CSPI04G05930 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGAAAAGAAGTGAAGTTAATAAGGGAATGTAATAAACGAGGCAATTACATATTTTTGTGACACTCTCCACGCGCCTTGCTGGCGCCAACAACAATACAATTCAACCACACAAAACACACTCTCCTTTCCATGGCCCTCTCCGCCCCACTCTTCGCCTCTCCGGCCGCTGCCACTACTTCCCACCAATCCCTTTCTCTTTCTCTCTATCCTCCTTCCTTTCCCACAACAAAATTTACACCACTTTCCTCCTTCTCCTCCTCCTCTTCTCTACCTTCTTTCCGTGTCAATTCCGCCGCTTCTCACTCTGTCTCCTCCACTACCGCCATCAAATCCGATTCTCCCTCCAAAACCTTGCCGTTTCGGGTTGGACACGGCTTTGATCTTCATCGCTTAGAGCCTGGGTACCCTTTGATTATTGGGGGGATTAGTATTCCTCATGATAGAGGCTGCGAAGCTCATTCCGATGGTAATTTTATTTGGTTTCTCTTTCTTTTTTGTGTTTTTGTTCCTTGCTATTTAATTGTGGGTGTTTAAATTCTTTCTCAGTTTTTTTCTTGGCTAATTATCCCTTCAATTTAACATTTGCATAGTTCTGTTTTAGTGTGTAATTGGCCGCTGTTGATGACGATACTTTTTTACTTAACTGAGAATTCTATGGACTAATTTGATAGAAGTTTGACATCTTTCAACTTCTTTTTACGTAATAGTTTTAGTTTTTAACCTATGAAAAATGGCAGCATCTTGTGTTATGTCAAATTCTATTATAGATTTGAAAATCCATGCGAAGCTATGTTCTATTGTTGGTGATAAGACTTGGATCTTACGGTTATTATAGTTTACTATTATTCAATTGATTTTGTACATTTGAAGTTTGGAGTGTTGGAGATCAGCTTATTTAAGCTCAGTTACCTATAATTGGTCTGTTGAATGGAGCTCCCATCTCGTCATGTTTTTTTTAGAAGTGTATACTATAAAATAAGTAATAACCCAAAGTTTGGTTTTTTTGTCTCTGCAGTTTAAATTTTCCTGCAACGTACTCTTGTTAAATTTTGAAGTGCTTATTTCTTTTGTTGATTTAGGAGATGTTCTACTGCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTGCATCATCTGTTTTCATAAAAGAAGCTGTAAGTAGTTACGGCGTAGTGAACTCTTACACATTTACCAAAATTTGTTATCTTTATATATGAAACTTGTCCTCCTTGACTTGTTTAATATGAATCACTTGGTGCATTGTACAGATGATCTAGGATTCTGTTGTTACTTTCGTATGGGATGTCATGATATCTTTTTGCTTGCTTTGCTGTTCGCTTTAGAGTTCCTCAATAGCATTGTGTGGATAAACCAATCACATAACCCTTTCTCAGGTTTTCGCAATTTTATTGGTCTCTTTGATGTGTATATGTTATGTCACATGTTGAGTTTTTACTGAGGATCGAAGTAGTGGTTGTGTCAAATTTGATGCATCTCAATAAATTGAGTATATTCAGTATTTTCTTCCTTGGAACTTTATGTTTATCTAACAAGTGAATGTTCGTTGTACCATTGAAACTGTTAGGATACTTCCTAACAAGAATTAGTATATTTCATATATTGAGAATTAACTCAGAACTACAATTAGATCCAAGTTTATGGCACTTGGGACCCCCTCTCTTGAGAATACTACTCAAGACCTATCTACTCAACAACTCCCCCTTCTTCATTCACCAACTTCTTATTTATAACCACTACTCTTAGTAACCGCTTAAATATCTAATTACCATATACCCCTAACCATATACTATTCTAGGTATCTAACAGAAACAAGTGTTGAAGTCTACTAAGTGAACCTTAGATATAGTTTCACTTCCTCATAATCAACTTATTCAACTTCAACTATATTTCCTGAACTGGAATGAGACTGATGCGCTTACTTCTTTGATCAAACCCTTTCATACTATTAGACCATTTTCTGGTTCCTTTGTGTAGCTTTGTCTCTAATTACCTAGAAAGAATAAGCTTCTGCAATAAGTCATGTATCTGCATGAAATGATGTCGGTTTGGGTGGAGAATTTAAGAATGTATCTCGGTCATGAAAGAAGAATCACTTTAGAACAATCTTTTAACTGAGTTATATTAAATATCTTTCACTTTAATGAATAAACAAAAACTTTTATTGAGACAAAAGAAGCGATATACAAACAGGGGAGCATGAAGCTCTTGGAAACCAAAAGGAACTGCAGAAAGGTTTTCCAATTCACTTGTATCAAAAGAGAAGAAAAGCTGCTAATCTTATACCTCGGGTTTCCCTTTTACGTCTCCCTTTGAAAATGCATAGGTTTCTTTATACAACCATTCTCACTAAATGTCATACACCAAAGTCCAAAGGAATCCAAAGAAGCTTTGTCTTCCTGTTGAAAATTCACCCAACAAGCGTTTGTGTAAAAGAATCTTGGATATCATCTTGGGGACTCTATATGCAATTATAACTATTGAAAGGGAAAAAATATCCTAAAAATGAATGGGGCTCCTGAATCCCCGGGTCTAGGGAACCTCAGGAAGCATGATGTTGTTATCTTATGAATTTCAAAATTTTCCAATGAGATTAAGTCTTGTTGAAGATTATTGCCAGCAATCATGAATAAGGCTTCACCTGCCATTTCAGGTGCCTCTTGGAGTGCGCTACTTCTCTTTTTTTCTTCTTCTGTATTTTATGAAACACTTTAACGCTTCTTATAAGAATCTCATGTAATATTTAGATTGTGAGGAATTACAGAACTTTAAGAGGGGTTGAGAGTCATTAGAACTTTAAGGGGGTTGAGGGTCATTAGAACCGTGGGCTAGCCAGTTCACTTTGGCAAAATTTTAAAAGGATGCAAGGATATAATTAGTCAACTTGTCTGAGAAATTTGACTGACACTGGGTTTTTTCATTTGTTTTTTTATTTATTTTTTGCTAAACCAAGCATTAATTGAAAGAGAAAAAAATAATTAAAGAATAGAGTTTATCCAAATTAAACTAAAATGAGCTCCAACCTAACAAAATATGCCAAATCAAATAATTTAAGTTGCAAAATTCTTGCACACTGAAAGCCCAAAGATATGTGTGGTATCAAACCACGAACCAAACCTCTTCTCAAGTAGTCTCTGTCAAGTAAATGTTATAACAAAAATATACATAAAATTAGAGATGGATGCTTTAACCAGCGTGTCCCTGCTTCCTATATTATTCTGTTACTCTCAAATGCTAGGATAAGTTACTGGATTTACTGCTGCTCTTTGCAAATGCTTAGAGAATGCATAGAGTCAGTATTTACATGGCCCGGGACTCGGGTGTAACTTGTACAAATCATTAATTCATGTATTAAATACAAGTTACATCAACTTAAGTTTTCCATCTTTAGGTTTCATAAATTCAGGCTTATTAATCGCGAGGTAAACCCAAGTACACAACTACAATAGTTTGGCCTAGTGCTCCTTGGTCAATTAGAGACAATATAATTAATAAAGGATTCTGCGGAGATGAGTCCAAGTCATAATGACCATCTATTTAGGGATCTAGTGTCCTACAATTAATCTTGGCAACTAAATGTAGTAGTGTCAAGCAACTATCCTCAAATAATAATCCTCAAATAATAATTGGGGTACGTGCAAGGTGGTGCAAACACTCATAGGTAAAAGAAATTATGAGATGAAGACCGTCGAAGAGAAATGTTAATCAATAATGAGAAACTATCGACTCACCTACACCATGCTGTGTAGTTATGAAATGTTTGTTGAACTATCACTAGATTTTAAAATGTAAGTTGATGGGTTATAGTGAAGTTGTCATCTTTTCTTTAATTTCAATCGGAGTTTGAACACATGGGACAATCATGTAAAATGAAAAGAGAATAGCATTATAGGGTAGGGGGTATGAACTTTGCAACACTGTATTTTAATATTAAAAAAGTGACTCTGATAGGTTGGGTACTTTTATCTTTTCAACATGTGATTAGTCAATAAACCTAATCGTAAAGGCTAAATCTCAATCCATATGTGAGGAGACAATAGGTCTCTCCCTTGAAAATCTGAGGCAAGTGAATCCATTTACCAAACCAAAGTCGAAATAAATCATTCGAATTCAGTTCATTTTAGGTAAAGTTCAATTATGTGATTACTGAGATGAAATCTTTGGTTGATTCTAGGTGAGACTGATGCACGAGGCAGGTTATGACATCGGCAATTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAAGCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGATAGTCTTGGTGAAAATAGAAGCATTGCTGCTCATACTGTGGTCCTGTTGATGAGGAGATAGAAGCACTGCCCTCCCATTAGTACTGCTGTGCAACTGTCATAACAACAGTGTTCTCCATTTTAATTGGAATATGCTTTATTGTTAAAATACTTTGAATTTTTCCCCATCACCTCCACAGTTCCCAGCAAAGTGCAAACGATTGTAAGTTGGGTTGTTACATTAAACGTTTTAATCATTCAACAACATTGAAAAGCAAAATAGTTTGGTGGGAGAATATTAGAAATTGCGTACAATTATTGTTTCTGTTCCTGTTTTCCCTTGGCCTCATTTTCAATTTTACTTGATCATTAAATTCTTGTGTAATTGTTGAGTTGCTATCTTTAAGAAGA ATGGCCCTCTCCGCCCCACTCTTCGCCTCTCCGGCCGCTGCCACTACTTCCCACCAATCCCTTTCTCTTTCTCTCTATCCTCCTTCCTTTCCCACAACAAAATTTACACCACTTTCCTCCTTCTCCTCCTCCTCTTCTCTACCTTCTTTCCGTGTCAATTCCGCCGCTTCTCACTCTGTCTCCTCCACTACCGCCATCAAATCCGATTCTCCCTCCAAAACCTTGCCGTTTCGGGTTGGACACGGCTTTGATCTTCATCGCTTAGAGCCTGGGTACCCTTTGATTATTGGGGGGATTAGTATTCCTCATGATAGAGGCTGCGAAGCTCATTCCGATGGAGATGTTCTACTGCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTGCATCATCTGTTTTCATAAAAGAAGCTGTGAGACTGATGCACGAGGCAGGTTATGACATCGGCAATTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAAGCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGATAGTCTTGGTGAAAATAGAAGCATTGCTGCTCATACTGTGGTCCTGTTGATGAGGAGATAG ATGGCCCTCTCCGCCCCACTCTTCGCCTCTCCGGCCGCTGCCACTACTTCCCACCAATCCCTTTCTCTTTCTCTCTATCCTCCTTCCTTTCCCACAACAAAATTTACACCACTTTCCTCCTTCTCCTCCTCCTCTTCTCTACCTTCTTTCCGTGTCAATTCCGCCGCTTCTCACTCTGTCTCCTCCACTACCGCCATCAAATCCGATTCTCCCTCCAAAACCTTGCCGTTTCGGGTTGGACACGGCTTTGATCTTCATCGCTTAGAGCCTGGGTACCCTTTGATTATTGGGGGGATTAGTATTCCTCATGATAGAGGCTGCGAAGCTCATTCCGATGGAGATGTTCTACTGCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTGCATCATCTGTTTTCATAAAAGAAGCTGTGAGACTGATGCACGAGGCAGGTTATGACATCGGCAATTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAAGCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGATAGTCTTGGTGAAAATAGAAGCATTGCTGCTCATACTGTGGTCCTGTTGATGAGGAGATAG
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 2.7e-86 Identity = 175/232 (75.43%), Postives = 191/232 (82.33%), Query Frame = 1
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 3.7e-80 Identity = 166/238 (69.75%), Postives = 189/238 (79.41%), Query Frame = 1
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPF_ORYSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPF PE=2 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 9.1e-79 Identity = 155/234 (66.24%), Postives = 180/234 (76.92%), Query Frame = 1
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme IspD/IspF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 5.6e-44 Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPF_CUPMC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=ispF PE=3 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 8.1e-43 Identity = 83/156 (53.21%), Postives = 108/156 (69.23%), Query Frame = 1
BLAST of CSPI04G05930 vs. TrEMBL
Match: A0A0A0KWV1_CUCSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_4G049620 PE=3 SV=1) HSP 1 Score: 453.0 bits (1164), Expect = 2.2e-124 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
BLAST of CSPI04G05930 vs. TrEMBL
Match: H9MZJ4_9GENT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mitragyna speciosa GN=MDS PE=2 SV=1) HSP 1 Score: 332.4 bits (851), Expect = 4.4e-88 Identity = 171/223 (76.68%), Postives = 190/223 (85.20%), Query Frame = 1
BLAST of CSPI04G05930 vs. TrEMBL
Match: A0A0D2QHJ5_GOSRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=B456_003G085800 PE=3 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 5.4e-86 Identity = 177/228 (77.63%), Postives = 188/228 (82.46%), Query Frame = 1
BLAST of CSPI04G05930 vs. TrEMBL
Match: A0A0M3SH19_MORAL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1) HSP 1 Score: 325.1 bits (832), Expect = 7.0e-86 Identity = 178/247 (72.06%), Postives = 203/247 (82.19%), Query Frame = 1
BLAST of CSPI04G05930 vs. TrEMBL
Match: A0A061G6M7_THECC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_016340 PE=3 SV=1) HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85 Identity = 174/232 (75.00%), Postives = 188/232 (81.03%), Query Frame = 1
BLAST of CSPI04G05930 vs. TAIR10
Match: AT1G63970.1 (AT1G63970.1 isoprenoid F) HSP 1 Score: 319.7 bits (818), Expect = 1.5e-87 Identity = 175/232 (75.43%), Postives = 191/232 (82.33%), Query Frame = 1
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|449457594|ref|XP_004146533.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sativus]) HSP 1 Score: 453.0 bits (1164), Expect = 3.2e-124 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|659102205|ref|XP_008452007.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis melo]) HSP 1 Score: 419.9 bits (1078), Expect = 3.0e-114 Identity = 218/233 (93.56%), Postives = 220/233 (94.42%), Query Frame = 1
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|377648356|gb|AFB70982.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Mitragyna speciosa]) HSP 1 Score: 332.4 bits (851), Expect = 6.3e-88 Identity = 171/223 (76.68%), Postives = 190/223 (85.20%), Query Frame = 1
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|743852788|ref|XP_011029355.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Populus euphratica]) HSP 1 Score: 328.2 bits (840), Expect = 1.2e-86 Identity = 162/190 (85.26%), Postives = 173/190 (91.05%), Query Frame = 1
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|297742240|emb|CBI34389.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 326.6 bits (836), Expect = 3.5e-86 Identity = 160/182 (87.91%), Postives = 170/182 (93.41%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |