CmaCh04G007250 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G007250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
LocationCma_Chr04 : 3687633 .. 3690432 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAGTTAAAAATGAGGATAACAAGTTTACTATTTTGGGGTACCGAGCATCCGTTTAAGGTAATGCGATAATTAGTGAAGAGCTGGCAGTCATGCCCACCCCCAAGCGGCTCGGTTCCTGCGCACCCTTTTCTCCGCCACCAACACAAGTCAACCACACAACCCAGCTCCACTCACCTCCTCTTCGCTTACCCTTTCCATGGCTGTCCCCTTCCCCATCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGCTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGACGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCCTCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGCTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAAGCTCATTCTGATGGTAATCTCTTTGCTTCTAGTTTGTTTTCCTGTTTCTGTGTTCTTGTTGGTTGCTGTTCTGTTCTGCTGAAGAGTTAGGGAATCTTCTTACGAACTTAATTGTGTGTATTCTAATTCTTTAAATAATAAGCTCACTTTTGTTGGTTTCATTAATTTCTTGATTGCAGCAATGACGAATTCTAAATTTCTACATGGAATGAGGGAATTTTATATCTAAAAACTTTTAAATTTTGAAGTGGTTCTTTGTTTTGTTGATTTAGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTAAGTAGTTCTGGCATACCAAATTCAAACTCACTGCCAAGTTTTGTTATGTTTATATATTAATATATCCTCTTTGCCTTGATTAATTTAAAATGATCTTAGGATTCTCTAGTTGCTTTGCTTTCATACTGGATATTATGATACCTTTATGTTTGCTTGAAGTTCACTTTAGGGGGACTAGTATGACCAATAATAAGATGATGAAAAGTATAAGAAAGTAGAGCTTTTATTTGAGATTGTAGGGGAAAATGAATGCCTTTTAGAGAATATTAATGAATTTCTTCGTTAAAAGAAAGAAAAATTGATATGAAAGTTGTTGGAAGACAGGCTTTGTGAGATCACACGTCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAAGGCGTGGAAACCTCTCCCTAGTAGACGTGTCTTAAAAACCTTGAGGGCAAATCCAAAAGGGAAAGCCCAAAGAGAACAATGTTTGCTAACGGTGGGCTTGCACCGCTACAAATGGTATTAGAGCCGGACACTGGGCGATGTGCTAGTGGAAGGCTGAGCCCCGAAGGAAGGTGGACACGAGGCGGTGTGCCAGCGAGGAGTTGGGCCCCAAAAGAGGGTGGATTGTGAGATCTCACATCGGTTGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTGAGGAGAAGTCCGAAAAGAAAAGCCCAAAGAAGGCAATATCTGCTAGCGGTGGACTTTTCCGATTCACATTTGTATCAAAAGAGAAGAAAAGCTGCAAATCTTATAACCTTGGATTTCCCTTTTACTTCCCCCTCCGAAAAGTACCATATGTTTCTTTGGCAACTAAATGTAGTAGGGTCATGTGGCTGTCTTGTGTGAAATATTTTGGTGCACGTAAGCTAGTTTGGTCACTCATAGATAAAAGATCTAGGTGCATGTAAGCTAGCTTGGACACTCATAGATAAAAGATATAGGTGCACGTAAGTTAGCTTGGACACTCATAGATAAAAGATCTAGGTGCACGTAAGTTAGCTTGGACACTCATAGATAAAAGATCTAGGTGCTCGTAAGCTAGCTTGGACACTCGCAGATAAAGAAAAGAAGGGTGAGGTAAACACCCCTAATGAGTCTCAGGGAAAGGTAATCAATAATGAGAGACCTTTGTTTCACCTGCTTTGTAGTTCTTCAATTTTTGTTAAACTATTGATTCGTGTGTGCTTAAATATCATCCCAAACTGTTCATTTCAATTATTTCGACTTGGGGTTACGACCTTGGGGAATCACTGGAACATTTTTCAGTCTAAAATAGACAGAATTCAAACTGTTCATTTTGACTTCGGGTTACTTGATGGATTCACCTAGTAACTAGAAGTCAAAATGAAGTGAACAGTTTGATTGATGAGGAAGTTTGGTTTTAATTTTGGGTGATATTCCAGGTGAGACTGATGCATGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCCAATCTTCTTGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATCTGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTGATCATTCAACAACGTTAAAATGAAAATGATATGGTCAACATTAGAAATTGGCTACAATG

mRNA sequence

CATAGTTAAAAATGAGGATAACAAGTTTACTATTTTGGGGTACCGAGCATCCGTTTAAGGTAATGCGATAATTAGTGAAGAGCTGGCAGTCATGCCCACCCCCAAGCGGCTCGGTTCCTGCGCACCCTTTTCTCCGCCACCAACACAAGTCAACCACACAACCCAGCTCCACTCACCTCCTCTTCGCTTACCCTTTCCATGGCTGTCCCCTTCCCCATCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGCTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGACGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCCTCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGCTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAAGCTCATTCTGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCCAATCTTCTTGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATCTGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTGATCATTCAACAACGTTAAAATGAAAATGATATGGTCAACATTAGAAATTGGCTACAATG

Coding sequence (CDS)

ATGGCTGTCCCCTTCCCCATCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGCTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGACGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCCTCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGCTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAAGCTCATTCTGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCCAATCTTCTTGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAG

Protein sequence

MAVPFPIFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVDAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Homology
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BLAST of CmaCh04G007250 vs. Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 6.0e-86
Identity = 161/197 (81.73%), Postives = 173/197 (87.82%), Query Frame = 1 

Query: 40  SSSSRPSIRVNSAASPSVDAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSL 219
           VRLM EAGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGAD SVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 231

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BLAST of CmaCh04G007250 vs. Swiss-Prot
Match: ISPF_ORYSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPF PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 6.2e-83
Identity = 155/200 (77.50%), Postives = 176/200 (88.00%), Query Frame = 1 

Query: 39  SSSSSRPSIRVNSAASPSVDAATAVDSDR--AAASDSRSKALPFRIGHGFDLHRLEPGYP 98
           S+S +RPS+R+     PS  AA AV ++   A A+  +  ALPFR+GHGFDLHRLEPG P
Sbjct: 26  SASPARPSLRLRR---PSTLAAAAVQAEHQPAVAAAPKPPALPFRVGHGFDLHRLEPGLP 85

Query: 99  LIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI 158
           LIIGGI+IPHDRGC+AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDP+WKGA SSVF+
Sbjct: 86  LIIGGIDIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPRWKGADSSVFM 145

Query: 159 KEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKV 218
           +EAV+LMHEAGYE+GNLDATLILQ+PK+SP KE IR+NL +LLGAD SVVNLKAKTHEKV
Sbjct: 146 REAVKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKV 205

Query: 219 DSLGENRSIAAHTVVLLMRR 237
           DSLGENRSIAAHTVVLLMR+
Sbjct: 206 DSLGENRSIAAHTVVLLMRK 222

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BLAST of CmaCh04G007250 vs. Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 8.1e-83
Identity = 165/233 (70.82%), Postives = 188/233 (80.69%), Query Frame = 1 

Query: 14  ATTSHQSLSLSVYPRSFPRTNF--NVVSSSSSRPS-IRVNSAASPSVD-------AATAV 73
           AT+ + S ++     +  R NF  + V  S + PS IR+++  S ++        +  AV
Sbjct: 4   ATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAV 63

Query: 74  DSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV 133
           +++   A+ + SK L FR+GHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV
Sbjct: 64  EAEPKFAAVTPSKILSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV 123

Query: 134 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPK 193
           VDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLM EAGYE+GNLDATLILQRPK
Sbjct: 124 VDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPK 183

Query: 194 LSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           +SPHKEAIR NL  LLGAD  VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 184 VSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236

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BLAST of CmaCh04G007250 vs. Swiss-Prot
Match: ISPF_CUPMC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=ispF PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.8e-43
Identity = 85/156 (54.49%), Postives = 109/156 (69.87%), Query Frame = 1 

Query: 81  RIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140
           RIG G+D+H L PG  LI+GG++IPHDRG   HSD D LLH V DA+ GA  L DIG+ F
Sbjct: 7   RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHF 66

Query: 141 PDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLG 200
           PD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+PH   + ANL+  LG
Sbjct: 67  PDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLG 126

Query: 201 ADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
              +  N+KAKT+EK+   G+   I A   VL+ RR
Sbjct: 127 LPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162

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BLAST of CmaCh04G007250 vs. Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.2e-43
Identity = 79/153 (51.63%), Postives = 108/153 (70.59%), Query Frame = 1 

Query: 81  RIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140
           RIGHG+D+H  + G  +++GG+ IPH +   AHSDGDVL+H + DA+LGA  L DIG+ F
Sbjct: 5   RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHF 64

Query: 141 PDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLG 200
           PD+DP +KGA S V ++  V L+HE GY +GN+DAT+I Q PK++PH EA+RANL++ LG
Sbjct: 65  PDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLG 124

Query: 201 ADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 234
                VN+KA T E++   G    IAAH V L+
Sbjct: 125 VALECVNVKATTTERLGFAGREEGIAAHAVALI 157

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BLAST of CmaCh04G007250 vs. TrEMBL
Match: A0A0A0KWV1_CUCSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_4G049620 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 7.1e-102
Identity = 199/239 (83.26%), Postives = 208/239 (87.03%), Query Frame = 1 

Query: 1   MAVPFPIFASATTATTSHQSLSLSVYPRSFPRTNFNVVSS---SSSRPSIRVNSAASPSV 60
           MA+  P+FAS   ATTSHQSLSLS+YP SFP T F  +SS   SSS PS RVNSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  DAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGD 120
            + TA+ SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGD
Sbjct: 61  SSTTAIKSD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGD 120

Query: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATL 180
           VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGY+IGNLDATL
Sbjct: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATL 180

Query: 181 ILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           ILQRPKLSPHKEAIRA LS LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 ILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

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BLAST of CmaCh04G007250 vs. TrEMBL
Match: W9SB94_9ROSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus notabilis GN=L484_006708 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.4e-89
Identity = 179/237 (75.53%), Postives = 200/237 (84.39%), Query Frame = 1 

Query: 7   IFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRP-SIRVNS------AASPSVDA 66
           ++AS+    +S +  SLS +PRS   T  N  +  SS P S+R++S      +A PS  A
Sbjct: 8   LYASSLLPKSSAKYPSLSSFPRSSLFTPPNSTNLFSSSPLSLRLSSTTTPPPSAVPSASA 67

Query: 67  ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVL 126
           A A+++  + AS +  K+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSDGDVL
Sbjct: 68  AAALEAQPSPASATPLKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVL 127

Query: 127 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 186
           LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL
Sbjct: 128 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 187

Query: 187 QRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           QRPKLSPHKEAIRANLS LLGAD +VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 188 QRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 244

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BLAST of CmaCh04G007250 vs. TrEMBL
Match: A0A0M3SH19_MORAL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.6e-88
Identity = 177/241 (73.44%), Postives = 198/241 (82.16%), Query Frame = 1 

Query: 7   IFASATTATTSHQSLSLSVYPRS--FPRTNFNVVSSSSSRPSIRVNSAASPSVDA----- 66
           ++AS+    ++ +S SLS +PRS  F   N      SSS  S+R +S  +P   A     
Sbjct: 8   LYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSAVPSAS 67

Query: 67  ----ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSD 126
               A A+++  + AS + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSD
Sbjct: 68  ANATAAALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSD 127

Query: 127 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDA 186
           GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI+EAVRLMHEAGYEIGNLDA
Sbjct: 128 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYEIGNLDA 187

Query: 187 TLILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 237
           TLILQRPKLSPHKEAIRANLS LLGAD +VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR
Sbjct: 188 TLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 247

[Close]
BLAST of CmaCh04G007250 vs. TrEMBL
Match: B9GKD1_POPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Populus trichocarpa GN=POPTR_0001s09860g PE=3 SV=2)

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87
Identity = 165/229 (72.05%), Postives = 190/229 (82.97%), Query Frame = 1 

Query: 8   FASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVDAATAVDSDR 67
           ++  TT T +++S+S+ + P ++   +         R ++ +++A++      TA+  D 
Sbjct: 13  YSPITTKTRNNKSVSIPLQPGAYISRHVKFAVPIQKRTTLSISAAST------TAIQVDG 72

Query: 68  AAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAI 127
              S   SK LPFR+GHGFDLHRLEPGYPLIIGGI++PHDRGCEAHSDGDVLLHCVVDA+
Sbjct: 73  PTTSSKASKTLPFRVGHGFDLHRLEPGYPLIIGGIDVPHDRGCEAHSDGDVLLHCVVDAV 132

Query: 128 LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPH 187
           LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPH
Sbjct: 133 LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPH 192

Query: 188 KEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           KEAIRANLS LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLM++
Sbjct: 193 KEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMKK 235

[Close]
BLAST of CmaCh04G007250 vs. TrEMBL
Match: A0A061G6M7_THECC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_016340 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.8e-87
Identity = 176/234 (75.21%), Postives = 191/234 (81.62%), Query Frame = 1 

Query: 7   IFASATTATTSHQSLSLSVYPRSFPRTNFNVV----SSSSSRPSIRVNSAASPSVDAATA 66
           I A  T  T S++S+ L   PR     + N +    SSSSS  +  + ++ SP    AT+
Sbjct: 127 IIAKPTPTTISNKSILLP-NPRIITARHHNNILQSASSSSSSSAFTLTASISPG---ATS 186

Query: 67  VDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHC 126
           V  D    S   SK+LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHC
Sbjct: 187 VAVDGPTTSTKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHC 246

Query: 127 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRP 186
           VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHE GYEIGNLDATLILQRP
Sbjct: 247 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEVGYEIGNLDATLILQRP 306

Query: 187 KLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           KLSPHKEAI+ANLS LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 307 KLSPHKEAIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 356

[Close]
BLAST of CmaCh04G007250 vs. TAIR10
Match: AT1G63970.1 (AT1G63970.1 isoprenoid F)

HSP 1 Score: 318.5 bits (815), Expect = 3.4e-87
Identity = 161/197 (81.73%), Postives = 173/197 (87.82%), Query Frame = 1 

Query: 40  SSSSRPSIRVNSAASPSVDAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSL 219
           VRLM EAGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGAD SVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 231

[Close]
BLAST of CmaCh04G007250 vs. NCBI nr
Match: gi|659102205|ref|XP_008452007.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 384.0 bits (985), Expect = 1.8e-103
Identity = 200/236 (84.75%), Postives = 207/236 (87.71%), Query Frame = 1 

Query: 1   MAVPFPIFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVDAA 60
           MAV  P FAS   ATTSHQS SLS YP SFPR  F  +SSSSS PS RVNSA S SV + 
Sbjct: 1   MAVSAPFFASPPAATTSHQSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSST 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TA++SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLL
Sbjct: 61  TAIESD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGY+IGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           RPKLSPHKEAIRANLS LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]
BLAST of CmaCh04G007250 vs. NCBI nr
Match: gi|449457594|ref|XP_004146533.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 1.0e-101
Identity = 199/239 (83.26%), Postives = 208/239 (87.03%), Query Frame = 1 

Query: 1   MAVPFPIFASATTATTSHQSLSLSVYPRSFPRTNFNVVSS---SSSRPSIRVNSAASPSV 60
           MA+  P+FAS   ATTSHQSLSLS+YP SFP T F  +SS   SSS PS RVNSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  DAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGD 120
            + TA+ SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGD
Sbjct: 61  SSTTAIKSD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGD 120

Query: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATL 180
           VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGY+IGNLDATL
Sbjct: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATL 180

Query: 181 ILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           ILQRPKLSPHKEAIRA LS LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 ILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of CmaCh04G007250 vs. NCBI nr
Match: gi|703160811|ref|XP_010112628.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Morus notabilis])

HSP 1 Score: 336.7 bits (862), Expect = 3.4e-89
Identity = 179/237 (75.53%), Postives = 200/237 (84.39%), Query Frame = 1 

Query: 7   IFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRP-SIRVNS------AASPSVDA 66
           ++AS+    +S +  SLS +PRS   T  N  +  SS P S+R++S      +A PS  A
Sbjct: 8   LYASSLLPKSSAKYPSLSSFPRSSLFTPPNSTNLFSSSPLSLRLSSTTTPPPSAVPSASA 67

Query: 67  ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVL 126
           A A+++  + AS +  K+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSDGDVL
Sbjct: 68  AAALEAQPSPASATPLKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVL 127

Query: 127 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 186
           LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL
Sbjct: 128 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 187

Query: 187 QRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           QRPKLSPHKEAIRANLS LLGAD +VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 188 QRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 244

[Close]
BLAST of CmaCh04G007250 vs. NCBI nr
Match: gi|720017076|ref|XP_010261353.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 336.3 bits (861), Expect = 4.4e-89
Identity = 185/243 (76.13%), Postives = 203/243 (83.54%), Query Frame = 1 

Query: 1   MAVPFPIFASATTA-TTSHQSLSLSVYPRSF-PRTNFNVVS----SSSSRPSIRVNSAAS 60
           MA+  PIFAS   A TT+  +L L +   SF P  N +  S    SSSSRPS+   S+ S
Sbjct: 1   MAMASPIFASVIPAKTTAKPTLFLPIASSSFRPCNNGSHFSPGRVSSSSRPSL---SSIS 60

Query: 61  PSVDA-ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAH 120
           P   A AT+V+ ++   S + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPHDRGCEAH
Sbjct: 61  PLTAASATSVEVEKEPTSRNSSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAH 120

Query: 121 SDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNL 180
           SDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGA SSVFIKEAVRLMHEAGYE+GNL
Sbjct: 121 SDGDVLLHCVVDAILGALGLPDIGQIFPDNDPKWKGAASSVFIKEAVRLMHEAGYELGNL 180

Query: 181 DATLILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 237
           DATLILQRPKLSPHKEAI+ANLS LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLL
Sbjct: 181 DATLILQRPKLSPHKEAIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 240

[Close]
BLAST of CmaCh04G007250 vs. NCBI nr
Match: gi|927030530|gb|ALD62475.1| (2-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase [Morus alba])

HSP 1 Score: 333.2 bits (853), Expect = 3.7e-88
Identity = 177/241 (73.44%), Postives = 198/241 (82.16%), Query Frame = 1 

Query: 7   IFASATTATTSHQSLSLSVYPRS--FPRTNFNVVSSSSSRPSIRVNSAASPSVDA----- 66
           ++AS+    ++ +S SLS +PRS  F   N      SSS  S+R +S  +P   A     
Sbjct: 8   LYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSAVPSAS 67

Query: 67  ----ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSD 126
               A A+++  + AS + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSD
Sbjct: 68  ANATAAALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSD 127

Query: 127 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDA 186
           GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI+EAVRLMHEAGYEIGNLDA
Sbjct: 128 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYEIGNLDA 187

Query: 187 TLILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 237
           TLILQRPKLSPHKEAIRANLS LLGAD +VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR
Sbjct: 188 TLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 247

The following BLAST results are available for this feature:
BLAST of CmaCh04G007250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ISPF_ARATH6.0e-8681.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop... [more]
ISPF_ORYSJ6.2e-8377.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa... [more]
ISPF_CATRO8.1e-8370.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan... [more]
ISPF_CUPMC2.8e-4354.492-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidura... [more]
ISPF_THISH8.2e-4351.632-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfid... [more]
BLAST of CmaCh04G007250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWV1_CUCSA7.1e-10283.262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_... [more]
W9SB94_9ROSA2.4e-8975.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus notabilis GN=L484... [more]
A0A0M3SH19_MORAL2.6e-8873.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1[more]
B9GKD1_POPTR1.7e-8772.052-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Populus trichocarpa GN=... [more]
A0A061G6M7_THECC3.8e-8775.212-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_... [more]
BLAST of CmaCh04G007250 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G63970.13.4e-8781.73 isoprenoid F[more]
BLAST of CmaCh04G007250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102205|ref|XP_008452007.1|1.8e-10384.75PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|449457594|ref|XP_004146533.1|1.0e-10183.26PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|703160811|ref|XP_010112628.1|3.4e-8975.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Morus notabilis][more]
gi|720017076|ref|XP_010261353.1|4.4e-8976.13PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|927030530|gb|ALD62475.1|3.7e-8873.442-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase [Morus alba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003526MECDP_synthase
IPR020555MECDP_synthase_CS
Vocabulary: Molecular Function
TermDefinition
GO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0016114terpenoid biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0010155 regulation of proton transport
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0009744 response to sucrose
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G007250.1CmaCh04G007250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseGENE3DG3DSA:3.30.1330.50coord: 78..235
score: 9.3
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseHAMAPMF_00107IspFcoord: 80..235
score: 33
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthasePFAMPF02542YgbBcoord: 80..233
score: 1.2
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseTIGRFAMsTIGR00151TIGR00151coord: 81..235
score: 1.6
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseunknownSSF69765IpsF-likecoord: 79..235
score: 5.49
IPR0205552-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved sitePROSITEPS01350ISPFcoord: 114..129
scor
NoneNo IPR availablePANTHERPTHR32125FAMILY NOT NAMEDcoord: 78..236
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G007250Cucsa.106950Cucumber (Gy14) v1cgycmaB0246
CmaCh04G007250Cla014654Watermelon (97103) v1cmawmB677
CmaCh04G007250Csa4G049620Cucumber (Chinese Long) v2cmacuB713
CmaCh04G007250MELO3C016339Melon (DHL92) v3.5.1cmameB694
CmaCh04G007250ClCG07G007880Watermelon (Charleston Gray)cmawcgB668
CmaCh04G007250CSPI04G05930Wild cucumber (PI 183967)cmacpiB721
CmaCh04G007250CmoCh04G007690Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G007250Lsi07G009020Bottle gourd (USVL1VR-Ls)cmalsiB700
CmaCh04G007250Cp4.1LG01g00240Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G007250MELO3C016339.2Melon (DHL92) v3.6.1cmamedB782
CmaCh04G007250CsaV3_4G006100Cucumber (Chinese Long) v3cmacucB0847
CmaCh04G007250Cla97C07G135070Watermelon (97103) v2cmawmbB774
CmaCh04G007250Bhi01G001788Wax gourdcmawgoB0846
CmaCh04G007250CsGy4G005800Cucumber (Gy14) v2cgybcmaB547
CmaCh04G007250Carg14122Silver-seed gourdcarcmaB1288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G007250Cucumber (Chinese Long) v3cmacucB0872
CmaCh04G007250Watermelon (97103) v2cmawmbB706
CmaCh04G007250Watermelon (97103) v2cmawmbB761
CmaCh04G007250Cucurbita maxima (Rimu)cmacmaB328
CmaCh04G007250Cucurbita maxima (Rimu)cmacmaB350
CmaCh04G007250Cucumber (Gy14) v1cgycmaB0838
CmaCh04G007250Cucurbita moschata (Rifu)cmacmoB697
CmaCh04G007250Cucurbita moschata (Rifu)cmacmoB700
CmaCh04G007250Wild cucumber (PI 183967)cmacpiB741
CmaCh04G007250Cucumber (Chinese Long) v2cmacuB734
CmaCh04G007250Melon (DHL92) v3.5.1cmameB638
CmaCh04G007250Watermelon (Charleston Gray)cmawcgB635
CmaCh04G007250Watermelon (97103) v1cmawmB712
CmaCh04G007250Cucurbita pepo (Zucchini)cmacpeB714
CmaCh04G007250Bottle gourd (USVL1VR-Ls)cmalsiB624
CmaCh04G007250Cucumber (Gy14) v2cgybcmaB661
CmaCh04G007250Melon (DHL92) v3.6.1cmamedB724
CmaCh04G007250Silver-seed gourdcarcmaB0826