CSPI04G05930 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G05930
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
LocationChr4 : 4018461 .. 4023272 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAAAGAAGTGAAGTTAATAAGGGAATGTAATAAACGAGGCAATTACATATTTTTGTGACACTCTCCACGCGCCTTGCTGGCGCCAACAACAATACAATTCAACCACACAAAACACACTCTCCTTTCCATGGCCCTCTCCGCCCCACTCTTCGCCTCTCCGGCCGCTGCCACTACTTCCCACCAATCCCTTTCTCTTTCTCTCTATCCTCCTTCCTTTCCCACAACAAAATTTACACCACTTTCCTCCTTCTCCTCCTCCTCTTCTCTACCTTCTTTCCGTGTCAATTCCGCCGCTTCTCACTCTGTCTCCTCCACTACCGCCATCAAATCCGATTCTCCCTCCAAAACCTTGCCGTTTCGGGTTGGACACGGCTTTGATCTTCATCGCTTAGAGCCTGGGTACCCTTTGATTATTGGGGGGATTAGTATTCCTCATGATAGAGGCTGCGAAGCTCATTCCGATGGTAATTTTATTTGGTTTCTCTTTCTTTTTTGTGTTTTTGTTCCTTGCTATTTAATTGTGGGTGTTTAAATTCTTTCTCAGTTTTTTTCTTGGCTAATTATCCCTTCAATTTAACATTTGCATAGTTCTGTTTTAGTGTGTAATTGGCCGCTGTTGATGACGATACTTTTTTACTTAACTGAGAATTCTATGGACTAATTTGATAGAAGTTTGACATCTTTCAACTTCTTTTTACGTAATAGTTTTAGTTTTTAACCTATGAAAAATGGCAGCATCTTGTGTTATGTCAAATTCTATTATAGATTTGAAAATCCATGCGAAGCTATGTTCTATTGTTGGTGATAAGACTTGGATCTTACGGTTATTATAGTTTACTATTATTCAATTGATTTTGTACATTTGAAGTTTGGAGTGTTGGAGATCAGCTTATTTAAGCTCAGTTACCTATAATTGGTCTGTTGAATGGAGCTCCCATCTCGTCATGTTTTTTTTAGAAGTGTATACTATAAAATAAGTAATAACCCAAAGTTTGGTTTTTTTGTCTCTGCAGTTTAAATTTTCCTGCAACGTACTCTTGTTAAATTTTGAAGTGCTTATTTCTTTTGTTGATTTAGGAGATGTTCTACTGCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTGCATCATCTGTTTTCATAAAAGAAGCTGTAAGTAGTTACGGCGTAGTGAACTCTTACACATTTACCAAAATTTGTTATCTTTATATATGAAACTTGTCCTCCTTGACTTGTTTAATATGAATCACTTGGTGCATTGTACAGATGATCTAGGATTCTGTTGTTACTTTCGTATGGGATGTCATGATATCTTTTTGCTTGCTTTGCTGTTCGCTTTAGAGTTCCTCAATAGCATTGTGTGGATAAACCAATCACATAACCCTTTCTCAGGTTTTCGCAATTTTATTGGTCTCTTTGATGTGTATATGTTATGTCACATGTTGAGTTTTTACTGAGGATCGAAGTAGTGGTTGTGTCAAATTTGATGCATCTCAATAAATTGAGTATATTCAGTATTTTCTTCCTTGGAACTTTATGTTTATCTAACAAGTGAATGTTCGTTGTACCATTGAAACTGTTAGGATACTTCCTAACAAGAATTAGTATATTTCATATATTGAGAATTAACTCAGAACTACAATTAGATCCAAGTTTATGGCACTTGGGACCCCCTCTCTTGAGAATACTACTCAAGACCTATCTACTCAACAACTCCCCCTTCTTCATTCACCAACTTCTTATTTATAACCACTACTCTTAGTAACCGCTTAAATATCTAATTACCATATACCCCTAACCATATACTATTCTAGGTATCTAACAGAAACAAGTGTTGAAGTCTACTAAGTGAACCTTAGATATAGTTTCACTTCCTCATAATCAACTTATTCAACTTCAACTATATTTCCTGAACTGGAATGAGACTGATGCGCTTACTTCTTTGATCAAACCCTTTCATACTATTAGACCATTTTCTGGTTCCTTTGTGTAGCTTTGTCTCTAATTACCTAGAAAGAATAAGCTTCTGCAATAAGTCATGTATCTGCATGAAATGATGTCGGTTTGGGTGGAGAATTTAAGAATGTATCTCGGTCATGAAAGAAGAATCACTTTAGAACAATCTTTTAACTGAGTTATATTAAATATCTTTCACTTTAATGAATAAACAAAAACTTTTATTGAGACAAAAGAAGCGATATACAAACAGGGGAGCATGAAGCTCTTGGAAACCAAAAGGAACTGCAGAAAGGTTTTCCAATTCACTTGTATCAAAAGAGAAGAAAAGCTGCTAATCTTATACCTCGGGTTTCCCTTTTACGTCTCCCTTTGAAAATGCATAGGTTTCTTTATACAACCATTCTCACTAAATGTCATACACCAAAGTCCAAAGGAATCCAAAGAAGCTTTGTCTTCCTGTTGAAAATTCACCCAACAAGCGTTTGTGTAAAAGAATCTTGGATATCATCTTGGGGACTCTATATGCAATTATAACTATTGAAAGGGAAAAAATATCCTAAAAATGAATGGGGCTCCTGAATCCCCGGGTCTAGGGAACCTCAGGAAGCATGATGTTGTTATCTTATGAATTTCAAAATTTTCCAATGAGATTAAGTCTTGTTGAAGATTATTGCCAGCAATCATGAATAAGGCTTCACCTGCCATTTCAGGTGCCTCTTGGAGTGCGCTACTTCTCTTTTTTTCTTCTTCTGTATTTTATGAAACACTTTAACGCTTCTTATAAGAATCTCATGTAATATTTAGATTGTGAGGAATTACAGAACTTTAAGAGGGGTTGAGAGTCATTAGAACTTTAAGGGGGTTGAGGGTCATTAGAACCGTGGGCTAGCCAGTTCACTTTGGCAAAATTTTAAAAGGATGCAAGGATATAATTAGTCAACTTGTCTGAGAAATTTGACTGACACTGGGTTTTTTCATTTGTTTTTTTATTTATTTTTTGCTAAACCAAGCATTAATTGAAAGAGAAAAAAATAATTAAAGAATAGAGTTTATCCAAATTAAACTAAAATGAGCTCCAACCTAACAAAATATGCCAAATCAAATAATTTAAGTTGCAAAATTCTTGCACACTGAAAGCCCAAAGATATGTGTGGTATCAAACCACGAACCAAACCTCTTCTCAAGTAGTCTCTGTCAAGTAAATGTTATAACAAAAATATACATAAAATTAGAGATGGATGCTTTAACCAGCGTGTCCCTGCTTCCTATATTATTCTGTTACTCTCAAATGCTAGGATAAGTTACTGGATTTACTGCTGCTCTTTGCAAATGCTTAGAGAATGCATAGAGTCAGTATTTACATGGCCCGGGACTCGGGTGTAACTTGTACAAATCATTAATTCATGTATTAAATACAAGTTACATCAACTTAAGTTTTCCATCTTTAGGTTTCATAAATTCAGGCTTATTAATCGCGAGGTAAACCCAAGTACACAACTACAATAGTTTGGCCTAGTGCTCCTTGGTCAATTAGAGACAATATAATTAATAAAGGATTCTGCGGAGATGAGTCCAAGTCATAATGACCATCTATTTAGGGATCTAGTGTCCTACAATTAATCTTGGCAACTAAATGTAGTAGTGTCAAGCAACTATCCTCAAATAATAATCCTCAAATAATAATTGGGGTACGTGCAAGGTGGTGCAAACACTCATAGGTAAAAGAAATTATGAGATGAAGACCGTCGAAGAGAAATGTTAATCAATAATGAGAAACTATCGACTCACCTACACCATGCTGTGTAGTTATGAAATGTTTGTTGAACTATCACTAGATTTTAAAATGTAAGTTGATGGGTTATAGTGAAGTTGTCATCTTTTCTTTAATTTCAATCGGAGTTTGAACACATGGGACAATCATGTAAAATGAAAAGAGAATAGCATTATAGGGTAGGGGGTATGAACTTTGCAACACTGTATTTTAATATTAAAAAAGTGACTCTGATAGGTTGGGTACTTTTATCTTTTCAACATGTGATTAGTCAATAAACCTAATCGTAAAGGCTAAATCTCAATCCATATGTGAGGAGACAATAGGTCTCTCCCTTGAAAATCTGAGGCAAGTGAATCCATTTACCAAACCAAAGTCGAAATAAATCATTCGAATTCAGTTCATTTTAGGTAAAGTTCAATTATGTGATTACTGAGATGAAATCTTTGGTTGATTCTAGGTGAGACTGATGCACGAGGCAGGTTATGACATCGGCAATTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAAGCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGATAGTCTTGGTGAAAATAGAAGCATTGCTGCTCATACTGTGGTCCTGTTGATGAGGAGATAGAAGCACTGCCCTCCCATTAGTACTGCTGTGCAACTGTCATAACAACAGTGTTCTCCATTTTAATTGGAATATGCTTTATTGTTAAAATACTTTGAATTTTTCCCCATCACCTCCACAGTTCCCAGCAAAGTGCAAACGATTGTAAGTTGGGTTGTTACATTAAACGTTTTAATCATTCAACAACATTGAAAAGCAAAATAGTTTGGTGGGAGAATATTAGAAATTGCGTACAATTATTGTTTCTGTTCCTGTTTTCCCTTGGCCTCATTTTCAATTTTACTTGATCATTAAATTCTTGTGTAATTGTTGAGTTGCTATCTTTAAGAAGA

mRNA sequence

ATGGCCCTCTCCGCCCCACTCTTCGCCTCTCCGGCCGCTGCCACTACTTCCCACCAATCCCTTTCTCTTTCTCTCTATCCTCCTTCCTTTCCCACAACAAAATTTACACCACTTTCCTCCTTCTCCTCCTCCTCTTCTCTACCTTCTTTCCGTGTCAATTCCGCCGCTTCTCACTCTGTCTCCTCCACTACCGCCATCAAATCCGATTCTCCCTCCAAAACCTTGCCGTTTCGGGTTGGACACGGCTTTGATCTTCATCGCTTAGAGCCTGGGTACCCTTTGATTATTGGGGGGATTAGTATTCCTCATGATAGAGGCTGCGAAGCTCATTCCGATGGAGATGTTCTACTGCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTGCATCATCTGTTTTCATAAAAGAAGCTGTGAGACTGATGCACGAGGCAGGTTATGACATCGGCAATTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAAGCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGATAGTCTTGGTGAAAATAGAAGCATTGCTGCTCATACTGTGGTCCTGTTGATGAGGAGATAG

Coding sequence (CDS)

ATGGCCCTCTCCGCCCCACTCTTCGCCTCTCCGGCCGCTGCCACTACTTCCCACCAATCCCTTTCTCTTTCTCTCTATCCTCCTTCCTTTCCCACAACAAAATTTACACCACTTTCCTCCTTCTCCTCCTCCTCTTCTCTACCTTCTTTCCGTGTCAATTCCGCCGCTTCTCACTCTGTCTCCTCCACTACCGCCATCAAATCCGATTCTCCCTCCAAAACCTTGCCGTTTCGGGTTGGACACGGCTTTGATCTTCATCGCTTAGAGCCTGGGTACCCTTTGATTATTGGGGGGATTAGTATTCCTCATGATAGAGGCTGCGAAGCTCATTCCGATGGAGATGTTCTACTGCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTGCATCATCTGTTTTCATAAAAGAAGCTGTGAGACTGATGCACGAGGCAGGTTATGACATCGGCAATTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAAGCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGATAGTCTTGGTGAAAATAGAAGCATTGCTGCTCATACTGTGGTCCTGTTGATGAGGAGATAG
Homology
[Close]
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.7e-86
Identity = 175/232 (75.43%), Postives = 191/232 (82.33%), Query Frame = 1 

Query: 14  ATTSHQSL--SLSLY-------PPSFPTTK---FTPLSSFSSSSSLPSFRVNSAASHSVS 73
           AT+S Q L  S SL+       P   P TK   + P  S S S   PS  V SAAS +V 
Sbjct: 2   ATSSTQLLLSSSSLFHSQITKKPFLLPATKIGVWRPKKSLSLSCR-PSASV-SAASSAVD 61

Query: 74  STTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVV 133
              ++ S+ P+KTLPFR+GHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVV
Sbjct: 62  VNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVV 121

Query: 134 DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPKL 193
           DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLM EAGY+IGNLDATLILQRPK+
Sbjct: 122 DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKI 181

Query: 194 SPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
           SPHKE IR+ LS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV+LLM++
Sbjct: 182 SPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231

[Close]
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.7e-80
Identity = 166/238 (69.75%), Postives = 189/238 (79.41%), Query Frame = 1 

Query: 1   MALSAPLFASPAAATT-SHQSLSLSLYPP---SFPTTKFTPLSSFSSSSSLPSFRVNSAA 60
           MA++   + S A  +  ++Q+    L  P   S  T  +  LS+  S +   S  V++AA
Sbjct: 1   MAMATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTL--SLVVSAAA 60

Query: 61  SHS-VSSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDV 120
           S + V +     + +PSK L FRVGHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDV
Sbjct: 61  SGAAVEAEPKFAAVTPSKILSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDV 120

Query: 121 LLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLI 180
           LLHCVVDAILGALGLPDIGQIFPD+DPKWKGA SSVFIKEAVRLM EAGY++GNLDATLI
Sbjct: 121 LLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLI 180

Query: 181 LQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
           LQRPK+SPHKEAIR  L +LLGADP VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 181 LQRPKVSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236

[Close]
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPF_ORYSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPF PE=2 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 9.1e-79
Identity = 155/234 (66.24%), Postives = 180/234 (76.92%), Query Frame = 1 

Query: 1   MALSAPLF-ASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHS 60
           MA ++ LF ASP A   + ++ S     P+ P+ +    S+ +            AA+  
Sbjct: 1   MATASSLFLASPVATAPTARARSTPSASPARPSLRLRRPSTLA------------AAAVQ 60

Query: 61  VSSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHC 120
                A+ +      LPFRVGHGFDLHRLEPG PLIIGGI IPHDRGC+AHSDGDVLLHC
Sbjct: 61  AEHQPAVAAAPKPPALPFRVGHGFDLHRLEPGLPLIIGGIDIPHDRGCDAHSDGDVLLHC 120

Query: 121 VVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRP 180
           VVDAILGALGLPDIGQIFPDSDP+WKGA SSVF++EAV+LMHEAGY++GNLDATLILQ+P
Sbjct: 121 VVDAILGALGLPDIGQIFPDSDPRWKGADSSVFMREAVKLMHEAGYELGNLDATLILQKP 180

Query: 181 KLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
           K+SP KE IR+ L +LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 181 KISPFKETIRSNLCDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 222

[Close]
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme IspD/IspF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.6e-44
Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1 

Query: 69  DSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGAL 128
           D  +  LP RVG GFD+H+LE G  L +GGI + HD+G   HSD DV LH +VDA+LGA+
Sbjct: 218 DFMADLLPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAI 277

Query: 129 GLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAI 188
           G  DIG  FP SDP+WKGAASS FI+ A +L+ EAGY +GN+D T+I + P++ PH++A+
Sbjct: 278 GKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICEAPRIGPHRDAM 337

Query: 189 RAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
             +++ELL   P  +++KA T EK+   G    IAA     ++R+
Sbjct: 338 GQRIAELLATSPDAISVKATTTEKLGFTGRGEGIAAQAAATVVRK 382

[Close]
BLAST of CSPI04G05930 vs. Swiss-Prot
Match: ISPF_CUPMC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=ispF PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.1e-43
Identity = 83/156 (53.21%), Postives = 108/156 (69.23%), Query Frame = 1 

Query: 78  RVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 137
           R+G G+D+H L PG  LI+GG+ IPHDRG   HSD D LLH V DA+ GA  L DIG+ F
Sbjct: 7   RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHF 66

Query: 138 PDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRAKLSELLG 197
           PD+DP + GA S V ++EAVR + EAGY+IGN+DAT+I Q+PKL+PH   + A L+E LG
Sbjct: 67  PDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLG 126

Query: 198 ADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
              +  N+KAKT+EK+   G+   I A   VL+ RR
Sbjct: 127 LPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162

[Close]
BLAST of CSPI04G05930 vs. TrEMBL
Match: A0A0A0KWV1_CUCSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_4G049620 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 2.2e-124
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 

Query: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60
           MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120
           SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV
Sbjct: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120

Query: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180
           VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK
Sbjct: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180

Query: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
           LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of CSPI04G05930 vs. TrEMBL
Match: H9MZJ4_9GENT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mitragyna speciosa GN=MDS PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 4.4e-88
Identity = 171/223 (76.68%), Postives = 190/223 (85.20%), Query Frame = 1 

Query: 11  PAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSVSSTTAIKSDS 70
           PAA +    S + +    S+ TT  +PL   S  SS PS  V SAAS +V + + + +  
Sbjct: 18  PAATSPPITSRTCATTTLSYYTTTSSPLKFTSKRSSKPSTLVVSAASTAVEADSHLSAAV 77

Query: 71  PSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGL 130
           PSK+LPFR+GHGFDLHRLEPGYPLIIGG++IPH+RGCEAHSDGDVLLHCVVDAILGALGL
Sbjct: 78  PSKSLPFRIGHGFDLHRLEPGYPLIIGGVNIPHERGCEAHSDGDVLLHCVVDAILGALGL 137

Query: 131 PDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRA 190
           PDIGQIFPDSDPKWKGAASSVF+KEAVRLMHEAGY+IGNLDATLILQRPKLSPHKE IRA
Sbjct: 138 PDIGQIFPDSDPKWKGAASSVFMKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEVIRA 197

Query: 191 KLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
            L +LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 198 NLCQLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 240

[Close]
BLAST of CSPI04G05930 vs. TrEMBL
Match: A0A0D2QHJ5_GOSRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=B456_003G085800 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 5.4e-86
Identity = 177/228 (77.63%), Postives = 188/228 (82.46%), Query Frame = 1 

Query: 11  PAAATTSHQSLSLSLYP-PSFPTTK-FTPLSSFSSSSSLPSFRVNSAASHSVSSTTA--- 70
           PA  T+       SL P P    T+  T L S SSSSS  SF + ++ S + +ST     
Sbjct: 12  PARPTSGSVLNKYSLLPNPRISITRRHTTLVSSSSSSS--SFTLRASVSSAATSTAVDGT 71

Query: 71  IKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAIL 130
           I S  PSK+LPFRVGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAIL
Sbjct: 72  ISSTKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAIL 131

Query: 131 GALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHK 190
           GALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGY+IGNLDATLILQRPKLSPHK
Sbjct: 132 GALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHK 191

Query: 191 EAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
             I+A LSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 192 GVIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 237

[Close]
BLAST of CSPI04G05930 vs. TrEMBL
Match: A0A0M3SH19_MORAL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 7.0e-86
Identity = 178/247 (72.06%), Postives = 203/247 (82.19%), Query Frame = 1 

Query: 2   ALSAPLFASPAAATTSHQSLSLSLYP-------PSFPTTKFT--PLSSFSSS------SS 61
           A ++ L+AS     ++ +S SLS +P       P+  T  F+  PLS  SSS      S+
Sbjct: 3   ASTSSLYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSA 62

Query: 62  LPSFRVNSAASHSVSSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRG 121
           +PS   N+ A+ ++ +  +  S +PSK+LPFRVGHGFDLHRLEPGYPLIIGGI+IPH+RG
Sbjct: 63  VPSASANATAA-ALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERG 122

Query: 122 CEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYD 181
           CEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFI+EAVRLMHEAGY+
Sbjct: 123 CEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYE 182

Query: 182 IGNLDATLILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHT 234
           IGNLDATLILQRPKLSPHKEAIRA LSELLGADP+VVNLKAKTHEKVDSLGENRSIAAHT
Sbjct: 183 IGNLDATLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHT 242

[Close]
BLAST of CSPI04G05930 vs. TrEMBL
Match: A0A061G6M7_THECC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_016340 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85
Identity = 174/232 (75.00%), Postives = 188/232 (81.03%), Query Frame = 1 

Query: 7   LFASPAAATTSHQSLSLSLYPPSFPTTKF--TPLSSFSSSSSLPSFRVNSAASHSVSSTT 66
           + A P   T S++S+ L    P   T +     L S SSSSS  +F + ++ S   +S  
Sbjct: 127 IIAKPTPTTISNKSILLP--NPRIITARHHNNILQSASSSSSSSAFTLTASISPGATSVA 186

Query: 67  A---IKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVV 126
                 S  PSK+LPFRVGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVV
Sbjct: 187 VDGPTTSTKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVV 246

Query: 127 DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPKL 186
           DAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHE GY+IGNLDATLILQRPKL
Sbjct: 247 DAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEVGYEIGNLDATLILQRPKL 306

Query: 187 SPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
           SPHKEAI+A LSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 307 SPHKEAIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 356

[Close]
BLAST of CSPI04G05930 vs. TAIR10
Match: AT1G63970.1 (AT1G63970.1 isoprenoid F)

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-87
Identity = 175/232 (75.43%), Postives = 191/232 (82.33%), Query Frame = 1 

Query: 14  ATTSHQSL--SLSLY-------PPSFPTTK---FTPLSSFSSSSSLPSFRVNSAASHSVS 73
           AT+S Q L  S SL+       P   P TK   + P  S S S   PS  V SAAS +V 
Sbjct: 2   ATSSTQLLLSSSSLFHSQITKKPFLLPATKIGVWRPKKSLSLSCR-PSASV-SAASSAVD 61

Query: 74  STTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVV 133
              ++ S+ P+KTLPFR+GHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVV
Sbjct: 62  VNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVV 121

Query: 134 DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPKL 193
           DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLM EAGY+IGNLDATLILQRPK+
Sbjct: 122 DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKI 181

Query: 194 SPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
           SPHKE IR+ LS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV+LLM++
Sbjct: 182 SPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231

[Close]
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|449457594|ref|XP_004146533.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 453.0 bits (1164), Expect = 3.2e-124
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 

Query: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60
           MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120
           SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV
Sbjct: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120

Query: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180
           VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK
Sbjct: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180

Query: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
           LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|659102205|ref|XP_008452007.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 419.9 bits (1078), Expect = 3.0e-114
Identity = 218/233 (93.56%), Postives = 220/233 (94.42%), Query Frame = 1 

Query: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60
           MA+SAP FASP AATTSHQS SLS YPPSFP   FTPL   SSSSSLPSFRVNSA SHSV
Sbjct: 1   MAVSAPFFASPPAATTSHQSPSLSFYPPSFPRRIFTPL---SSSSSLPSFRVNSAVSHSV 60

Query: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120
           SSTTAI+SDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV
Sbjct: 61  SSTTAIESDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120

Query: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180
           VDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGYDIGNLDATLILQRPK
Sbjct: 121 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180

Query: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
           LSPHKEAIRA LSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 LSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|377648356|gb|AFB70982.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Mitragyna speciosa])

HSP 1 Score: 332.4 bits (851), Expect = 6.3e-88
Identity = 171/223 (76.68%), Postives = 190/223 (85.20%), Query Frame = 1 

Query: 11  PAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSVSSTTAIKSDS 70
           PAA +    S + +    S+ TT  +PL   S  SS PS  V SAAS +V + + + +  
Sbjct: 18  PAATSPPITSRTCATTTLSYYTTTSSPLKFTSKRSSKPSTLVVSAASTAVEADSHLSAAV 77

Query: 71  PSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGL 130
           PSK+LPFR+GHGFDLHRLEPGYPLIIGG++IPH+RGCEAHSDGDVLLHCVVDAILGALGL
Sbjct: 78  PSKSLPFRIGHGFDLHRLEPGYPLIIGGVNIPHERGCEAHSDGDVLLHCVVDAILGALGL 137

Query: 131 PDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRA 190
           PDIGQIFPDSDPKWKGAASSVF+KEAVRLMHEAGY+IGNLDATLILQRPKLSPHKE IRA
Sbjct: 138 PDIGQIFPDSDPKWKGAASSVFMKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEVIRA 197

Query: 191 KLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 234
            L +LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 198 NLCQLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 240

[Close]
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|743852788|ref|XP_011029355.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Populus euphratica])

HSP 1 Score: 328.2 bits (840), Expect = 1.2e-86
Identity = 162/190 (85.26%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 50  FRVNSAASHSVSSTTAIKSDSP------SKTLPFRVGHGFDLHRLEPGYPLIIGGISIPH 109
           F+  +  S S +STTAI+ D P      SKTLPFRVGHGFDLHRLEPGYPLIIGGI +PH
Sbjct: 46  FQKRTTLSISAASTTAIQVDGPTTSSKTSKTLPFRVGHGFDLHRLEPGYPLIIGGIDVPH 105

Query: 110 DRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEA 169
           DRGCEAHSDGDVLLHCVVDA+LGALGLPDIGQIFPDSDPKWKGA SSVFI+EA+RLMHEA
Sbjct: 106 DRGCEAHSDGDVLLHCVVDAVLGALGLPDIGQIFPDSDPKWKGAPSSVFIQEAMRLMHEA 165

Query: 170 GYDIGNLDATLILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIA 229
           GY+IGNLDATLILQRPKLSPHKEAIRA LSELLGADPSVVNLKAKTHEKVDSLGENRSIA
Sbjct: 166 GYEIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIA 225

Query: 230 AHTVVLLMRR 234
           AHTVVLLM++
Sbjct: 226 AHTVVLLMKK 235

[Close]
BLAST of CSPI04G05930 vs. NCBI nr
Match: gi|297742240|emb|CBI34389.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 326.6 bits (836), Expect = 3.5e-86
Identity = 160/182 (87.91%), Postives = 170/182 (93.41%), Query Frame = 1 

Query: 52  VNSAASHSVSSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHS 111
           V +AA+ +V +     S +PSK+LPFRVGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHS
Sbjct: 2   VAAAATTAVEAEPRSNSTAPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHS 61

Query: 112 DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLD 171
           DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGY+IGNLD
Sbjct: 62  DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLD 121

Query: 172 ATLILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 231
           ATLILQRPKLSPHKEAIR+ LS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM
Sbjct: 122 ATLILQRPKLSPHKEAIRSNLSQLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 181

Query: 232 RR 234
           R+
Sbjct: 182 RK 183

The following BLAST results are available for this feature:
BLAST of CSPI04G05930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ISPF_ARATH2.7e-8675.432-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop... [more]
ISPF_CATRO3.7e-8069.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan... [more]
ISPF_ORYSJ9.1e-7966.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa... [more]
ISPDF_ERYLH5.6e-4448.48Bifunctional enzyme IspD/IspF OS=Erythrobacter litoralis (strain HTCC2594) GN=is... [more]
ISPF_CUPMC8.1e-4353.212-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidura... [more]
BLAST of CSPI04G05930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWV1_CUCSA2.2e-124100.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_... [more]
H9MZJ4_9GENT4.4e-8876.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mitragyna speciosa GN=M... [more]
A0A0D2QHJ5_GOSRA5.4e-8677.632-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=... [more]
A0A0M3SH19_MORAL7.0e-8672.062-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1[more]
A0A061G6M7_THECC1.2e-8575.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_... [more]
BLAST of CSPI04G05930 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G63970.11.5e-8775.43 isoprenoid F[more]
BLAST of CSPI04G05930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457594|ref|XP_004146533.1|3.2e-124100.00PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|659102205|ref|XP_008452007.1|3.0e-11493.56PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|377648356|gb|AFB70982.1|6.3e-8876.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Mitragyna speciosa][more]
gi|743852788|ref|XP_011029355.1|1.2e-8685.26PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-... [more]
gi|297742240|emb|CBI34389.3|3.5e-8687.91unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003526MECDP_synthase
IPR020555MECDP_synthase_CS
Vocabulary: Molecular Function
TermDefinition
GO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0016114terpenoid biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0009744 response to sucrose
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0010155 regulation of proton transport
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0030154 cell differentiation
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005575 cellular_component
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G05930.1CSPI04G05930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseGENE3DG3DSA:3.30.1330.50coord: 75..232
score: 2.7
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseHAMAPMF_00107IspFcoord: 77..232
score: 32
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthasePFAMPF02542YgbBcoord: 77..230
score: 5.3
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseTIGRFAMsTIGR00151TIGR00151coord: 78..232
score: 1.8
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseunknownSSF69765IpsF-likecoord: 76..232
score: 2.62
IPR0205552-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved sitePROSITEPS01350ISPFcoord: 111..126
scor
NoneNo IPR availablePANTHERPTHR32125FAMILY NOT NAMEDcoord: 71..233
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G05930Cla014654Watermelon (97103) v1cpiwmB313
CSPI04G05930Csa4G049620Cucumber (Chinese Long) v2cpicuB182
CSPI04G05930MELO3C016339Melon (DHL92) v3.5.1cpimeB310
CSPI04G05930ClCG07G007880Watermelon (Charleston Gray)cpiwcgB342
CSPI04G05930Lsi07G009020Bottle gourd (USVL1VR-Ls)cpilsiB306
CSPI04G05930MELO3C016339.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G05930CsaV3_4G006100Cucumber (Chinese Long) v3cpicucB213
CSPI04G05930Cla97C07G135070Watermelon (97103) v2cpiwmbB332
CSPI04G05930Bhi01G001788Wax gourdcpiwgoB378
CSPI04G05930Cucsa.106950Cucumber (Gy14) v1cgycpiB130
CSPI04G05930CmaCh04G007250Cucurbita maxima (Rimu)cmacpiB721
CSPI04G05930CmoCh04G007690Cucurbita moschata (Rifu)cmocpiB715
CSPI04G05930Cp4.1LG01g00240Cucurbita pepo (Zucchini)cpecpiB405
CSPI04G05930CsGy4G005800Cucumber (Gy14) v2cgybcpiB168
CSPI04G05930Carg14122Silver-seed gourdcarcpiB0981
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G05930Cucumber (Chinese Long) v3cpicucB210
CSPI04G05930Cucumber (Chinese Long) v3cpicucB236
CSPI04G05930Cucumber (Chinese Long) v3cpicucB237
CSPI04G05930Watermelon (97103) v2cpiwmbB276
CSPI04G05930Watermelon (97103) v2cpiwmbB321
CSPI04G05930Wild cucumber (PI 183967)cpicpiB108
CSPI04G05930Wild cucumber (PI 183967)cpicpiB157
CSPI04G05930Wild cucumber (PI 183967)cpicpiB158
CSPI04G05930Cucumber (Gy14) v1cgycpiB385
CSPI04G05930Cucumber (Gy14) v1cgycpiB456
CSPI04G05930Cucurbita maxima (Rimu)cmacpiB295
CSPI04G05930Cucurbita maxima (Rimu)cmacpiB342
CSPI04G05930Cucurbita moschata (Rifu)cmocpiB285
CSPI04G05930Cucurbita moschata (Rifu)cmocpiB332
CSPI04G05930Cucumber (Chinese Long) v2cpicuB179
CSPI04G05930Cucumber (Chinese Long) v2cpicuB195
CSPI04G05930Cucumber (Chinese Long) v2cpicuB196
CSPI04G05930Melon (DHL92) v3.5.1cpimeB260
CSPI04G05930Melon (DHL92) v3.5.1cpimeB261
CSPI04G05930Melon (DHL92) v3.5.1cpimeB291
CSPI04G05930Watermelon (Charleston Gray)cpiwcgB299
CSPI04G05930Watermelon (Charleston Gray)cpiwcgB302
CSPI04G05930Watermelon (Charleston Gray)cpiwcgB331
CSPI04G05930Watermelon (97103) v1cpiwmB329
CSPI04G05930Watermelon (97103) v1cpiwmB334
CSPI04G05930Watermelon (97103) v1cpiwmB337
CSPI04G05930Cucurbita pepo (Zucchini)cpecpiB175
CSPI04G05930Cucurbita pepo (Zucchini)cpecpiB223
CSPI04G05930Bottle gourd (USVL1VR-Ls)cpilsiB244
CSPI04G05930Bottle gourd (USVL1VR-Ls)cpilsiB298
CSPI04G05930Melon (DHL92) v3.6.1cpimedB256
CSPI04G05930Melon (DHL92) v3.6.1cpimedB257
CSPI04G05930Melon (DHL92) v3.6.1cpimedB285
CSPI04G05930Cucumber (Gy14) v2cgybcpiB125
CSPI04G05930Cucumber (Gy14) v2cgybcpiB224
CSPI04G05930Silver-seed gourdcarcpiB0623