Cla014654 (gene) Watermelon (97103) v1

Overview
NameCla014654
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase (AHRD V1 **** E6Y2X2_RAUVE); contains Interpro domain(s) IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core
LocationChr7 : 19106486 .. 19110889 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTCTCCGCCCCCTTCTTCGCCTCTCCCACCGCCGCCACAACCTCCCACCAATCCCCTTCTCTTTCTTTCTATCCTCCTTCCTTTCCCAGAAGAAATTCCACTGCTGTTTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGCCGACTACCGCCGTCAAATCCGATTCTCCTTCCAAAACCTTGCCGTTTCGGGTCGGACATGGCTTCGATCTTCACAGGTTGGAGCCTGGGTACCCTTTGATTATTGGGGGAATTAGTATTCCCCATGATAGAGGCTGCGAGGCTCATTCCGATGGTAATTTCTTTGGTTTCTCTTTTTTGTCTTTTTCTCTGTTGCTTTGCTGCTGATGAAATAGGGGAATTATTGCCTACGTAATTGTGGGTGTTTTAGTTCTTTGAATAATTAGCTCAGTTTTGTTGTTGGCTGATTATCCTGTCAATTTTAGATTGCATATTGCTGTTTTAGGGTGTAATTGGCTGCTGTTGATTGCCCTACTGACGAGATTAGTACTTTTTTGCTTACTGAAAATTTTATGGACTAATTATAGAGAACTATATATAAAAAGCCATGGAAGGTTTTGTCCTAGTGTTAGTGATAGAACTTGGATTTTACTGTTATTATTGTCTACTATTACTCTAGTGTTTTTGTACCTATTGAACATTGGAGTGTTGGAGATCAGCTTATTTAAGCCCAGTTATCTGCAATTGATCTATTGAATGGAGCTTCCATCTCATCAAGCTTTTTAGAAGTCTCAACTTTGTTTTCTGTCTCTGTGATAAAAGTTTCCTGCAACTCTGTTAGACCTCCGATTATACACACTTATAAGAGGAGGGGTACGAAAGGAAATATACAAGGGGAGAGGGGAGAGGTAGCACGTGGAGTTAGTTAGGAATGGAGGGGACCAAAAGAAATACTTGAAAAGGGAGGAAAGGATCATGAGGGAGGATATCAGAATTCTTAGTGAGGAAATTATCCTTGAGGGAGAGAACTCCAGCTCTCTTGAATGTGCTGGGCTACTTTTAATTCTCATTTGGTTTTCTTAGTTTTTCGTTTTCTGGATATCGTGCTGTTAGCTTGGAATCTTATTGTATTTCTTGCTTGGATTCTTTGTTCTGTTTCCTGCTGCTTGTTCGGTATTTTTCTGAGTGCAGAAGGTTTGGATACCTAACAAACTCTTGTTGAATGTTGAAGTGTTTCTTTCTTTTGTTGATTTAGGGGATGTTCTACTACACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGACCCCAAATGGAAGGGTGCTCCATCATCCGTATTCATGAAAGAAGCTGTAAGTAGTTATGGCGTAGCAAATTCGTACGCACTTACCAAGATTTGTTATCTTTCATATATGAATCATGTCCTCTTTGACTTATTTAAAATGAGCCACATGGTGCACTGTACGGATGATCTAGGATTCTGTTGTTGCTTTCATACGGGATGTCATGAACTCATGATATCTTGTAATGCTTGCTTGCTTGTTCTGTTCTCTTTAGAGAGGCCCTCAATAGCGTAGTGGATGAACCAAATCACATATACCTTTCTCAGGTTTTCTCAATTTTATTGGTTTCTTCGATACGTATATGTTATGTCACATAAGAGTTCTATTATCTTTATTCAATAAATTTTACGAGGGTCATGTCACATGTCAGAGTTTTTACTCAGGACCGAATTAGTGGTTATATCAAATTTTAAGCATCTCAATAAATTTAGTCAGTATGAATGTTCATTGTATCAATGAAAGAAATGTCAAAGTCTAGTAAGTGGACCTTAGATATAGTTTCTCTTTCTCATAATCAACTTCAATTATATTGCCTGAACTGGACTGACCGTACACTTGCTTATTTGTTCAAACCCTTTTGTACCATTATAACATTTTATGTTTCCTCTACATCTTCTAATTACTTAGAGAGAATAGGATCGTGCAACAAGTCATATACCTGCATGAAATGATGTCGTTTCGGGTGGGGATTTTAAGAATGTATGGAGTAAAGAATGAGAATCAATTTATAGCGATCTTTCGATTCAGTTATATTAAATATCTTTCACTTGTATTAAGAAACAAAGACTCTTAATGAGACAAAGGAAGCAATACACAAACAGACTAGCATAAGAAGCTCTCCAAAACCAAAAGGAACTGCAGAAAGGTCATCAAAAGAGAAGAAAAGCAGCTAATCTGATATCTTGGGTTTCCCCATTTACTTCTCCCCTTCGAAAATACATATGTTTCTTTGTACAACAATCCTCACAAACATCATACACCAAAGGAATCCAAAGAAGCTTTTGTCTTCCTGTTGAAACTTCCACCCAACAACCATTTGTGTAAAAGAATCTTGGATATCATCTTGAGGACTCCATATGCAATTAAAACTATTGAAAGAGAAAAACAATTATTTACATGAATGGGGCTCCTGAATCCCCGGGTCTGGGGATCTCTAGGAAGCATGATGTTGTTCTGTTATCTTATGAGTTTCAAAATTCTCCAATGAGAATAAGGCTTGTTGAAGATTGTTGCCACTAAACTTGAATACGGTTTCACCTGCCATTTCAGGTGCATCTTGGAGTGCGCTACTTTATTTTTTTCTATCTTATGAAACATTTTAATGCTTCTTATAAGAATCTCATGTAATATTTAGATTGAGAGGAATTAAAGAACTTTTAGAGGGGTTGAGATTCGTACTAGAACTGTGGGCTAGCCGCGGTTCAGAGGATGCATGGAATAATTTAAATCGTAGACCGGTGCTAAGGGACTTCAGTCTAACAAAATAAGCCAAACTAAATAATTTAAATCGCAAAATCCTTGTAAACTGAAAGCTCAAAGATGTGTGGAATCTAACAATGGACCAAACCATGGACTAAACCTCTTCTCAAGAAGTCTTTGACCTCCCAGCAAATGTCATAACAAAAAAATACATAAAATTAGACAAGTTCTGGATTCATATTAAAGCATATTCTGACCTCAGAGATGGATGCTTCAACCAGTGTGTCCTTGCTTCCTAGATTGTCCTTTAACTCTCAAATGCTAGGATAAGTGACTCGATCCACTGGGGTTTTTTGCAAATGCTCAGAGAAGGTTTGGAGCCAGTATTATATGGCCATGGTGTAACTTGTAGAAATCATTAATTTTAAATTAAATACAAGTTACAACTTACATCAACTTAAGTTTTCCAACTTTAGGTTTCATAAATTCAGGCTCATTAATCGTGAGGTAAACACAACTACCGTAGTTTGGCCTAGTGGTCATTGGTCAATAAGAAACAATATAAGTAATTAAGAATTAAGCGGGAATGGTTTCAAGTCATGATGATCATCTATTTTGGGAGCATGTCCTACAAATTACCTAGGCAACTAAATGTAGTAGGATGATGTTGGGGTTCTTCCTAACAAGAACAAGATCCAAAATATATTGAAATATAGAGAAACTATTACAAGCTAATCCAAGTATAGAGGAACTTGGAACTTCCCTCTTGAGTGTACTCACCCAAGCCCTAGATCACTCACAGAATAACCTACTCTTCACTCACTTACCCTACTTCTATTTACACAGTAACTAGCTTTATACAATAACTACTCTTATTCAGTAACTACCTATCTATCTAATTGTCCATGTACCACTCACTAACAACATACTAAATATCTGGTACCTAACAGATGGGTTATGGTAAAGTTCTCGCGTTTTCTTAAATATCAACTCGAGGTCGAACACATGGGACAATTATGTAAAATGAGAAGAGAATAACATTATAGGGTAGGGGGTATGAACTTTGCAGCACTGTCTTTAATATTTAAAAAGTGAAGCTGATAGGTAGGTTGGTGTACATTTATCTTTTCAACATGTGGTTAGTCAACAAACCAGCCTAACGGCTAAATCTGAATCCATATGTGACGAGACAATATGCCTCTCCCACGAATATCTGAGGCAAGTGAATCCATTTAGCTAACCGAAGTCGAATTAAATAAGGCAAGTGAATCCGTTTAGCTAACCGAAGTCGAATTAAATAGTTTGCATTCAGTGCATTTTAAATAAAAGTTCCATTATAATTAGTGAGATGAAATCTTTGCTGTTATTTTTGGTTGATTCCAGGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTAATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTTTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACACATGAGAAAGTTGACAGCCTCGGCGAAAACAGAAGTATTGCTGCTCATACTGTGGTCCTCTTGATGAGGAGATAG

mRNA sequence

ATGGCAGTCTCCGCCCCCTTCTTCGCCTCTCCCACCGCCGCCACAACCTCCCACCAATCCCCTTCTCTTTCTTTCTATCCTCCTTCCTTTCCCAGAAGAAATTCCACTGCTGTTTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGCCGACTACCGCCGTCAAATCCGATTCTCCTTCCAAAACCTTGCCGTTTCGGGTCGGACATGGCTTCGATCTTCACAGGTTGGAGCCTGGGTACCCTTTGATTATTGGGGGAATTAGTATTCCCCATGATAGAGGCTGCGAGGCTCATTCCGATGGGGATGTTCTACTACACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGACCCCAAATGGAAGGGTGCTCCATCATCCGTATTCATGAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTAATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTTTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACACATGAGAAAGTTGACAGCCTCGGCGAAAACAGAAGTATTGCTGCTCATACTGTGGTCCTCTTGATGAGGAGATAG

Coding sequence (CDS)

ATGGCAGTCTCCGCCCCCTTCTTCGCCTCTCCCACCGCCGCCACAACCTCCCACCAATCCCCTTCTCTTTCTTTCTATCCTCCTTCCTTTCCCAGAAGAAATTCCACTGCTGTTTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGCCGACTACCGCCGTCAAATCCGATTCTCCTTCCAAAACCTTGCCGTTTCGGGTCGGACATGGCTTCGATCTTCACAGGTTGGAGCCTGGGTACCCTTTGATTATTGGGGGAATTAGTATTCCCCATGATAGAGGCTGCGAGGCTCATTCCGATGGGGATGTTCTACTACACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGACCCCAAATGGAAGGGTGCTCCATCATCCGTATTCATGAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTAATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTTTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACACATGAGAAAGTTGACAGCCTCGGCGAAAACAGAAGTATTGCTGCTCATACTGTGGTCCTCTTGATGAGGAGATAG

Protein sequence

MAVSAPFFASPTAATTSHQSPSLSFYPPSFPRRNSTAVSSSSLPSFRLNSAASPSVAPTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Homology
[Close]
BLAST of Cla014654 vs. Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 3.1e-87
Identity = 161/197 (81.73%), Postives = 175/197 (88.83%), Query Frame = 1 

Query: 33  RNSTAVSSSSLPSFRLNSAASPSVAPTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLII 92
           R   ++S S  PS  + SAAS +V    +V S+ P+KTLPFR+GHGFDLHRLEPGYPLII
Sbjct: 36  RPKKSLSLSCRPSASV-SAASSAVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 95

Query: 93  GGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEA 152
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVF+KEA
Sbjct: 96  GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 155

Query: 153 VRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSL 212
           VRLM EAGY+IGNLDATLILQRPK+SPHKE IR+NLS+LLGADPSVVNLKAKTHEKVDSL
Sbjct: 156 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 215

Query: 213 GENRSIAAHTVVLLMRR 230
           GENRSIAAHTV+LLM++
Sbjct: 216 GENRSIAAHTVILLMKK 231

[Close]
BLAST of Cla014654 vs. Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.2e-84
Identity = 166/238 (69.75%), Postives = 184/238 (77.31%), Query Frame = 1 

Query: 1   MAVSAPFFAS---PTAATTSHQSPSL------SFYPPSFPRRNSTAVSSSSLPSFRLNSA 60
           MA++  F+ S   P+  T  ++   L      S   PS+ R ++    + SL      S 
Sbjct: 1   MAMATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASG 60

Query: 61  ASPSVAPTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDV 120
           A+    P  A  +  PSK L FRVGHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDV
Sbjct: 61  AAVEAEPKFAAVT--PSKILSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDV 120

Query: 121 LLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLI 180
           LLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVF+KEAVRLM EAGY++GNLDATLI
Sbjct: 121 LLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLI 180

Query: 181 LQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
           LQRPK+SPHKEAIR NL +LLGADP VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 181 LQRPKVSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236

[Close]
BLAST of Cla014654 vs. Swiss-Prot
Match: ISPF_ORYSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPF PE=2 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.7e-82
Identity = 160/231 (69.26%), Postives = 176/231 (76.19%), Query Frame = 1 

Query: 4   SAPFFASPTAATTSHQSPSLSFYPPSFPRRNSTAVSSSSLPSFRLN-----SAASPSVAP 63
           S+ F ASP A   +              R  ST  +S + PS RL      +AA+     
Sbjct: 5   SSLFLASPVATAPT-------------ARARSTPSASPARPSLRLRRPSTLAAAAVQAEH 64

Query: 64  TTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVD 123
             AV +      LPFRVGHGFDLHRLEPG PLIIGGI IPHDRGC+AHSDGDVLLHCVVD
Sbjct: 65  QPAVAAAPKPPALPFRVGHGFDLHRLEPGLPLIIGGIDIPHDRGCDAHSDGDVLLHCVVD 124

Query: 124 AILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLS 183
           AILGALGLPDIGQIFPDSDP+WKGA SSVFM+EAV+LMHEAGY++GNLDATLILQ+PK+S
Sbjct: 125 AILGALGLPDIGQIFPDSDPRWKGADSSVFMREAVKLMHEAGYELGNLDATLILQKPKIS 184

Query: 184 PHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
           P KE IR+NL +LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 185 PFKETIRSNLCDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 222

[Close]
BLAST of Cla014654 vs. Swiss-Prot
Match: ISPF_RALPJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispF PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-41
Identity = 82/158 (51.90%), Postives = 107/158 (67.72%), Query Frame = 1 

Query: 71  LPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIG 130
           +  R+G G+D+H L  G  LI+GG+ IPH RG   HSD D LLH + DA+ GA GL DIG
Sbjct: 4   MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIG 63

Query: 131 QIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSE 190
           + FPD+DP + GA S V ++EAVR +H+AGY +GN+DAT+I Q+PKL+PH   + ANL+E
Sbjct: 64  RHFPDTDPAFAGADSRVLLREAVRRVHKAGYAVGNVDATVIAQKPKLAPHVPGMVANLAE 123

Query: 191 LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 229
            LG  P   N+KAKT+EK+   G+   I A  VVL+ R
Sbjct: 124 DLGIAPERCNVKAKTNEKLGFEGKEEGIVAQAVVLIYR 161

[Close]
BLAST of Cla014654 vs. Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme IspD/IspF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-41
Identity = 78/165 (47.27%), Postives = 108/165 (65.45%), Query Frame = 1 

Query: 65  DSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGAL 124
           D  +  LP RVG GFD+H+LE G  L +GGI + HD+G   HSD DV LH +VDA+LGA+
Sbjct: 218 DFMADLLPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAI 277

Query: 125 GLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAI 184
           G  DIG  FP SDP+WKGA SS F++ A +L+ EAGY +GN+D T+I + P++ PH++A+
Sbjct: 278 GKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICEAPRIGPHRDAM 337

Query: 185 RANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
              ++ELL   P  +++KA T EK+   G    IAA     ++R+
Sbjct: 338 GQRIAELLATSPDAISVKATTTEKLGFTGRGEGIAAQAAATVVRK 382

[Close]
BLAST of Cla014654 vs. TrEMBL
Match: A0A0A0KWV1_CUCSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_4G049620 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 3.3e-112
Identity = 210/233 (90.13%), Postives = 216/233 (92.70%), Query Frame = 1 

Query: 1   MAVSAPFFASPTAATTSHQSPSLSFYPPSFPRRNSTAVSS----SSLPSFRLNSAASPSV 60
           MA+SAP FASP AATTSHQS SLS YPPSFP    T +SS    SSLPSFR+NSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  APTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120
           + TTA+KSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV
Sbjct: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120

Query: 121 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPK 180
           VDAILGALGLPDIGQIFPDSDPKWKGA SSVF+KEAVRLMHEAGYDIGNLDATLILQRPK
Sbjct: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180

Query: 181 LSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
           LSPHKEAIRA LSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of Cla014654 vs. TrEMBL
Match: W9SB94_9ROSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus notabilis GN=L484_006708 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 9.3e-91
Identity = 180/242 (74.38%), Postives = 199/242 (82.23%), Query Frame = 1 

Query: 2   AVSAPFFASPTAATTSHQSPSLSFYPPS--FPRRNSTAVSSSSLPSFRLNSAASP--SVA 61
           A ++  +AS     +S + PSLS +P S  F   NST + SSS  S RL+S  +P  S  
Sbjct: 3   ASTSSLYASSLLPKSSAKYPSLSSFPRSSLFTPPNSTNLFSSSPLSLRLSSTTTPPPSAV 62

Query: 62  PTTAVK----------SDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHS 121
           P+ +            S +P K+LPFRVGHGFDLHRLEPGYPLIIGGI+IPH+RGCEAHS
Sbjct: 63  PSASAAAALEAQPSPASATPLKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHS 122

Query: 122 DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLD 181
           DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVF+KEAVRLMHEAGY+IGNLD
Sbjct: 123 DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLD 182

Query: 182 ATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 230
           ATLILQRPKLSPHKEAIRANLSELLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVVLLM
Sbjct: 183 ATLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 242

[Close]
BLAST of Cla014654 vs. TrEMBL
Match: A0A0M3SH19_MORAL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.0e-89
Identity = 177/246 (71.95%), Postives = 200/246 (81.30%), Query Frame = 1 

Query: 2   AVSAPFFASPTAATTSHQSPSLSFYPPSF---PRRNSTAVSSSSLPSFRLNSAASP--SV 61
           A ++  +AS     ++ +SPSLS +P S    P  ++T + SSS  S R +S  +P  S 
Sbjct: 3   ASTSSLYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSA 62

Query: 62  APTTAVK-------------SDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGC 121
            P+ +               S +PSK+LPFRVGHGFDLHRLEPGYPLIIGGI+IPH+RGC
Sbjct: 63  VPSASANATAAALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGC 122

Query: 122 EAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDI 181
           EAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVF++EAVRLMHEAGY+I
Sbjct: 123 EAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYEI 182

Query: 182 GNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV 230
           GNLDATLILQRPKLSPHKEAIRANLSELLGADP+VVNLKAKTHEKVDSLGENRSIAAHTV
Sbjct: 183 GNLDATLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTV 242

[Close]
BLAST of Cla014654 vs. TrEMBL
Match: A0A0D2QHJ5_GOSRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=B456_003G085800 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-89
Identity = 176/225 (78.22%), Postives = 189/225 (84.00%), Query Frame = 1 

Query: 9   ASPTAATTSHQSPSLSFYPPSFPRRNSTAVSSSSLPSFRLNSAASPSVAPTTAV----KS 68
           A PT+ +  ++   L     S  RR++T VSSSS  S     A+  S A +TAV     S
Sbjct: 13  ARPTSGSVLNKYSLLPNPRISITRRHTTLVSSSSSSSSFTLRASVSSAATSTAVDGTISS 72

Query: 69  DSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGAL 128
             PSK+LPFRVGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGAL
Sbjct: 73  TKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGAL 132

Query: 129 GLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAI 188
           GLPDIGQIFPDSDPKWKGAPSSVF+KEAVRLMHEAGY+IGNLDATLILQRPKLSPHK  I
Sbjct: 133 GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKGVI 192

Query: 189 RANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
           +ANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 193 KANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 237

[Close]
BLAST of Cla014654 vs. TrEMBL
Match: A0A061G6M7_THECC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_016340 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.3e-89
Identity = 178/229 (77.73%), Postives = 190/229 (82.97%), Query Frame = 1 

Query: 9   ASPTAATTSHQSPSLSFYPPSFPRRN-----STAVSSSSLPSFRLNSAASP---SVAPTT 68
           A PT  T S++S  L   P     R+      +A SSSS  +F L ++ SP   SVA   
Sbjct: 129 AKPTPTTISNKSILLP-NPRIITARHHNNILQSASSSSSSSAFTLTASISPGATSVAVDG 188

Query: 69  AVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAI 128
              S  PSK+LPFRVGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAI
Sbjct: 189 PTTSTKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAI 248

Query: 129 LGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLSPH 188
           LGALGLPDIGQIFPDSDPKWKGAPSSVF+KEAVRLMHE GY+IGNLDATLILQRPKLSPH
Sbjct: 249 LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEVGYEIGNLDATLILQRPKLSPH 308

Query: 189 KEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
           KEAI+ANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 309 KEAIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 356

[Close]
BLAST of Cla014654 vs. NCBI nr
Match: gi|659102205|ref|XP_008452007.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 6.3e-117
Identity = 216/230 (93.91%), Postives = 222/230 (96.52%), Query Frame = 1 

Query: 1   MAVSAPFFASPTAATTSHQSPSLSFYPPSFPRRNSTAVSSSS-LPSFRLNSAASPSVAPT 60
           MAVSAPFFASP AATTSHQSPSLSFYPPSFPRR  T +SSSS LPSFR+NSA S SV+ T
Sbjct: 1   MAVSAPFFASPPAATTSHQSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSST 60

Query: 61  TAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDA 120
           TA++SDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDA
Sbjct: 61  TAIESDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDA 120

Query: 121 ILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLSP 180
           ILGALGLPDIGQIFPDSDPKWKGAPSSVF+KEAVRLMHEAGYDIGNLDATLILQRPKLSP
Sbjct: 121 ILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSP 180

Query: 181 HKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
           HKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 HKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]
BLAST of Cla014654 vs. NCBI nr
Match: gi|449457594|ref|XP_004146533.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 412.5 bits (1059), Expect = 4.7e-112
Identity = 210/233 (90.13%), Postives = 216/233 (92.70%), Query Frame = 1 

Query: 1   MAVSAPFFASPTAATTSHQSPSLSFYPPSFPRRNSTAVSS----SSLPSFRLNSAASPSV 60
           MA+SAP FASP AATTSHQS SLS YPPSFP    T +SS    SSLPSFR+NSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  APTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120
           + TTA+KSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV
Sbjct: 61  SSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCV 120

Query: 121 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPK 180
           VDAILGALGLPDIGQIFPDSDPKWKGA SSVF+KEAVRLMHEAGYDIGNLDATLILQRPK
Sbjct: 121 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATLILQRPK 180

Query: 181 LSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
           LSPHKEAIRA LSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 LSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of Cla014654 vs. NCBI nr
Match: gi|703160811|ref|XP_010112628.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Morus notabilis])

HSP 1 Score: 341.3 bits (874), Expect = 1.3e-90
Identity = 180/242 (74.38%), Postives = 199/242 (82.23%), Query Frame = 1 

Query: 2   AVSAPFFASPTAATTSHQSPSLSFYPPS--FPRRNSTAVSSSSLPSFRLNSAASP--SVA 61
           A ++  +AS     +S + PSLS +P S  F   NST + SSS  S RL+S  +P  S  
Sbjct: 3   ASTSSLYASSLLPKSSAKYPSLSSFPRSSLFTPPNSTNLFSSSPLSLRLSSTTTPPPSAV 62

Query: 62  PTTAVK----------SDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHS 121
           P+ +            S +P K+LPFRVGHGFDLHRLEPGYPLIIGGI+IPH+RGCEAHS
Sbjct: 63  PSASAAAALEAQPSPASATPLKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHS 122

Query: 122 DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLD 181
           DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVF+KEAVRLMHEAGY+IGNLD
Sbjct: 123 DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLD 182

Query: 182 ATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 230
           ATLILQRPKLSPHKEAIRANLSELLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVVLLM
Sbjct: 183 ATLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 242

[Close]
BLAST of Cla014654 vs. NCBI nr
Match: gi|225426150|ref|XP_002278406.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Vitis vinifera])

HSP 1 Score: 338.2 bits (866), Expect = 1.1e-89
Identity = 175/231 (75.76%), Postives = 192/231 (83.12%), Query Frame = 1 

Query: 1   MAVSAPFFASPTAATTSHQS--PSLSFYPPSFPRRNSTAVSSSSLPSFRLNSAASPSVAP 60
           MA++AP  AS     +S +   P  S Y PS    + T    S+L    + +AA+ +V  
Sbjct: 1   MAMAAPIHASSITKISSTKQIYPFTSHYRPSSLVLSHTLSLRSTLRRPMVAAAATTAVEA 60

Query: 61  TTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVD 120
                S +PSK+LPFRVGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVD
Sbjct: 61  EPRSNSTAPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVD 120

Query: 121 AILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLS 180
           AILGALGLPDIGQIFPDSDPKWKGAPSSVF+KEAVRLMHEAGY+IGNLDATLILQRPKLS
Sbjct: 121 AILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLS 180

Query: 181 PHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
           PHKEAIR+NLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 181 PHKEAIRSNLSQLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 231

[Close]
BLAST of Cla014654 vs. NCBI nr
Match: gi|927030530|gb|ALD62475.1| (2-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase [Morus alba])

HSP 1 Score: 337.8 bits (865), Expect = 1.5e-89
Identity = 177/246 (71.95%), Postives = 200/246 (81.30%), Query Frame = 1 

Query: 2   AVSAPFFASPTAATTSHQSPSLSFYPPSF---PRRNSTAVSSSSLPSFRLNSAASP--SV 61
           A ++  +AS     ++ +SPSLS +P S    P  ++T + SSS  S R +S  +P  S 
Sbjct: 3   ASTSSLYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSA 62

Query: 62  APTTAVK-------------SDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGC 121
            P+ +               S +PSK+LPFRVGHGFDLHRLEPGYPLIIGGI+IPH+RGC
Sbjct: 63  VPSASANATAAALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGC 122

Query: 122 EAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDI 181
           EAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVF++EAVRLMHEAGY+I
Sbjct: 123 EAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYEI 182

Query: 182 GNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV 230
           GNLDATLILQRPKLSPHKEAIRANLSELLGADP+VVNLKAKTHEKVDSLGENRSIAAHTV
Sbjct: 183 GNLDATLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTV 242

The following BLAST results are available for this feature:
BLAST of Cla014654 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ISPF_ARATH3.1e-8781.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop... [more]
ISPF_CATRO3.2e-8469.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan... [more]
ISPF_ORYSJ1.7e-8269.262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa... [more]
ISPF_RALPJ1.9e-4151.902-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (st... [more]
ISPDF_ERYLH2.5e-4147.27Bifunctional enzyme IspD/IspF OS=Erythrobacter litoralis (strain HTCC2594) GN=is... [more]
BLAST of Cla014654 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWV1_CUCSA3.3e-11290.132-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_... [more]
W9SB94_9ROSA9.3e-9174.382-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus notabilis GN=L484... [more]
A0A0M3SH19_MORAL1.0e-8971.952-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1[more]
A0A0D2QHJ5_GOSRA1.3e-8978.222-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium raimondii GN=... [more]
A0A061G6M7_THECC2.3e-8977.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_... [more]
BLAST of Cla014654 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102205|ref|XP_008452007.1|6.3e-11793.91PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|449457594|ref|XP_004146533.1|4.7e-11290.13PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|703160811|ref|XP_010112628.1|1.3e-9074.382-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Morus notabilis][more]
gi|225426150|ref|XP_002278406.1|1.1e-8975.76PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|927030530|gb|ALD62475.1|1.5e-8971.952-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase [Morus alba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003526MECDP_synthase
IPR020555MECDP_synthase_CS
Vocabulary: Molecular Function
TermDefinition
GO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0016114terpenoid biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009637 response to blue light
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0009744 response to sucrose
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0010155 regulation of proton transport
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function GO:0016829 lyase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU35997watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla014654Cla014654.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU35997WMU35997transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseGENE3DG3DSA:3.30.1330.50coord: 71..228
score: 7.7
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseHAMAPMF_00107IspFcoord: 73..228
score: 33
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthasePFAMPF02542YgbBcoord: 73..226
score: 1.6
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseTIGRFAMsTIGR00151TIGR00151coord: 74..228
score: 1.3
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseunknownSSF69765IpsF-likecoord: 72..228
score: 7.33
IPR0205552-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved sitePROSITEPS01350ISPFcoord: 107..122
scor
NoneNo IPR availablePANTHERPTHR32125FAMILY NOT NAMEDcoord: 67..229
score: 2.1