Cp4.1LG01g00240 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g00240
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
LocationCp4.1LG01 : 3767849 .. 3770400 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCAGTCATGCCCACCCCCAAGCGGCTCGGTTCCTACGCACCCTTTTCTCCGCCCCCAACACAAGTCAACCACACAACCCACCTCCACTCACCTCTTCGCTTGCCCTTTCCATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCCTCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCTGATGGTAATTTCTTTGCTTCTAGTTTGTTTTCCTGTTTCCGTGTTCTTGTTGGTTGCTGTTCTGCTGAAGAATTAGGGAATCTTCTTACGAACTTGATTGTTTGTATTCTAATTCTTTAAATAATTAGCTCAATTTTGTTGGTTTCGTTCATTTCTTGATTGCAGCAATGATGAATTCTAAATTTCTACATGGAATGAGGGAATTTTATATGTAAAAACTTTTAAATTTTGAAGTGGTTCTTTGTTTTGTTGATTTAGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTAAGTAGTTCTGGCATACCAAATTCAAACTCACTGCCAAGTTTTGTTATCCTCTTTGCCTTGATTAATTTAAAATGATCTTAGGATTCTCTGGTTGCTTTGCTTTCATACTTGATATTATGTTACCTTTATGTTTGCTTGAAGTTCACTTTAGGGGGACTAGTATGACCAATAATAAGATGATGAAAAGTATAAGAAAGTAGAGCTTTTATTTGAGATTGTAGGGAAAAATGAATGCCTTTTAGAGAATATTAATGAATTTCTTCGTTAAAAGAAAGAAAAATTGATATGAATGTTGTTGGAAGATAGACTATGTGAGATCCCACGTCTGTTGGGGAGGAGAACAGAACATTCTTTATAAGGGTGTGAAAACCTCTCCCTAACAGACGTGTTTTAAAAACCTTGAGGAGAACCCCGAAAGGGAAGGCCCAAAGAGAACAATATCTAGTAGCGGTGGGCTTGCACCGTTACAAATGGTATTAGAGCCAGACACCGGGCGATGTGCTAGTGGAAAGCTGAGCCTCGAAGGAGGGTGGACACAAGGCGGTGTGCCAGCGAGGAGCTGGGGCCTAAAAGAGGGTGGATTGTGAGATCTCACATCGGTTGGGAGAAGAATGAAATATTCTTTTTAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAAATCTTGAGGAAGAGCACGAAAGGGAAAGCCCAAAGAAGACAATATCTGCTAGCGGTGGGCTTTTCCAATTCACATTTGTATCAAAAGAGAAGAAGCTGCAAATCTTATAACCTTGGATTTCCCTTTTACTTCCCCCTTTGAAGAATACCATATGTTTCTTTGGCCACTAAATGTAGTAGGGTCATGTAGCTGTCTTGTGTGAAATATTTTGGTGCACGTAAGCTAGCTTGGATACTCATAGATAAAAGATGTACGTGCACGTTAGCTAGCTTGGACACTCGCAGATAAAGAAAAGAATGGTGAGGTAAACATCCCTAATGAGTCTCAGGGAAAGGTAATCAATAATGAGAGACCTTTGTTTCACCTGCTTTGTAGTTCTTCAATTTTTGTTAAACTATTGATTCATGTGTGCTTAAATATCATCCCAAAGTGAACACATAGAACATTGTAGAGGTATAAATTTTAGACTTTCTCCTCTAATCTCGTATGACCATATTAAAACACCACGGAATTTGAGGCCGATGAATCCATCTAGTAACCGGAAGTCGAAGTAAATAGTTTGAATTCGGTCTATTTTAGACTAAATAATGTTCCATTTTGTGATTGATGAGGATGTTTGGTGTTAATTTTGGGTGACATTCCAGGTGAGACTGATGCATGACGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCTGACCCATCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATATGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTAATCATTCAACAACGTTAAAATGAAAATGATATGGTCAA

mRNA sequence

GGCAGTCATGCCCACCCCCAAGCGGCTCGGTTCCTACGCACCCTTTTCTCCGCCCCCAACACAAGTCAACCACACAACCCACCTCCACTCACCTCTTCGCTTGCCCTTTCCATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCCTCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCTGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCATGACGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCTGACCCATCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATATGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTAATCATTCAACAACGTTAAAATGAAAATGATATGGTCAA

Coding sequence (CDS)

ATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCCTCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCTGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCATGACGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCTGACCCATCTGTCGTGAATCTGAAGGCAAAAACGCACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAG

Protein sequence

MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Homology
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BLAST of Cp4.1LG01g00240 vs. Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.6e-86
Identity = 161/197 (81.73%), Postives = 174/197 (88.32%), Query Frame = 1 

Query: 40  SSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHDAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSL 219
           VRLM +AGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGADPSVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 231

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BLAST of Cp4.1LG01g00240 vs. Swiss-Prot
Match: ISPF_ORYSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPF PE=2 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.9e-84
Identity = 156/200 (78.00%), Postives = 177/200 (88.50%), Query Frame = 1 

Query: 39  SSSSSRPSIRVNSAASPSVEAATAVDSDR--AAASDSRSKALPFRIGHGFDLHRLEPGYP 98
           S+S +RPS+R+     PS  AA AV ++   A A+  +  ALPFR+GHGFDLHRLEPG P
Sbjct: 26  SASPARPSLRLRR---PSTLAAAAVQAEHQPAVAAAPKPPALPFRVGHGFDLHRLEPGLP 85

Query: 99  LIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI 158
           LIIGGI+IPHDRGC+AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDP+WKGA SSVF+
Sbjct: 86  LIIGGIDIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPRWKGADSSVFM 145

Query: 159 KEAVRLMHDAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKV 218
           +EAV+LMH+AGYE+GNLDATLILQ+PK+SP KE IR+NL DLLGADPSVVNLKAKTHEKV
Sbjct: 146 REAVKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKV 205

Query: 219 DSLGENRSIAAHTVVLLMRR 237
           DSLGENRSIAAHTVVLLMR+
Sbjct: 206 DSLGENRSIAAHTVVLLMRK 222

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BLAST of Cp4.1LG01g00240 vs. Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 9.5e-84
Identity = 165/233 (70.82%), Postives = 189/233 (81.12%), Query Frame = 1 

Query: 14  ATTSHQSLSLSVYPRSFPRTNF--NVVSSSSSRPS-IRVNSAASPSVE-------AATAV 73
           AT+ + S ++     +  R NF  + V  S + PS IR+++  S ++        +  AV
Sbjct: 4   ATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAV 63

Query: 74  DSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV 133
           +++   A+ + SK L FR+GHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV
Sbjct: 64  EAEPKFAAVTPSKILSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV 123

Query: 134 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLILQRPK 193
           VDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLM +AGYE+GNLDATLILQRPK
Sbjct: 124 VDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPK 183

Query: 194 LSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           +SPHKEAIR NL  LLGADP VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 184 VSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236

[Close]
BLAST of Cp4.1LG01g00240 vs. Swiss-Prot
Match: ISPF_CUPMC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=ispF PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-43
Identity = 84/156 (53.85%), Postives = 110/156 (70.51%), Query Frame = 1 

Query: 81  RIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140
           RIG G+D+H L PG  LI+GG++IPHDRG   HSD D LLH V DA+ GA  L DIG+ F
Sbjct: 7   RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHF 66

Query: 141 PDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLG 200
           PD+DP + GA S V ++EAVR + +AGYEIGN+DAT+I Q+PKL+PH   + ANL++ LG
Sbjct: 67  PDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLG 126

Query: 201 ADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
              +  N+KAKT+EK+   G+   I A   VL+ RR
Sbjct: 127 LPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162

[Close]
BLAST of Cp4.1LG01g00240 vs. Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.8e-43
Identity = 79/153 (51.63%), Postives = 108/153 (70.59%), Query Frame = 1 

Query: 81  RIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140
           RIGHG+D+H  + G  +++GG+ IPH +   AHSDGDVL+H + DA+LGA  L DIG+ F
Sbjct: 5   RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHF 64

Query: 141 PDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLG 200
           PD+DP +KGA S V ++  V L+H+ GY +GN+DAT+I Q PK++PH EA+RANL+D LG
Sbjct: 65  PDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLG 124

Query: 201 ADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 234
                VN+KA T E++   G    IAAH V L+
Sbjct: 125 VALECVNVKATTTERLGFAGREEGIAAHAVALI 157

[Close]
BLAST of Cp4.1LG01g00240 vs. TrEMBL
Match: A0A0A0KWV1_CUCSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_4G049620 PE=3 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 8.3e-103
Identity = 199/239 (83.26%), Postives = 210/239 (87.87%), Query Frame = 1 

Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSS---SSSRPSIRVNSAASPSV 60
           MA+  P+FAS   ATTSHQSLSLS+YP SFP T F  +SS   SSS PS RVNSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  EAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGD 120
            + TA+ SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGD
Sbjct: 61  SSTTAIKSD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGD 120

Query: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATL 180
           VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMH+AGY+IGNLDATL
Sbjct: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATL 180

Query: 181 ILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           ILQRPKLSPHKEAIRA LS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 ILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of Cp4.1LG01g00240 vs. TrEMBL
Match: W9SB94_9ROSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus notabilis GN=L484_006708 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.1e-90
Identity = 179/237 (75.53%), Postives = 202/237 (85.23%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRP-SIRVNS------AASPSVEA 66
           ++AS+    +S +  SLS +PRS   T  N  +  SS P S+R++S      +A PS  A
Sbjct: 8   LYASSLLPKSSAKYPSLSSFPRSSLFTPPNSTNLFSSSPLSLRLSSTTTPPPSAVPSASA 67

Query: 67  ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVL 126
           A A+++  + AS +  K+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSDGDVL
Sbjct: 68  AAALEAQPSPASATPLKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVL 127

Query: 127 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLIL 186
           LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMH+AGYEIGNLDATLIL
Sbjct: 128 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 187

Query: 187 QRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           QRPKLSPHKEAIRANLS+LLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 188 QRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 244

[Close]
BLAST of Cp4.1LG01g00240 vs. TrEMBL
Match: A0A0M3SH19_MORAL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.4e-89
Identity = 177/241 (73.44%), Postives = 200/241 (82.99%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRS--FPRTNFNVVSSSSSRPSIRVNSAASPSVEA----- 66
           ++AS+    ++ +S SLS +PRS  F   N      SSS  S+R +S  +P   A     
Sbjct: 8   LYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSAVPSAS 67

Query: 67  ----ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSD 126
               A A+++  + AS + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSD
Sbjct: 68  ANATAAALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSD 127

Query: 127 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDA 186
           GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI+EAVRLMH+AGYEIGNLDA
Sbjct: 128 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYEIGNLDA 187

Query: 187 TLILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 237
           TLILQRPKLSPHKEAIRANLS+LLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR
Sbjct: 188 TLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 247

[Close]
BLAST of Cp4.1LG01g00240 vs. TrEMBL
Match: B9GKD1_POPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Populus trichocarpa GN=POPTR_0001s09860g PE=3 SV=2)

HSP 1 Score: 334.0 bits (855), Expect = 1.5e-88
Identity = 165/229 (72.05%), Postives = 192/229 (83.84%), Query Frame = 1 

Query: 8   FASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDR 67
           ++  TT T +++S+S+ + P ++   +         R ++ +++A++      TA+  D 
Sbjct: 13  YSPITTKTRNNKSVSIPLQPGAYISRHVKFAVPIQKRTTLSISAAST------TAIQVDG 72

Query: 68  AAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAI 127
              S   SK LPFR+GHGFDLHRLEPGYPLIIGGI++PHDRGCEAHSDGDVLLHCVVDA+
Sbjct: 73  PTTSSKASKTLPFRVGHGFDLHRLEPGYPLIIGGIDVPHDRGCEAHSDGDVLLHCVVDAV 132

Query: 128 LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLILQRPKLSPH 187
           LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMH+AGYEIGNLDATLILQRPKLSPH
Sbjct: 133 LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPH 192

Query: 188 KEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           KEAIRANLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLM++
Sbjct: 193 KEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMKK 235

[Close]
BLAST of Cp4.1LG01g00240 vs. TrEMBL
Match: A0A061G6M7_THECC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_016340 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 4.4e-88
Identity = 175/234 (74.79%), Postives = 193/234 (82.48%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRSFPRTNFNVV----SSSSSRPSIRVNSAASPSVEAATA 66
           + A  T  T S++S+ L   PR     + N +    SSSSS  +  + ++ SP    AT+
Sbjct: 127 IIAKPTPTTISNKSILLP-NPRIITARHHNNILQSASSSSSSSAFTLTASISPG---ATS 186

Query: 67  VDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHC 126
           V  D    S   SK+LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHC
Sbjct: 187 VAVDGPTTSTKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHC 246

Query: 127 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLILQRP 186
           VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMH+ GYEIGNLDATLILQRP
Sbjct: 247 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEVGYEIGNLDATLILQRP 306

Query: 187 KLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           KLSPHKEAI+ANLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 307 KLSPHKEAIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 356

[Close]
BLAST of Cp4.1LG01g00240 vs. TAIR10
Match: AT1G63970.1 (AT1G63970.1 isoprenoid F)

HSP 1 Score: 320.5 bits (820), Expect = 8.8e-88
Identity = 161/197 (81.73%), Postives = 174/197 (88.32%), Query Frame = 1 

Query: 40  SSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHDAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSL 219
           VRLM +AGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGADPSVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 231

[Close]
BLAST of Cp4.1LG01g00240 vs. NCBI nr
Match: gi|659102205|ref|XP_008452007.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 387.1 bits (993), Expect = 2.2e-104
Identity = 200/236 (84.75%), Postives = 209/236 (88.56%), Query Frame = 1 

Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAV  P FAS   ATTSHQS SLS YP SFPR  F  +SSSSS PS RVNSA S SV + 
Sbjct: 1   MAVSAPFFASPPAATTSHQSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSST 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TA++SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLL
Sbjct: 61  TAIESD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMH+AGY+IGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           RPKLSPHKEAIRANLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]
BLAST of Cp4.1LG01g00240 vs. NCBI nr
Match: gi|449457594|ref|XP_004146533.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 381.3 bits (978), Expect = 1.2e-102
Identity = 199/239 (83.26%), Postives = 210/239 (87.87%), Query Frame = 1 

Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSS---SSSRPSIRVNSAASPSV 60
           MA+  P+FAS   ATTSHQSLSLS+YP SFP T F  +SS   SSS PS RVNSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  EAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGD 120
            + TA+ SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGD
Sbjct: 61  SSTTAIKSD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGD 120

Query: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATL 180
           VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMH+AGY+IGNLDATL
Sbjct: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATL 180

Query: 181 ILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           ILQRPKLSPHKEAIRA LS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 ILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of Cp4.1LG01g00240 vs. NCBI nr
Match: gi|703160811|ref|XP_010112628.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Morus notabilis])

HSP 1 Score: 340.1 bits (871), Expect = 3.1e-90
Identity = 179/237 (75.53%), Postives = 202/237 (85.23%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRP-SIRVNS------AASPSVEA 66
           ++AS+    +S +  SLS +PRS   T  N  +  SS P S+R++S      +A PS  A
Sbjct: 8   LYASSLLPKSSAKYPSLSSFPRSSLFTPPNSTNLFSSSPLSLRLSSTTTPPPSAVPSASA 67

Query: 67  ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVL 126
           A A+++  + AS +  K+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSDGDVL
Sbjct: 68  AAALEAQPSPASATPLKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVL 127

Query: 127 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLIL 186
           LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMH+AGYEIGNLDATLIL
Sbjct: 128 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 187

Query: 187 QRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           QRPKLSPHKEAIRANLS+LLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 188 QRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 244

[Close]
BLAST of Cp4.1LG01g00240 vs. NCBI nr
Match: gi|720017076|ref|XP_010261353.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 340.1 bits (871), Expect = 3.1e-90
Identity = 184/243 (75.72%), Postives = 205/243 (84.36%), Query Frame = 1 

Query: 1   MAVPFPVFASATTA-TTSHQSLSLSVYPRSF-PRTNFNVVS----SSSSRPSIRVNSAAS 60
           MA+  P+FAS   A TT+  +L L +   SF P  N +  S    SSSSRPS+   S+ S
Sbjct: 1   MAMASPIFASVIPAKTTAKPTLFLPIASSSFRPCNNGSHFSPGRVSSSSRPSL---SSIS 60

Query: 61  PSVEA-ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAH 120
           P   A AT+V+ ++   S + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPHDRGCEAH
Sbjct: 61  PLTAASATSVEVEKEPTSRNSSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAH 120

Query: 121 SDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNL 180
           SDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGA SSVFIKEAVRLMH+AGYE+GNL
Sbjct: 121 SDGDVLLHCVVDAILGALGLPDIGQIFPDNDPKWKGAASSVFIKEAVRLMHEAGYELGNL 180

Query: 181 DATLILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 237
           DATLILQRPKLSPHKEAI+ANLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL
Sbjct: 181 DATLILQRPKLSPHKEAIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 240

[Close]
BLAST of Cp4.1LG01g00240 vs. NCBI nr
Match: gi|927030530|gb|ALD62475.1| (2-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase [Morus alba])

HSP 1 Score: 336.7 bits (862), Expect = 3.4e-89
Identity = 177/241 (73.44%), Postives = 200/241 (82.99%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRS--FPRTNFNVVSSSSSRPSIRVNSAASPSVEA----- 66
           ++AS+    ++ +S SLS +PRS  F   N      SSS  S+R +S  +P   A     
Sbjct: 8   LYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSAVPSAS 67

Query: 67  ----ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSD 126
               A A+++  + AS + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSD
Sbjct: 68  ANATAAALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSD 127

Query: 127 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDA 186
           GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI+EAVRLMH+AGYEIGNLDA
Sbjct: 128 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYEIGNLDA 187

Query: 187 TLILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 237
           TLILQRPKLSPHKEAIRANLS+LLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR
Sbjct: 188 TLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 247

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ISPF_ARATH1.6e-8681.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop... [more]
ISPF_ORYSJ1.9e-8478.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa... [more]
ISPF_CATRO9.5e-8470.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan... [more]
ISPF_CUPMC1.6e-4353.852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidura... [more]
ISPF_THISH2.8e-4351.632-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfid... [more]
BLAST of Cp4.1LG01g00240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWV1_CUCSA8.3e-10383.262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_... [more]
W9SB94_9ROSA2.1e-9075.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus notabilis GN=L484... [more]
A0A0M3SH19_MORAL2.4e-8973.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1[more]
B9GKD1_POPTR1.5e-8872.052-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Populus trichocarpa GN=... [more]
A0A061G6M7_THECC4.4e-8874.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_... [more]
BLAST of Cp4.1LG01g00240 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G63970.18.8e-8881.73 isoprenoid F[more]
BLAST of Cp4.1LG01g00240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102205|ref|XP_008452007.1|2.2e-10484.75PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|449457594|ref|XP_004146533.1|1.2e-10283.26PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|703160811|ref|XP_010112628.1|3.1e-9075.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Morus notabilis][more]
gi|720017076|ref|XP_010261353.1|3.1e-9075.72PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|927030530|gb|ALD62475.1|3.4e-8973.442-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase [Morus alba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016114terpenoid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Vocabulary: INTERPRO
TermDefinition
IPR020555MECDP_synthase_CS
IPR003526MECDP_synthase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009637 response to blue light
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0009744 response to sucrose
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0010155 regulation of proton transport
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005575 cellular_component
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00240.1Cp4.1LG01g00240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseGENE3DG3DSA:3.30.1330.50coord: 78..235
score: 2.1
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseHAMAPMF_00107IspFcoord: 80..235
score: 33
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthasePFAMPF02542YgbBcoord: 80..233
score: 3.2
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseTIGRFAMsTIGR00151TIGR00151coord: 81..235
score: 5.4
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseunknownSSF69765IpsF-likecoord: 79..235
score: 7.59
IPR0205552-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved sitePROSITEPS01350ISPFcoord: 114..129
scor
NoneNo IPR availablePANTHERPTHR32125FAMILY NOT NAMEDcoord: 78..236
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g00240Cucsa.106950Cucumber (Gy14) v1cgycpeB0239
Cp4.1LG01g00240CmaCh04G007250Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g00240CmoCh04G007690Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g00240Cla014654Watermelon (97103) v1cpewmB408
Cp4.1LG01g00240Csa4G049620Cucumber (Chinese Long) v2cpecuB406
Cp4.1LG01g00240MELO3C016339Melon (DHL92) v3.5.1cpemeB415
Cp4.1LG01g00240ClCG07G007880Watermelon (Charleston Gray)cpewcgB405
Cp4.1LG01g00240CSPI04G05930Wild cucumber (PI 183967)cpecpiB405
Cp4.1LG01g00240Lsi07G009020Bottle gourd (USVL1VR-Ls)cpelsiB379
Cp4.1LG01g00240MELO3C016339.2Melon (DHL92) v3.6.1cpemedB486
Cp4.1LG01g00240CsaV3_4G006100Cucumber (Chinese Long) v3cpecucB0503
Cp4.1LG01g00240Bhi01G001788Wax gourdcpewgoB0510
Cp4.1LG01g00240CsGy4G005800Cucumber (Gy14) v2cgybcpeB508
Cp4.1LG01g00240Carg14122Silver-seed gourdcarcpeB1302
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g00240Wild cucumber (PI 183967)cpecpiB431
Cp4.1LG01g00240Cucumber (Chinese Long) v2cpecuB432
Cp4.1LG01g00240Melon (DHL92) v3.5.1cpemeB362
Cp4.1LG01g00240Silver-seed gourdcarcpeB0839
Cp4.1LG01g00240Cucumber (Chinese Long) v3cpecucB0538
Cp4.1LG01g00240Cucurbita pepo (Zucchini)cpecpeB206
Cp4.1LG01g00240Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG01g00240Cucurbita maxima (Rimu)cmacpeB324
Cp4.1LG01g00240Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g00240Cucurbita moschata (Rifu)cmocpeB287
Cp4.1LG01g00240Cucurbita moschata (Rifu)cmocpeB313