCTGACCTCCCAGCAAATGTCATAACAAAAATATACATAAAATTAGACAAGTTTTGAATTCGTATTAAAGCATATTCTGACCTCAGAGGTGGATGCTTCAACCAGTGTGTCCCTGCTTCCTAGATTATTCTCTTACTCTCAAATGCTTGGATAATTAACTGGATCCACTGGTGCTTTTTGCAAATGCTTAGAGAGTGTATGGAGCCAGTATTATATGGCCATGGTGTAACTTGTACAAATCATCGATTCATAAATTAAATACACGTTACATCAACTTAAGTTTTTCTACTTTAGGTTTCATAAATTCAGGCTCGTTAATCGTGAGCTAATTAACACAACTACCATAGTTTGGCCTAGTGGTCATTGGTCAATAAGGGACAATATAATTAATAAAGGATTTAGTAGGGATGGGTTCAAGTCATAATGACCATCTACATAGGAATTTGATGTCCTACAAGTTACCTTGGCAACTAAATGTAGTAGGGTCAAGTAACTATCCTAAAGAATTATTGAGGTAAGTGCAAGGTGGTGCAAAGACTGACGGATAAAAGAAATCATGAGACAAATGGTCTTGGAGAATCTAAGGGAAAGGTTAATCAATAGTGAGAAACCTTTGATTCATCTACACCATGCTTTGTAGTACTACAATATTTGTTAACTATCATTTAATTTAAAAGTTAAAGTTGATTGGTTATGGTAAAGTTCTCACGTTTTACTATAATATTTGTTAACTATCATTGAATTTAAAAGTTAAGTTGATTGGATATGGTAAAGTTCTCACGTTTTCTTAAATATCAACTCAAGGTCGAACACACGGGACAATTGTGTGAAATGAGAAGAGAATGACATTATAGGATAGGGGGTATGAACTTTGCAGCACTATATTTAATATTTAAAAAGTGATGGCTGATAGGTAGGTTAGGGTACATCTATCTTTTCAATATGTGGTTAGTCAACAAACCTAAGCCTTAAGGCTAAATCTGAATCCACATGTGAGGAGACAGTAGGCCTCTCCCACGAAAATCTGAGGCAAGTGAATCCAATTAGCTAGCCGAAGTCGAATTAAATAGTTCGAATTCAGTGCATTTTAGATAAAAGTTCCATTATCTGATTGGTGAGATGAAATCTTTGCTGTTGTTTTTGGTTGATTCCAGGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACGCATGAGAAAGTCGACAGCCTTGGCGAAAACAGAAGCATTGCTGCTCATACTGTGGTCCTCTTGATGAGCAGATAGAAGTCCTGCCCTGCCCTCCCATTAGTGCTGCTGTGCAAGCGTAATAACAACAGTGCCCCATTTTAAGTGAAATATGCTTTATTGTCAATACTTTGAATTTTCCCCCGCCCCCTCCACAGTAATCTGCAAAGTGCAAACGATTGTAAGTTGGTTGTTGCATTAAACGTTTTAATCATTCAACAACATGAAAAAGAAAATGTTTTGGTGGGAGAATATTAGAAATTGCCTATAATGATTGCTTTTCTTCTTATTTTTCCTTTCCTCATTTTCAATTTTACTTGATTAAACTCTAAACTTGAAGTACATAAATTCCTATGTAATTGTTGAGTCACTATCTTTTGGAAGATTTCTAACTAGG

mRNA sequence

GCATGTTATTGTACCCTACACGACTGACGACACACTCCCTACGCGCCAACGACATAATTCAACCACCACACAAACAACCTCTCCTTCCTCTGCCCCTTTCAATGGCCATCCCCGCCCCTTTCTTCGTCTCTCCAACCGCCGTCACTAACCCCCAACAATCCCCTTCCCTTTCTTTTTATTCTCCTTCCTTTCCCAGAAGAAATTTCACTGCTGTTTCCTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGTCCACTACCGCCGTCAAATCCGATTCTCCGTCCAAAACCTTGCCATTTCGGGTCGGACATGGCTTCGATCTTCATAGGTTGGAACCTGGGTACCCTTTGATTATTGGGGGAATTACCATTCCCCATGATAGAGGCTGCGAAGCTCATTCCGATGGGGATGTTCTCCTACATTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTCCATCGTCCGTTTTCATCAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACGCATGAGAAAGTCGACAGCCTTGGCGAAAACAGAAGCATTGCTGCTCATACTGTGGTCCTCTTGATGAGCAGATAGAAGTCCTGCCCTGCCCTCCCATTAGTGCTGCTGTGCAAGCGTAATAACAACAGTGCCCCATTTTAAGTGAAATATGCTTTATTGTCAATACTTTGAATTTTCCCCCGCCCCCTCCACAGTAATCTGCAAAGTGCAAACGATTGTAAGTTGGTTGTTGCATTAAACGTTTTAATCATTCAACAACATGAAAAAGAAAATGTTTTGGTGGGAGAATATTAGAAATTGCCTATAATGATTGCTTTTCTTCTTATTTTTCCTTTCCTCATTTTCAATTTTACTTGATTAAACTCTAAACTTGAAGTACATAAATTCCTATGTAATTGTTGAGTCACTATCTTTTGGAAGATTTCTAACTAGG

Coding sequence (CDS)

ATGTTATTGTACCCTACACGACTGACGACACACTCCCTACGCGCCAACGACATAATTCAACCACCACACAAACAACCTCTCCTTCCTCTGCCCCTTTCAATGGCCATCCCCGCCCCTTTCTTCGTCTCTCCAACCGCCGTCACTAACCCCCAACAATCCCCTTCCCTTTCTTTTTATTCTCCTTCCTTTCCCAGAAGAAATTTCACTGCTGTTTCCTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGTCCACTACCGCCGTCAAATCCGATTCTCCGTCCAAAACCTTGCCATTTCGGGTCGGACATGGCTTCGATCTTCATAGGTTGGAACCTGGGTACCCTTTGATTATTGGGGGAATTACCATTCCCCATGATAGAGGCTGCGAAGCTCATTCCGATGGGGATGTTCTCCTACATTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTCCATCGTCCGTTTTCATCAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACGCATGAGAAAGTCGACAGCCTTGGCGAAAACAGAAGCATTGCTGCTCATACTGTGGTCCTCTTGATGAGCAGATAG

Protein sequence

MLLYPTRLTTHSLRANDIIQPPHKQPLLPLPLSMAIPAPFFVSPTAVTNPQQSPSLSFYSPSFPRRNFTAVSSSSSLPSFRLNSAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR

Homology

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BLAST of Lsi07G009020 vs. Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-87
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 84  SAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDG 143
           SAAS +V    +V S+ P+KTLPFR+GHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDG
Sbjct: 52  SAASSAVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDG 111

Query: 144 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDAT 203
           DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLM EAGY+IGNLDAT
Sbjct: 112 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDAT 171

Query: 204 LILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 263
           LILQRPK+SPHKE IR+NLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV+LLM +
Sbjct: 172 LILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231

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BLAST of Lsi07G009020 vs. Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-83
Identity = 163/215 (75.81%), Postives = 180/215 (83.72%), Query Frame = 1


Query: 65  RRNF--TAVSSSSSLPSF-RLNSAASPSV-------ASTTAVKSD------SPSKTLPFR 124
           R NF  + V  S + PS+ RL++  S ++       AS  AV+++      +PSK L FR
Sbjct: 22  RENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAVEAEPKFAAVTPSKILSFR 81

Query: 125 VGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFP 184
           VGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFP
Sbjct: 82  VGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFP 141

Query: 185 DSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGA 244
           D+DPKWKGAPSSVFIKEAVRLM EAGY++GNLDATLILQRPK+SPHKEAIR NL +LLGA
Sbjct: 142 DTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLGA 201

Query: 245 DPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 264
           DP VVNLKAKTHEKVDSLGENRSIAAHTVVLLM +
Sbjct: 202 DPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236

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BLAST of Lsi07G009020 vs. Swiss-Prot
Match: ISPF_ORYSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPF PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.4e-80
Identity = 150/197 (76.14%), Postives = 167/197 (84.77%), Query Frame = 1


Query: 72  SSSSSLPSFRLN-----SAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLII 131
           S+S + PS RL      +AA+       AV +      LPFRVGHGFDLHRLEPG PLII
Sbjct: 26  SASPARPSLRLRRPSTLAAAAVQAEHQPAVAAAPKPPALPFRVGHGFDLHRLEPGLPLII 85

Query: 132 GGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 191
           GGI IPHDRGC+AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDP+WKGA SSVF++EA
Sbjct: 86  GGIDIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPRWKGADSSVFMREA 145

Query: 192 VRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSL 251
           V+LMHEAGY++GNLDATLILQ+PK+SP KE IR+NL +LLGADPSVVNLKAKTHEKVDSL
Sbjct: 146 VKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKVDSL 205

Query: 252 GENRSIAAHTVVLLMSR 264
           GENRSIAAHTVVLLM +
Sbjct: 206 GENRSIAAHTVVLLMRK 222

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BLAST of Lsi07G009020 vs. Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.0e-43
Identity = 79/155 (50.97%), Postives = 109/155 (70.32%), Query Frame = 1


Query: 108 RVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 167
           R+GHG+D+H  + G  +++GG+ IPH +   AHSDGDVL+H + DA+LGA  L DIG+ F
Sbjct: 5   RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHF 64

Query: 168 PDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLG 227
           PD+DP +KGA S V ++  V L+HE GY +GN+DAT+I Q PK++PH EA+RANL++ LG
Sbjct: 65  PDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLG 124

Query: 228 ADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMS 263
                VN+KA T E++   G    IAAH V L+ S
Sbjct: 125 VALECVNVKATTTERLGFAGREEGIAAHAVALIES 159

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BLAST of Lsi07G009020 vs. Swiss-Prot
Match: ISPF_CUPMC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=ispF PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 9.1e-43
Identity = 83/156 (53.21%), Postives = 108/156 (69.23%), Query Frame = 1


Query: 108 RVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 167
           R+G G+D+H L PG  LI+GG+ IPHDRG   HSD D LLH V DA+ GA  L DIG+ F
Sbjct: 7   RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHF 66

Query: 168 PDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLG 227
           PD+DP + GA S V ++EAVR + EAGY+IGN+DAT+I Q+PKL+PH   + ANL+E LG
Sbjct: 67  PDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLG 126

Query: 228 ADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 264
              +  N+KAKT+EK+   G+   I A   VL+  R
Sbjct: 127 LPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162

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BLAST of Lsi07G009020 vs. TrEMBL
Match: A0A0A0KWV1_CUCSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_4G049620 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 5.6e-108
Identity = 205/233 (87.98%), Postives = 211/233 (90.56%), Query Frame = 1


Query: 34  MAIPAPFFVSPTAVTNPQQSPSLSFYSPSFPRRNFTAV---SSSSSLPSFRLNSAASPSV 93
           MA+ AP F SP A T   QS SLS Y PSFP   FT +   SSSSSLPSFR+NSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 94  ASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCV 153
           +STTA+KSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHCV
Sbjct: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120

Query: 154 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 213
           VDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGYDIGNLDATLILQRPK
Sbjct: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180

Query: 214 LSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 264
           LSPHKEAIRA LSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM R
Sbjct: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]

BLAST of Lsi07G009020 vs. TrEMBL
Match: A0A0D2QHJ5_GOSRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=B456_003G085800 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 3.1e-90
Identity = 172/205 (83.90%), Postives = 181/205 (88.29%), Query Frame = 1


Query: 62  SFPRRNFTAVSSSSSLPSFRLNSAASPSVASTTA---VKSDSPSKTLPFRVGHGFDLHRL 121
           S  RR+ T VSSSSS  SF L ++ S +  ST     + S  PSK+LPFRVGHGFDLHRL
Sbjct: 33  SITRRHTTLVSSSSSSSSFTLRASVSSAATSTAVDGTISSTKPSKSLPFRVGHGFDLHRL 92

Query: 122 EPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 181
           EPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP
Sbjct: 93  EPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 152

Query: 182 SSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAK 241
           SSVFIKEAVRLMHEAGY+IGNLDATLILQRPKLSPHK  I+ANLSELLGADPSVVNLKAK
Sbjct: 153 SSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKGVIKANLSELLGADPSVVNLKAK 212

Query: 242 THEKVDSLGENRSIAAHTVVLLMSR 264
           THEKVDSLGENRSIAAHTVVLLM +
Sbjct: 213 THEKVDSLGENRSIAAHTVVLLMRK 237

[Close]

BLAST of Lsi07G009020 vs. TrEMBL
Match: B9GKD1_POPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Populus trichocarpa GN=POPTR_0001s09860g PE=3 SV=2)

HSP 1 Score: 335.1 bits (858), Expect = 7.6e-89
Identity = 165/183 (90.16%), Postives = 171/183 (93.44%), Query Frame = 1


Query: 87  SPSVASTTAVKSDSP------SKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAH 146
           S S ASTTA++ D P      SKTLPFRVGHGFDLHRLEPGYPLIIGGI +PHDRGCEAH
Sbjct: 53  SISAASTTAIQVDGPTTSSKASKTLPFRVGHGFDLHRLEPGYPLIIGGIDVPHDRGCEAH 112

Query: 147 SDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNL 206
           SDGDVLLHCVVDA+LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGY+IGNL
Sbjct: 113 SDGDVLLHCVVDAVLGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNL 172

Query: 207 DATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 264
           DATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL
Sbjct: 173 DATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 232

[Close]

BLAST of Lsi07G009020 vs. TrEMBL
Match: A0A0D2NYC9_GOSRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=B456_003G085800 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.8e-88
Identity = 171/205 (83.41%), Postives = 180/205 (87.80%), Query Frame = 1


Query: 62  SFPRRNFTAVSSSSSLPSFRLNSAASPSVASTTA---VKSDSPSKTLPFRVGHGFDLHRL 121
           S  RR+ T VSSSSS  SF L ++ S +  ST     + S  PSK+LPFRVGHGFDLHRL
Sbjct: 33  SITRRHTTLVSSSSSSSSFTLRASVSSAATSTAVDGTISSTKPSKSLPFRVGHGFDLHRL 92

Query: 122 EPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 181
           EPGYPLIIGGI IPHDRGCEAHSD DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP
Sbjct: 93  EPGYPLIIGGIDIPHDRGCEAHSD-DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 152

Query: 182 SSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAK 241
           SSVFIKEAVRLMHEAGY+IGNLDATLILQRPKLSPHK  I+ANLSELLGADPSVVNLKAK
Sbjct: 153 SSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKGVIKANLSELLGADPSVVNLKAK 212

Query: 242 THEKVDSLGENRSIAAHTVVLLMSR 264
           THEKVDSLGENRSIAAHTVVLLM +
Sbjct: 213 THEKVDSLGENRSIAAHTVVLLMRK 236

[Close]

BLAST of Lsi07G009020 vs. TrEMBL
Match: A0A061G6M7_THECC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_016340 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 6.5e-88
Identity = 173/225 (76.89%), Postives = 186/225 (82.67%), Query Frame = 1


Query: 43  SPTAVTNPQ-QSPSLSFYSPSFPRRNFTAVSSSSSLPSFRLNSAASP---SVASTTAVKS 102
           +PT ++N     P+    +         + SSSSS  +F L ++ SP   SVA      S
Sbjct: 132 TPTTISNKSILLPNPRIITARHHNNILQSASSSSSSSAFTLTASISPGATSVAVDGPTTS 191

Query: 103 DSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGAL 162
             PSK+LPFRVGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGAL
Sbjct: 192 TKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGAL 251

Query: 163 GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAI 222
           GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHE GY+IGNLDATLILQRPKLSPHKEAI
Sbjct: 252 GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEVGYEIGNLDATLILQRPKLSPHKEAI 311

Query: 223 RANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 264
           +ANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM +
Sbjct: 312 KANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 356

[Close]

BLAST of Lsi07G009020 vs. TAIR10
Match: AT1G63970.1 (AT1G63970.1 isoprenoid F)

HSP 1 Score: 324.3 bits (830), Expect = 6.8e-89
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 84  SAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDG 143
           SAAS +V    +V S+ P+KTLPFR+GHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDG
Sbjct: 52  SAASSAVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDG 111

Query: 144 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDAT 203
           DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLM EAGY+IGNLDAT
Sbjct: 112 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDAT 171

Query: 204 LILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 263
           LILQRPK+SPHKE IR+NLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV+LLM +
Sbjct: 172 LILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231

[Close]

BLAST of Lsi07G009020 vs. NCBI nr
Match: gi|659102205|ref|XP_008452007.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 418.3 bits (1074), Expect = 9.9e-114
Identity = 210/230 (91.30%), Postives = 217/230 (94.35%), Query Frame = 1


Query: 34  MAIPAPFFVSPTAVTNPQQSPSLSFYSPSFPRRNFTAVSSSSSLPSFRLNSAASPSVAST 93
           MA+ APFF SP A T   QSPSLSFY PSFPRR FT +SSSSSLPSFR+NSA S SV+ST
Sbjct: 1   MAVSAPFFASPPAATTSHQSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSST 60

Query: 94  TAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDA 153
           TA++SDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHCVVDA
Sbjct: 61  TAIESDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDA 120

Query: 154 ILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSP 213
           ILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSP
Sbjct: 121 ILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSP 180

Query: 214 HKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 264
           HKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM R
Sbjct: 181 HKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]

BLAST of Lsi07G009020 vs. NCBI nr
Match: gi|449457594|ref|XP_004146533.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 398.7 bits (1023), Expect = 8.1e-108
Identity = 205/233 (87.98%), Postives = 211/233 (90.56%), Query Frame = 1


Query: 34  MAIPAPFFVSPTAVTNPQQSPSLSFYSPSFPRRNFTAV---SSSSSLPSFRLNSAASPSV 93
           MA+ AP F SP A T   QS SLS Y PSFP   FT +   SSSSSLPSFR+NSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 94  ASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCV 153
           +STTA+KSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHCV
Sbjct: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120

Query: 154 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 213
           VDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGYDIGNLDATLILQRPK
Sbjct: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180

Query: 214 LSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 264
           LSPHKEAIRA LSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM R
Sbjct: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]

BLAST of Lsi07G009020 vs. NCBI nr
Match: gi|823141444|ref|XP_012470543.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Gossypium raimondii])

HSP 1 Score: 339.7 bits (870), Expect = 4.5e-90
Identity = 172/205 (83.90%), Postives = 181/205 (88.29%), Query Frame = 1


Query: 62  SFPRRNFTAVSSSSSLPSFRLNSAASPSVASTTA---VKSDSPSKTLPFRVGHGFDLHRL 121
           S  RR+ T VSSSSS  SF L ++ S +  ST     + S  PSK+LPFRVGHGFDLHRL
Sbjct: 33  SITRRHTTLVSSSSSSSSFTLRASVSSAATSTAVDGTISSTKPSKSLPFRVGHGFDLHRL 92

Query: 122 EPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 181
           EPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP
Sbjct: 93  EPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 152

Query: 182 SSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAK 241
           SSVFIKEAVRLMHEAGY+IGNLDATLILQRPKLSPHK  I+ANLSELLGADPSVVNLKAK
Sbjct: 153 SSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKGVIKANLSELLGADPSVVNLKAK 212

Query: 242 THEKVDSLGENRSIAAHTVVLLMSR 264
           THEKVDSLGENRSIAAHTVVLLM +
Sbjct: 213 THEKVDSLGENRSIAAHTVVLLMRK 237

[Close]

BLAST of Lsi07G009020 vs. NCBI nr
Match: gi|566148157|ref|XP_002298012.2| (hypothetical protein POPTR_0001s09860g [Populus trichocarpa])

HSP 1 Score: 335.1 bits (858), Expect = 1.1e-88
Identity = 165/183 (90.16%), Postives = 171/183 (93.44%), Query Frame = 1


Query: 87  SPSVASTTAVKSDSP------SKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAH 146
           S S ASTTA++ D P      SKTLPFRVGHGFDLHRLEPGYPLIIGGI +PHDRGCEAH
Sbjct: 53  SISAASTTAIQVDGPTTSSKASKTLPFRVGHGFDLHRLEPGYPLIIGGIDVPHDRGCEAH 112

Query: 147 SDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNL 206
           SDGDVLLHCVVDA+LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGY+IGNL
Sbjct: 113 SDGDVLLHCVVDAVLGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNL 172

Query: 207 DATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 264
           DATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL
Sbjct: 173 DATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 232

[Close]

BLAST of Lsi07G009020 vs. NCBI nr
Match: gi|763751745|gb|KJB19133.1| (hypothetical protein B456_003G085800 [Gossypium raimondii])

HSP 1 Score: 332.8 bits (852), Expect = 5.4e-88
Identity = 171/205 (83.41%), Postives = 180/205 (87.80%), Query Frame = 1


Query: 62  SFPRRNFTAVSSSSSLPSFRLNSAASPSVASTTA---VKSDSPSKTLPFRVGHGFDLHRL 121
           S  RR+ T VSSSSS  SF L ++ S +  ST     + S  PSK+LPFRVGHGFDLHRL
Sbjct: 33  SITRRHTTLVSSSSSSSSFTLRASVSSAATSTAVDGTISSTKPSKSLPFRVGHGFDLHRL 92

Query: 122 EPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 181
           EPGYPLIIGGI IPHDRGCEAHSD DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP
Sbjct: 93  EPGYPLIIGGIDIPHDRGCEAHSD-DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 152

Query: 182 SSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAK 241
           SSVFIKEAVRLMHEAGY+IGNLDATLILQRPKLSPHK  I+ANLSELLGADPSVVNLKAK
Sbjct: 153 SSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKGVIKANLSELLGADPSVVNLKAK 212

Query: 242 THEKVDSLGENRSIAAHTVVLLMSR 264
           THEKVDSLGENRSIAAHTVVLLM +
Sbjct: 213 THEKVDSLGENRSIAAHTVVLLMRK 236

The following BLAST results are available for this feature:

BLAST of Lsi07G009020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ISPF_ARATH	1.2e-87	87.22	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop...	[more]
ISPF_CATRO	1.1e-83	75.81	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan...	[more]
ISPF_ORYSJ	2.4e-80	76.14	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa...	[more]
ISPF_THISH	7.0e-43	50.97	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfid...	[more]
ISPF_CUPMC	9.1e-43	53.21	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidura...	[more]

BLAST of Lsi07G009020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWV1_CUCSA	5.6e-108	87.98	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_...	[more]
A0A0D2QHJ5_GOSRA	3.1e-90	83.90	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=...	[more]
B9GKD1_POPTR	7.6e-89	90.16	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Populus trichocarpa GN=...	[more]
A0A0D2NYC9_GOSRA	3.8e-88	83.41	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=...	[more]
A0A061G6M7_THECC	6.5e-88	76.89	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_...	[more]

BLAST of Lsi07G009020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63970.1	6.8e-89	87.22	isoprenoid F	[more]

BLAST of Lsi07G009020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102205\|ref\|XP_008452007.1\|	9.9e-114	91.30	PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ...	[more]
gi\|449457594\|ref\|XP_004146533.1\|	8.1e-108	87.98	PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ...	[more]
gi\|823141444\|ref\|XP_012470543.1\|	4.5e-90	83.90	PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-...	[more]
gi\|566148157\|ref\|XP_002298012.2\|	1.1e-88	90.16	hypothetical protein POPTR_0001s09860g [Populus trichocarpa]	[more]
gi\|763751745\|gb\|KJB19133.1\|	5.4e-88	83.41	hypothetical protein B456_003G085800 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0016114	terpenoid biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR020555	MECDP_synthase_CS
IPR003526	MECDP_synthase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009637	response to blue light
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009744	response to sucrose
biological_process	GO:0010114	response to red light
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010218	response to far red light
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G009020.1	Lsi07G009020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	GENE3D	G3DSA:3.30.1330.50		coord: 105..261 score: 4.1
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	HAMAP	MF_00107	IspF	coord: 107..262 score: 32
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	PFAM	PF02542	YgbB	coord: 107..260 score: 5.0
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	TIGRFAMs	TIGR00151	TIGR00151	coord: 108..261 score: 2.1
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	unknown	SSF69765	IpsF-like	coord: 106..261 score: 1.31
IPR020555	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site	PROSITE	PS01350	ISPF	coord: 141..156 scor
None	No IPR available	PANTHER	PTHR32125	FAMILY NOT NAMED	coord: 101..261 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G009020	Csa4G049620	Cucumber (Chinese Long) v2	culsiB306
Lsi07G009020	CSPI04G05930	Wild cucumber (PI 183967)	cpilsiB306
Lsi07G009020	Cucsa.106950	Cucumber (Gy14) v1	cgylsiB141
Lsi07G009020	CmaCh04G007250	Cucurbita maxima (Rimu)	cmalsiB700
Lsi07G009020	CmoCh04G007690	Cucurbita moschata (Rifu)	cmolsiB694
Lsi07G009020	Cla014654	Watermelon (97103) v1	lsiwmB446
Lsi07G009020	MELO3C016339	Melon (DHL92) v3.5.1	lsimeB457
Lsi07G009020	ClCG07G007880	Watermelon (Charleston Gray)	lsiwcgB415
Lsi07G009020	MELO3C016339.2	Melon (DHL92) v3.6.1	lsimedB475
Lsi07G009020	Cla97C07G135070	Watermelon (97103) v2	lsiwmbB414
Lsi07G009020	Bhi01G001788	Wax gourd	lsiwgoB556
Lsi07G009020	Cp4.1LG01g00240	Cucurbita pepo (Zucchini)	cpelsiB379
Lsi07G009020	CsGy4G005800	Cucumber (Gy14) v2	cgyblsiB280
Lsi07G009020	Carg14122	Silver-seed gourd	carlsiB860
Lsi07G009020	CsaV3_4G006100	Cucumber (Chinese Long) v3	cuclsiB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G009020	Cucurbita maxima (Rimu)	cmalsiB328
Lsi07G009020	Cucurbita moschata (Rifu)	cmolsiB317
Lsi07G009020	Cucurbita pepo (Zucchini)	cpelsiB187
Lsi07G009020	Silver-seed gourd	carlsiB535