Lsi07G002910 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G002910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	WD repeat-containing protein 18
Location	chr07 : 3111053 .. 3112381 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATGCCATCTTTCCCACAAGAAGTTGTCCTTGCGAGCTCTCCTGATGGCCCCATTATTGCCTATGGTGCCTCCACAGGCACCCCTCTAGCCAGCTTCAACAGTAGCCGTTCGCCTCGCCGTGGCATCACCCGAGCTGGGAAAAGTTTCATAGCCGTCTCCCACATCTGCCCGGTCACTGCTTCAGGTTCAATCCACATTTATAATTGGTGGACTTCAACTGCCTTCCAAAGCCTCACTGTCCCTGAACCTGTTGCCCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTACATCCATACTCTCTCTCTTCCATCAGGGGATGTTCTCAACTCTCTACCTGCACACAAGAAACCAGTCTCTTGCCTTAAACTTAGTGCTGATGGATCACTTCTCATTTCAGGTGGGGATGATGGCACAATTGTTATTATCCCAATCTTTCAACTTGTACAAGCCAAACCACAAGAAAATGCAACCAAACACATTCTGCATCAGTTTTTAGCACATACTGATTCAGTGACTTCCATTTACTCTGGCATGGGCATGTCCAGTTCCCAAATAGTCTCCTGCTCATTGGATGGCAGATGCAAATTCTGGAGCTTACTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCCTGTGCCATTTTCAGTGTTGTCTTAGACCCAACAGAGACAGAGCTTTTCGCCGCAGGATCTGATGGGTTGGTGTACAAGAGCTCGTTGAGACATAACAACAAACACCATATGGGCACAGACTATGAACTAATTCCACCAGTCTCCAACGACATGGTGTACAAGCGCTCATTGAGGCATAAAAACAAACATCATATGGGCACAAGCTCTGAACTAATTCCATGGTCGCCAAAGCACGAGGCTGCAGTTGTTTCTATAGTCATAGTCAACGAAGGAAAGCACTTAATATCTGCAGCAGAAGATGGGAGCATCTGGGTCTGGGAAGTGAAGAAAGGGCAGGTCATAATGGCCCTCGAAAATGAGATAGGAAGAATAAGCGATTTGGTGATGGCCACAGAAAAAGGCCATGGAAAAGAAAAGAGTGACAGAACAGGCAGCCATGGAAGAGCAATGGAAATTAGTGAGAGGTTTAGATTACCCATTAAGATGTTGGGGTTGTCAATAAATCAAACAGTTGATATGCAAGGCACGGTGGCGGCGGCCGGAAGCGACACGAGGAGAGCCATTGAGATGCTGGAATCTGCCATTGCTGTGTATGAGAAGATGTTGGAATTAATCCTCAAGGAAGCCAAAGCAAGCTACAATCAAAGAGAAGAAACACAAGGATAG

mRNA sequence

ATGACTATGCCATCTTTCCCACAAGAAGTTGTCCTTGCGAGCTCTCCTGATGGCCCCATTATTGCCTATGGTGCCTCCACAGGCACCCCTCTAGCCAGCTTCAACAGTAGCCGTTCGCCTCGCCGTGGCATCACCCGAGCTGGGAAAAGTTTCATAGCCGTCTCCCACATCTGCCCGGTCACTGCTTCAGGTTCAATCCACATTTATAATTGGTGGACTTCAACTGCCTTCCAAAGCCTCACTGTCCCTGAACCTGTTGCCCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTACATCCATACTCTCTCTCTTCCATCAGGGGATGTTCTCAACTCTCTACCTGCACACAAGAAACCAGTCTCTTGCCTTAAACTTAGTGCTGATGGATCACTTCTCATTTCAGGTGGGGATGATGGCACAATTGTTATTATCCCAATCTTTCAACTTGTACAAGCCAAACCACAAGAAAATGCAACCAAACACATTCTGCATCAGTTTTTAGCACATACTGATTCAGTGACTTCCATTTACTCTGGCATGGGCATGTCCAGTTCCCAAATAGTCTCCTGCTCATTGGATGGCAGATGCAAATTCTGGAGCTTACTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCCTGTGCCATTTTCAGTGTTGTCTTAGACCCAACAGAGACAGAGCTTTTCGCCGCAGGATCTGATGGGTTGGTGTACAAGAGCTCGTTGAGACATAACAACAAACACCATATGGGCACAGACTATGAACTAATTCCACCAGTCTCCAACGACATGGTGTACAAGCGCTCATTGAGGCATAAAAACAAACATCATATGGGCACAAGCTCTGAACTAATTCCATGGTCGCCAAAGCACGAGGCTGCAGTTGTTTCTATAGTCATAGTCAACGAAGGAAAGCACTTAATATCTGCAGCAGAAGATGGGAGCATCTGGGTCTGGGAAGTGAAGAAAGGGCAGGTCATAATGGCCCTCGAAAATGAGATAGGAAGAATAAGCGATTTGGTGATGGCCACAGAAAAAGGCCATGGAAAAGAAAAGAGTGACAGAACAGGCAGCCATGGAAGAGCAATGGAAATTAGTGAGAGGTTTAGATTACCCATTAAGATGTTGGGGTTGTCAATAAATCAAACAGTTGATATGCAAGGCACGGTGGCGGCGGCCGGAAGCGACACGAGGAGAGCCATTGAGATGCTGGAATCTGCCATTGCTGTGTATGAGAAGATGTTGGAATTAATCCTCAAGGAAGCCAAAGCAAGCTACAATCAAAGAGAAGAAACACAAGGATAG

Coding sequence (CDS)

ATGACTATGCCATCTTTCCCACAAGAAGTTGTCCTTGCGAGCTCTCCTGATGGCCCCATTATTGCCTATGGTGCCTCCACAGGCACCCCTCTAGCCAGCTTCAACAGTAGCCGTTCGCCTCGCCGTGGCATCACCCGAGCTGGGAAAAGTTTCATAGCCGTCTCCCACATCTGCCCGGTCACTGCTTCAGGTTCAATCCACATTTATAATTGGTGGACTTCAACTGCCTTCCAAAGCCTCACTGTCCCTGAACCTGTTGCCCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTACATCCATACTCTCTCTCTTCCATCAGGGGATGTTCTCAACTCTCTACCTGCACACAAGAAACCAGTCTCTTGCCTTAAACTTAGTGCTGATGGATCACTTCTCATTTCAGGTGGGGATGATGGCACAATTGTTATTATCCCAATCTTTCAACTTGTACAAGCCAAACCACAAGAAAATGCAACCAAACACATTCTGCATCAGTTTTTAGCACATACTGATTCAGTGACTTCCATTTACTCTGGCATGGGCATGTCCAGTTCCCAAATAGTCTCCTGCTCATTGGATGGCAGATGCAAATTCTGGAGCTTACTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCCTGTGCCATTTTCAGTGTTGTCTTAGACCCAACAGAGACAGAGCTTTTCGCCGCAGGATCTGATGGGTTGGTGTACAAGAGCTCGTTGAGACATAACAACAAACACCATATGGGCACAGACTATGAACTAATTCCACCAGTCTCCAACGACATGGTGTACAAGCGCTCATTGAGGCATAAAAACAAACATCATATGGGCACAAGCTCTGAACTAATTCCATGGTCGCCAAAGCACGAGGCTGCAGTTGTTTCTATAGTCATAGTCAACGAAGGAAAGCACTTAATATCTGCAGCAGAAGATGGGAGCATCTGGGTCTGGGAAGTGAAGAAAGGGCAGGTCATAATGGCCCTCGAAAATGAGATAGGAAGAATAAGCGATTTGGTGATGGCCACAGAAAAAGGCCATGGAAAAGAAAAGAGTGACAGAACAGGCAGCCATGGAAGAGCAATGGAAATTAGTGAGAGGTTTAGATTACCCATTAAGATGTTGGGGTTGTCAATAAATCAAACAGTTGATATGCAAGGCACGGTGGCGGCGGCCGGAAGCGACACGAGGAGAGCCATTGAGATGCTGGAATCTGCCATTGCTGTGTATGAGAAGATGTTGGAATTAATCCTCAAGGAAGCCAAAGCAAGCTACAATCAAAGAGAAGAAACACAAGGATAG

Protein sequence

MTMPSFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLPAHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVTSIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSDGLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKEKSDRTGSHGRAMEISERFRLPIKMLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAVYEKMLELILKEAKASYNQREETQG

Homology

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BLAST of Lsi07G002910 vs. Swiss-Prot
Match: RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-33
Identity = 97/321 (30.22%), Postives = 146/321 (45.48%), Query Frame = 1


Query: 10  VVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHIY 69
           V+ +SS D  I ++   TGT    F    SP  G+T  G+ F+A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLPAHKKPVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H + V+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVTSIYSGMG 189
           CL  S D SLL+SG  DG+I +  + +L     ++       H F  HT SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSDGLVYKSS 249
             ++ I+S S D  CK WSL  G +L  ++FP  I ++ LDP     +A   D  +Y  +
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGA 244

Query: 250 LRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAAVVSIVIV 309
           +   +++  GT                         +G+ SE          A+  +   
Sbjct: 245 INATSEY--GTQV-----------------------LGSVSE-------KGKAITCLAYC 293

Query: 310 NEGKHLISAAEDGSIWVWEVK 331
            +G  LIS +EDG + VW+ K
Sbjct: 305 ADGNLLISGSEDGVVCVWDPK 293

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BLAST of Lsi07G002910 vs. Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-23
Identity = 86/336 (25.60%), Postives = 152/336 (45.24%), Query Frame = 1


Query: 7   PQEVVLASSPDGPI---IAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTAS 66
           P EVV+ +    P+   + +   +G  L ++   ++  RG+      ++  +        
Sbjct: 4   PMEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------Q 63

Query: 67  GSIHIYNWWTSTAFQ---SLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNS 126
           G  +I  W      Q    +  P PV  LT  P+G Y+ AG ++  I+   + +G++L  
Sbjct: 64  GKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVI 123

Query: 127 LPAHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQEN-ATKHILHQFLAHTD 186
           L  H + VSCLK + DGS  +S G D  ++   +  ++QA P    A +H+  Q   HT 
Sbjct: 124 LSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPRHVWSQ---HTL 183

Query: 187 SVTSIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAA 246
            +T ++ G G   +++ + SLD   K W++ SG +L +V+F   I SV +D  E  +F  
Sbjct: 184 PITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCG 243

Query: 247 GSDGLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKH 306
           GSDG +++  L          +    P  +   V+K    H+N+                
Sbjct: 244 GSDGSIFQVDLCSRPGPR---EQSFQPEQNTGKVFK---GHRNQ---------------- 303

Query: 307 EAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVI 336
              V  + +  +G  L+S + D S+ +W+VK  Q +
Sbjct: 304 ---VTCLSVSTDGSILLSGSHDESVRLWDVKSKQCV 304

[Close]

BLAST of Lsi07G002910 vs. Swiss-Prot
Match: WDR18_DANRE (WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-22
Identity = 89/342 (26.02%), Postives = 150/342 (43.86%), Query Frame = 1


Query: 5   SFPQEVVLASSPDGPII---AYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVT 64
           S P EVVL++   G +     Y   TG+   S+    +  R +T     +I  + +    
Sbjct: 2   SAPVEVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL---- 61

Query: 65  ASGSIHIYNWWTSTAFQ---SLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVL 124
             G  +I  W      Q    +  P  V  L A+PDG Y+ AG ++  I+   + +G++L
Sbjct: 62  --GKNYINVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAG-IAEAIYLWEVSTGNLL 121

Query: 125 NSLPAHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHT 184
             L  H + +SC+K + D S  +SGG D    I  +  +VQ     + T    H    H+
Sbjct: 122 AILSRHFQDLSCIKFTDDSSHFVSGGKDNLAFIWNLSSVVQL--DSSRTPEPRHILSRHS 181

Query: 185 DSVTSIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFA 244
             +T I+ G+    +++ + SLD   K W + SG +L +V+F   I SV  DP E  LF 
Sbjct: 182 LPITDIHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFC 241

Query: 245 AGSDGLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPK 304
            GSDG +++ SL   +             +S D  ++            + SE       
Sbjct: 242 GGSDGNIFQVSLCSTS-------------LSRDKTFQ------------SDSEGNQVFKG 301

Query: 305 HEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALEN 341
           H   V  + +  +G  L+S + D ++ +W+V+  Q I  + +
Sbjct: 302 HRNLVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTINH 309

[Close]

BLAST of Lsi07G002910 vs. Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-22
Identity = 80/335 (23.88%), Postives = 150/335 (44.78%), Query Frame = 1


Query: 7   PQEVVLASSPDGPI---IAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTAS 66
           P EV + +    P+   I +   +G  L ++   ++  RG+      ++  + +      
Sbjct: 4   PMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------ 63

Query: 67  GSIHIYNWWTSTAFQ---SLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNS 126
           G  +I  W      Q    +  P PV  LTA+P+G Y+ AG ++  IH   + +G++L  
Sbjct: 64  GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVI 123

Query: 127 LPAHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDS 186
           L  H + VSCL+ + D S  ISGG D  +++  +  ++QA P         H +  H   
Sbjct: 124 LSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHALP 183

Query: 187 VTSIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAG 246
           +T ++ G G   +++ + SLD   K W + SG +L +V+F  +I +V +D  E  +F  G
Sbjct: 184 ITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGG 243

Query: 247 SDGLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHE 306
           S+G +++                       D+      R ++ H    + ++      H 
Sbjct: 244 SEGSIFQV----------------------DLFTWPGQRERSFHPEQDAGKVF---KGHR 303

Query: 307 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVI 336
             V  + +  +G  L+S + D ++ +W+V+  Q I
Sbjct: 304 NQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCI 304

[Close]

BLAST of Lsi07G002910 vs. Swiss-Prot
Match: WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-22
Identity = 85/336 (25.30%), Postives = 151/336 (44.94%), Query Frame = 1


Query: 7   PQEVVLASSPDGPI---IAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTAS 66
           P EVV+ +     +   + +   +G  L ++   ++  RG+      ++  +        
Sbjct: 4   PMEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------Q 63

Query: 67  GSIHIYNWWTSTAFQ---SLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNS 126
           G  +I  W      Q    +  P PV  LT  P+G Y+ AG ++  I+   + +G++L  
Sbjct: 64  GKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVI 123

Query: 127 LPAHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQEN-ATKHILHQFLAHTD 186
           L  H + VSCLK + DGS  +S G D   +   +  ++QA P    A +H+  Q   HT 
Sbjct: 124 LSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPRHVWSQ---HTL 183

Query: 187 SVTSIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAA 246
            +T ++ G G   +++ + SLD   K W++ SG +L +V+F   I SV +D  E  +F  
Sbjct: 184 PITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCG 243

Query: 247 GSDGLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKH 306
           GSDG +++  L          ++   P  +   V+K    H+N+                
Sbjct: 244 GSDGSIFQVDL---CSWPGLREHSFQPEQNTGKVFK---GHRNQ---------------- 303

Query: 307 EAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVI 336
              V  + +  +G  L+S + D S+ +W+VK  Q +
Sbjct: 304 ---VTCLSVSTDGSVLLSGSHDESVRLWDVKSKQCL 304

[Close]

BLAST of Lsi07G002910 vs. TrEMBL
Match: A0A0A0L0D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1)

HSP 1 Score: 783.1 bits (2021), Expect = 1.8e-223
Identity = 395/442 (89.37%), Postives = 415/442 (93.89%), Query Frame = 1


Query: 1   MTMPSFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPV 60
           MTMPS PQEVVLASSPDGPI+AY ASTGT LASFNSSRSPRRGITRAGKSFIAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNS 120
           TASGSIHIYNWWTS+AFQ LTVPEPVAPLTATPDGFYLFAGGLSGYIH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDS 180
           LPAHKKPVSCLKLSADGSLLISGGDDGTIV++PIFQLVQAKP+ENAT+HILHQFLAHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAG 240
           VTSIYSGMG+SS+QIVSCSLDGRCK W+LLSGT+LHTVVFPCAIFSVVL+P+ETE FAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 SDGLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHE 300
           SDGLVYK SL HNNK   GTDYELIP +SND+VY+RSLRHKNKH  GTSSELIPWS KHE
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKEK 360
           AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENE+G ISDLVMATE+ HGKE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 SDRTGSHGRAMEISERFRLPIKMLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAVYE 420
             +T SHG AMEISERFRLPIKMLGLSI QTV+MQG V AAGSD  RAIEMLESAIAVYE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKASYNQREETQG 443
           KMLELILKEAKASYNQREETQG
Sbjct: 421 KMLELILKEAKASYNQREETQG 442

[Close]

BLAST of Lsi07G002910 vs. TrEMBL
Match: M5WIZ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 7.5e-121
Identity = 240/429 (55.94%), Postives = 290/429 (67.60%), Query Frame = 1


Query: 3   MPSFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M S P E+VL SSPDGPIIAY AS+G  LA F  SRSPRRG+   GKS+IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRRGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+STAF +L VPEPVAPLT T DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVPEPVAPLTVTSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVT 182
           AH KPVSCL +S D SLLISG DDGTIV++PIFQLV A   ++  + ILH+F AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDSVEELILHRFAAHSDSVT 180

Query: 183 SIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSD 242
           +I SGMG+ +SQI+SCSLD  CKFWSLL GT+L T+VFPC I  V L+PT+ E + AGSD
Sbjct: 181 AIVSGMGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTQPEFYVAGSD 240

Query: 243 GLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAA 302
           G V+K SL+                     V  R L       +   SELI W+PKH  A
Sbjct: 241 GSVHKGSLK---------------------VGSRQL-------VTQGSELIAWTPKHGGA 300

Query: 303 VVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKEKSD 362
           VVS+V+VN G++LISA+EDGS+WVWEV  GQVIMAL NE+G ISDLV AT          
Sbjct: 301 VVSMVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAAT---------- 360

Query: 363 RTGSHGRAMEISERFRLPIKMLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAVYEKM 422
                                 G++ ++  D+   +  A +D  RAI+MLESAIA+YE++
Sbjct: 361 ----------------------GINCSKANDV---LKVAANDRNRAIDMLESAIAMYERL 366

Query: 423 LELILKEAK 432
           LELILKEAK
Sbjct: 421 LELILKEAK 366

[Close]

BLAST of Lsi07G002910 vs. TrEMBL
Match: W9R444_9ROSA (WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.1e-111
Identity = 228/439 (51.94%), Postives = 294/439 (66.97%), Query Frame = 1


Query: 3   MPSFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M S P EV+L SSP+GPIIAY AS+G  +  F  SRSPRRG+   GK FIA SHI PVTA
Sbjct: 1   MSSSPHEVILTSSPEGPIIAYDASSGASVTCFTGSRSPRRGLALVGKIFIAASHISPVTA 60

Query: 63  SGSIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLP 122
           SGSIHIYNWW+STAF  L VPEPVAPL  TPDG YLFAGGLSG ++ LS+PSGDVL S+ 
Sbjct: 61  SGSIHIYNWWSSTAFHKLPVPEPVAPLIGTPDGSYLFAGGLSGSVYALSVPSGDVLRSVH 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVT 182
           AHKK VSCL++S DGSLLISG DDGTIV+IPIFQLV +   ++  + I+H+  AH+ +VT
Sbjct: 121 AHKKSVSCLRISEDGSLLISGSDDGTIVVIPIFQLVGSSINQDMDQLIMHKLAAHSGAVT 180

Query: 183 SIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSD 242
            I SG  + +SQI+SCSLD  CKFWSLL GT L TVVFP  I  +VL+P+E+E +AAGSD
Sbjct: 181 DIISGKELCNSQIISCSLDCTCKFWSLLRGTHLRTVVFPSTILGLVLNPSESEFYAAGSD 240

Query: 243 GLVYKSSLRHNNKH---HMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKH 302
           G VYK S++  ++      G D+EL+                              +  H
Sbjct: 241 GSVYKGSIKVGSRRIPSSKGQDHELV-----------------------------IAQNH 300

Query: 303 EAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIG-RISDLVMATEKGHGK 362
             A+VS+ +VN G++L+SA+EDG +++ ++  GQV++AL NE G  ISDLV+AT  G GK
Sbjct: 301 NGAIVSLAMVNSGRNLVSASEDGGVYIQKIDDGQVVLALGNEFGSSISDLVVATGIGCGK 360

Query: 363 E-KSDRTGS---HGRAMEISERFRLPIKMLGLSINQTVDMQGTVAAAGSDTRRAIEMLES 422
           +    R GS    G  + +S R    + M    + + V+M+  +A A  D  RAI++LES
Sbjct: 361 DIVGSRLGSGEFDGVRIGLSGR---QVMMSSSPVKERVEMEDVLALAEKDRSRAIDLLES 407

Query: 423 AIAVYEKMLELILKEAKAS 434
           AIA+YE++LELILKEAK +
Sbjct: 421 AIAMYERLLELILKEAKGT 407

[Close]

BLAST of Lsi07G002910 vs. TrEMBL
Match: B9T1J9_RICCO (WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.7e-109
Identity = 219/440 (49.77%), Postives = 286/440 (65.00%), Query Frame = 1


Query: 9   EVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHI 68
           E+VL SSPDGPI AY   +GT LA F  SRSPR G+   GK++IA SHI   TASGSIH+
Sbjct: 7   EIVLTSSPDGPITAYDTISGTTLARFTGSRSPRHGLAIVGKAYIAASHISSATASGSIHL 66

Query: 69  YNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLPAHKKPV 128
           Y WW+S+A   L +PEPVAPL ATPDG YLFAGGL G ++ LS+PSG++L S PAH KPV
Sbjct: 67  YTWWSSSALHHLPLPEPVAPLAATPDGSYLFAGGLFGNVYALSIPSGNILKSFPAHSKPV 126

Query: 129 SCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVTSIYSGM 188
           SC+ +S+D SLLISGGDDG IV++PIFQLV+A   EN +  ILH F AH   VT I   M
Sbjct: 127 SCINISSDSSLLISGGDDGNIVVVPIFQLVEAPGSENESNLILHSFPAHDGPVTGITVCM 186

Query: 189 GMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSDGLVYKS 248
           G+    IVSCS D  CK WSLL G  L TV FPC+I  + LDPTE E +AAGS+GL+YK 
Sbjct: 187 GICHPTIVSCSTDSTCKLWSLLDGRNLQTVAFPCSISGIALDPTEVEFYAAGSNGLIYKG 246

Query: 249 SLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAAVVSIVI 308
           SL+  ++  +                                +LI W+ KH+ AVVS+V+
Sbjct: 247 SLQAGSRKGIAQ----------------------------GRKLITWTQKHDGAVVSVVV 306

Query: 309 VNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKE-KSDRTGSH 368
           +NEGK+L+SAAEDGS+++W ++ GQ+IM + N +  ISD+V+A     G+E   +R G+ 
Sbjct: 307 INEGKNLVSAAEDGSVFIWGIENGQLIMVIGNNMDNISDVVVARGICDGREGYGNRVGNE 366

Query: 369 -----GRAMEISER---FRLPIKMLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAVY 428
                GR + +S +   FR PIK        TV+++  +A A  ++R+AI+ LESAI VY
Sbjct: 367 MNEFGGRNLGLSSKELNFR-PIK-------DTVNVENALAVAAKNSRKAIDKLESAIGVY 410

Query: 429 EKMLELILKEAKASYNQREE 440
           E++LELILKEAKA  ++  E
Sbjct: 427 ERLLELILKEAKAGTSKNGE 410

[Close]

BLAST of Lsi07G002910 vs. TrEMBL
Match: A0A067KXT8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03563 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 5.5e-108
Identity = 221/439 (50.34%), Postives = 281/439 (64.01%), Query Frame = 1


Query: 9   EVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHI 68
           E+VL SSP GPI  Y   +GT LA F+ SRSPR G+  AGK++IA SHI   TASGSIH+
Sbjct: 7   EIVLTSSPHGPITVYDTVSGTTLARFSGSRSPRHGLVLAGKAYIAASHISSATASGSIHL 66

Query: 69  YNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLPAHKKPV 128
           YNWW+ TA   L VPEPVAPL +TPDG +LFAGGLSG I  LS+PSG+++ S+PAH KPV
Sbjct: 67  YNWWSPTALHHLPVPEPVAPLASTPDGLFLFAGGLSGDIFALSIPSGNIIKSVPAHHKPV 126

Query: 129 SCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVTSIYSGM 188
           S LK+S+D SLLISGGDDG IV++ IFQL+ A   EN +  ILH F+AH   VT+I S  
Sbjct: 127 SSLKISSDSSLLISGGDDGVIVVMAIFQLLDASGNENPSDSILHSFVAHDGPVTAIRSCT 186

Query: 189 GMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSDGLVYKS 248
            +S   IVSCS D  CK WSLL G  LHTV FPC I  + LD    E +AAGSDGL+YK 
Sbjct: 187 RLSLPAIVSCSSDCTCKLWSLLEGENLHTVAFPCVILGIALDTMGAEFYAAGSDGLIYKG 246

Query: 249 SLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAAVVSIVI 308
           S +  ++                   K + R         S EL  W+ +H  AVVS+V+
Sbjct: 247 SFKAESR-------------------KEASR---------SRELAIWAERHGGAVVSVVV 306

Query: 309 VNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKEKSDRTGSHG 368
           VNEGK+L+SA EDGS+++WE+++GQVIM L N +  ISD+V+A   G GK      G +G
Sbjct: 307 VNEGKNLVSAGEDGSVYIWEIERGQVIMVLGNNMEGISDVVVAKGIGEGK------GYYG 366

Query: 369 RAMEISERFRLPIKMLGLS--------INQTVDMQGTVAAAGSDTRRAIEMLESAIAVYE 428
             +  +E        LGLS        I + +DM+  +  A +D R+AI+MLESAI VYE
Sbjct: 367 NGIN-NEMNEFVGGSLGLSGKELSSRPIKEAMDMEDVLNVAANDRRKAIDMLESAIGVYE 410

Query: 429 KMLELILKEAKASYNQREE 440
           ++LELILKEAK S ++  E
Sbjct: 427 RLLELILKEAKGSTSKNGE 410

[Close]

BLAST of Lsi07G002910 vs. TAIR10
Match: AT3G49180.1 (AT3G49180.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-34
Identity = 97/321 (30.22%), Postives = 146/321 (45.48%), Query Frame = 1


Query: 10  VVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHIY 69
           V+ +SS D  I ++   TGT    F    SP  G+T  G+ F+A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLPAHKKPVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H + V+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVTSIYSGMG 189
           CL  S D SLL+SG  DG+I +  + +L     ++       H F  HT SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSDGLVYKSS 249
             ++ I+S S D  CK WSL  G +L  ++FP  I ++ LDP     +A   D  +Y  +
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGA 244

Query: 250 LRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAAVVSIVIV 309
           +   +++  GT                         +G+ SE          A+  +   
Sbjct: 245 INATSEY--GTQV-----------------------LGSVSE-------KGKAITCLAYC 293

Query: 310 NEGKHLISAAEDGSIWVWEVK 331
            +G  LIS +EDG + VW+ K
Sbjct: 305 ADGNLLISGSEDGVVCVWDPK 293

[Close]

BLAST of Lsi07G002910 vs. TAIR10
Match: AT1G58230.1 (AT1G58230.1 binding)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-08
Identity = 37/140 (26.43%), Postives = 63/140 (45.00%), Query Frame = 1


Query: 94   DGFYLFAGGLSGYIHTLSLPSGDVLNSLPAHKKPVSCLKLSADGSLLISGGDDGTIVIIP 153
            + F +  G      H +SL  G V+ S+  HK  VSC+ ++AD ++L +G  D T+++  
Sbjct: 2339 ENFLVSCGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGSYDTTVMVWD 2398

Query: 154  IFQL-VQAKPQENATKHIL-----------HQFLAHTDSVTSIYSGMGMSSSQIVSCSLD 213
            I ++    K   N    +L           H    H D +T +Y    +    ++S S D
Sbjct: 2399 ILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLYVSTDLDI--VISGSKD 2458

Query: 214  GRCKFWSLLSGTVLHTVVFP 222
            G C F +L  G  + ++  P
Sbjct: 2459 GTCVFHTLREGRYIRSLKHP 2476

[Close]

BLAST of Lsi07G002910 vs. TAIR10
Match: AT1G73720.1 (AT1G73720.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 50.4 bits (119), Expect = 3.2e-06
Identity = 44/148 (29.73%), Postives = 61/148 (41.22%), Query Frame = 1


Query: 92  TPDGFYLFAGGLSGYIHTLSLPSGDVLNSLP--------AHKKPVSCLKLSADGSLLISG 151
           +PDG +L +  + G+I      SG +   L          H  PV C+  S D  +L SG
Sbjct: 222 SPDGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLASG 281

Query: 152 GDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVTSIYSGMGMSSSQIVSCSLDGR 211
             DG I I  I            T   + +F AH+  VTS+        SQ++S S D  
Sbjct: 282 SQDGKIKIWRI-----------RTGVCIRRFDAHSQGVTSL--SFSRDGSQLLSTSFDQT 341

Query: 212 CKFWSLLSGTVL-----HTVVFPCAIFS 227
            +   L SG +L     HT     AIF+
Sbjct: 342 ARIHGLKSGKLLKEFRGHTSYVNHAIFT 356

[Close]

BLAST of Lsi07G002910 vs. NCBI nr
Match: gi|659101671|ref|XP_008451730.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo])

HSP 1 Score: 785.4 bits (2027), Expect = 5.2e-224
Identity = 393/441 (89.12%), Postives = 417/441 (94.56%), Query Frame = 1


Query: 1   MTMPSFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPV 60
           MTMPS PQEVVLASSPDGPI+AY ASTGTPLA+FNSSRSPRRGITRAGKSFIAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTPLANFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNS 120
           TASGSIHIYNWWTS+AFQ LTVPEPVAPLTATPDGFYL AGGLSGYIH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLLAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDS 180
           LPAHKKPVSCLKLSADGSLLISGGDDGTIV++PIFQLVQAKP+ENAT+HILHQFLAHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAG 240
           VTSIYSGMG+SS++IVSCSLD RCKFWSLLSGT+LHTVVFPCAIFSVVL+P+E E FAAG
Sbjct: 181 VTSIYSGMGISSTKIVSCSLDARCKFWSLLSGTILHTVVFPCAIFSVVLEPSEIEFFAAG 240

Query: 241 SDGLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHE 300
           SDGLVYK SLRHNNKH  GTDY+LIP +SND+VYKRSLRHKNKH  GTSSELIPWSPKHE
Sbjct: 241 SDGLVYKGSLRHNNKHRRGTDYDLIPQISNDLVYKRSLRHKNKHLTGTSSELIPWSPKHE 300

Query: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKEK 360
           AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENE+G ISDLVMATE+ HGKE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERAHGKEQ 360

Query: 361 SDRTGSHGRAMEISERFRLPIKMLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAVYE 420
             RT  HGR ++ISERFRLPIKMLGLSI +TVDMQG +AAAGSD RRAIEMLESAIAVYE
Sbjct: 361 CVRTDRHGREIKISERFRLPIKMLGLSIKETVDMQGELAAAGSDVRRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKASYNQREETQ 442
           KMLELILKEA+ASYNQREETQ
Sbjct: 421 KMLELILKEAEASYNQREETQ 441

[Close]

BLAST of Lsi07G002910 vs. NCBI nr
Match: gi|778697541|ref|XP_011654344.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus])

HSP 1 Score: 783.1 bits (2021), Expect = 2.6e-223
Identity = 395/442 (89.37%), Postives = 415/442 (93.89%), Query Frame = 1


Query: 1   MTMPSFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPV 60
           MTMPS PQEVVLASSPDGPI+AY ASTGT LASFNSSRSPRRGITRAGKSFIAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNS 120
           TASGSIHIYNWWTS+AFQ LTVPEPVAPLTATPDGFYLFAGGLSGYIH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDS 180
           LPAHKKPVSCLKLSADGSLLISGGDDGTIV++PIFQLVQAKP+ENAT+HILHQFLAHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAG 240
           VTSIYSGMG+SS+QIVSCSLDGRCK W+LLSGT+LHTVVFPCAIFSVVL+P+ETE FAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 SDGLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHE 300
           SDGLVYK SL HNNK   GTDYELIP +SND+VY+RSLRHKNKH  GTSSELIPWS KHE
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKEK 360
           AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENE+G ISDLVMATE+ HGKE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 SDRTGSHGRAMEISERFRLPIKMLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAVYE 420
             +T SHG AMEISERFRLPIKMLGLSI QTV+MQG V AAGSD  RAIEMLESAIAVYE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKASYNQREETQG 443
           KMLELILKEAKASYNQREETQG
Sbjct: 421 KMLELILKEAKASYNQREETQG 442

[Close]

BLAST of Lsi07G002910 vs. NCBI nr
Match: gi|645239874|ref|XP_008226336.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume])

HSP 1 Score: 454.5 bits (1168), Expect = 2.1e-124
Identity = 247/440 (56.14%), Postives = 303/440 (68.86%), Query Frame = 1


Query: 3   MPSFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M S P E+VL SSPDGPIIAY AS+G  LA F  SRSPR G+   GKS+IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRGGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+STAF +L V EPVAPLTAT DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVLEPVAPLTATSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVT 182
           AH KPVSCL +S D SLLISG DDGTIV++PIFQLV A   +N  + ILH+F AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDNVEELILHRFAAHSDSVT 180

Query: 183 SIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSD 242
           +I SG G+ +SQI+SCSLD  CKFWSLL GT+L T+VFPC I  V L+PTE E + AGSD
Sbjct: 181 AIVSGTGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTEPEFYVAGSD 240

Query: 243 GLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAA 302
           G V+K SL+      +GT                      +  +   SELI W+PKH  A
Sbjct: 241 GSVHKGSLK------VGT----------------------RQLVTQGSELISWTPKHSGA 300

Query: 303 VVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKEK-- 362
           VVS+V+VN G++LISA+EDGS+WVWEV  GQVIMAL NE+G ISDLV AT     K    
Sbjct: 301 VVSVVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAATGINCSKANGF 360

Query: 363 SDRTGSHGRAMEISERFRLPIK-MLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAVY 422
             R G++G     +  FR   K ++ + I + ++M+  +  A +D  RAI+MLESAIA+Y
Sbjct: 361 GMRNGAYGSG---NCHFRSSGKELMNMPIKKILEMEDALKVAANDRNRAIDMLESAIAMY 409

Query: 423 EKMLELILKEAKASYNQREE 440
           E++LELILKEAK      E+
Sbjct: 421 ERLLELILKEAKRGSRNNEQ 409

[Close]

BLAST of Lsi07G002910 vs. NCBI nr
Match: gi|595881845|ref|XP_007212495.1| (hypothetical protein PRUPE_ppa017540mg [Prunus persica])

HSP 1 Score: 442.2 bits (1136), Expect = 1.1e-120
Identity = 240/429 (55.94%), Postives = 290/429 (67.60%), Query Frame = 1


Query: 3   MPSFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M S P E+VL SSPDGPIIAY AS+G  LA F  SRSPRRG+   GKS+IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRRGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+STAF +L VPEPVAPLT T DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVPEPVAPLTVTSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVT 182
           AH KPVSCL +S D SLLISG DDGTIV++PIFQLV A   ++  + ILH+F AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDSVEELILHRFAAHSDSVT 180

Query: 183 SIYSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSD 242
           +I SGMG+ +SQI+SCSLD  CKFWSLL GT+L T+VFPC I  V L+PT+ E + AGSD
Sbjct: 181 AIVSGMGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTQPEFYVAGSD 240

Query: 243 GLVYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAA 302
           G V+K SL+                     V  R L       +   SELI W+PKH  A
Sbjct: 241 GSVHKGSLK---------------------VGSRQL-------VTQGSELIAWTPKHGGA 300

Query: 303 VVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIGRISDLVMATEKGHGKEKSD 362
           VVS+V+VN G++LISA+EDGS+WVWEV  GQVIMAL NE+G ISDLV AT          
Sbjct: 301 VVSMVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAAT---------- 360

Query: 363 RTGSHGRAMEISERFRLPIKMLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAVYEKM 422
                                 G++ ++  D+   +  A +D  RAI+MLESAIA+YE++
Sbjct: 361 ----------------------GINCSKANDV---LKVAANDRNRAIDMLESAIAMYERL 366

Query: 423 LELILKEAK 432
           LELILKEAK
Sbjct: 421 LELILKEAK 366

[Close]

BLAST of Lsi07G002910 vs. NCBI nr
Match: gi|1009162129|ref|XP_015899270.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba])

HSP 1 Score: 433.0 bits (1112), Expect = 6.5e-118
Identity = 228/433 (52.66%), Postives = 296/433 (68.36%), Query Frame = 1


Query: 5   SFPQEVVLASSPDGPIIAYGASTGTPLASFNSSRSPRRGITRAGKSFIAVSHICPVTASG 64
           SFP E++L SSPDGPIIA+ AS+G  L  F+ SRSPRRG+  AG +FIA SHI P TA G
Sbjct: 4   SFPYEIILTSSPDGPIIAHDASSGATLTHFSDSRSPRRGLAVAGNTFIAASHISPTTACG 63

Query: 65  SIHIYNWWTSTAFQSLTVPEPVAPLTATPDGFYLFAGGLSGYIHTLSLPSGDVLNSLPAH 124
           SIH+YNWW+STAF +L VPEPVAP+TAT DG  +FAGGLSG ++ LSLPSGD+L SLP+H
Sbjct: 64  SIHLYNWWSSTAFHNLPVPEPVAPITATSDGALIFAGGLSGCVYALSLPSGDILKSLPSH 123

Query: 125 KKPVSCLKLSADGSLLISGGDDGTIVIIPIFQLVQAKPQENATKHILHQFLAHTDSVTSI 184
            KPVSCL +S DGSLL+SG DDGTI ++PIFQL+ +   EN+   ++ +F AH+DSVT+I
Sbjct: 124 SKPVSCLGISDDGSLLVSGSDDGTIAVVPIFQLMGSSENENSDYAVMQKFTAHSDSVTAI 183

Query: 185 YSGMGMSSSQIVSCSLDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPTETELFAAGSDGL 244
             G G+ +SQI+S SLD  CKFWSLL GT L TV F C I  +VLDPTE+E +AAGSDG 
Sbjct: 184 VFGSGLCTSQIISSSLDFTCKFWSLLRGTQLKTVSFRCGILGIVLDPTESEFYAAGSDGS 243

Query: 245 VYKSSLRHNNKHHMGTDYELIPPVSNDMVYKRSLRHKNKHHMGTSSELIPWSPKHEAAVV 304
           VYK+S+   ++       EL  P                       EL+ W  KHE  VV
Sbjct: 244 VYKASINAGSR-------ELANP---------------------GHELVEWKEKHEGPVV 303

Query: 305 SIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEIG-RISDLVMATEKGHGKEKSDR 364
           S+ +V EG++LI+A+EDGS+WVW+V++G+V++ L N +G  ISD+V+A    +GK     
Sbjct: 304 SLAMVKEGRNLITASEDGSVWVWDVERGKVVIELGNTMGSMISDMVVAKGISYGKGHGSG 363

Query: 365 TGSHGRAMEI-SERFRLPI----KMLGLSINQTVDMQGTVAAAGSDTRRAIEMLESAIAV 424
            GS G      SE +R+       M+GL + +T++M+  +  A  D  RAI+MLESAI +
Sbjct: 364 AGSGGGGSNNGSEEWRIGFCGEELMMGLGMKETMEMEDVLRVAEKDRSRAIDMLESAIGM 408

Query: 425 YEKMLELILKEAK 432
           YEK+LELILKEAK
Sbjct: 424 YEKLLELILKEAK 408

The following BLAST results are available for this feature:

BLAST of Lsi07G002910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RID3_ARATH	2.2e-33	30.22	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1	[more]
WDR18_RAT	2.7e-23	25.60	WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1	[more]
WDR18_DANRE	2.3e-22	26.02	WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1	[more]
WDR18_HUMAN	5.1e-22	23.88	WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2	[more]
WDR18_MOUSE	6.7e-22	25.30	WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=1 SV=1	[more]

BLAST of Lsi07G002910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0D5_CUCSA	1.8e-223	89.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1	[more]
M5WIZ4_PRUPE	7.5e-121	55.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1	[more]
W9R444_9ROSA	1.1e-111	51.94	WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1	[more]
B9T1J9_RICCO	1.7e-109	49.77	WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1	[more]
A0A067KXT8_JATCU	5.5e-108	50.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03563 PE=4 SV=1	[more]

BLAST of Lsi07G002910 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	1.2e-34	30.22	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G58230.1	2.0e-08	26.43	binding	[more]
AT1G73720.1	3.2e-06	29.73	transducin family protein / WD-40 repeat family protein	[more]

BLAST of Lsi07G002910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101671\|ref\|XP_008451730.1\|	5.2e-224	89.12	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo]	[more]
gi\|778697541\|ref\|XP_011654344.1\|	2.6e-223	89.37	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus]	[more]
gi\|645239874\|ref\|XP_008226336.1\|	2.1e-124	56.14	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume]	[more]
gi\|595881845\|ref\|XP_007212495.1\|	1.1e-120	55.94	hypothetical protein PRUPE_ppa017540mg [Prunus persica]	[more]
gi\|1009162129\|ref\|XP_015899270.1\|	6.5e-118	52.66	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR011047	Quinoprotein_ADH-like_supfam
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G002910.1	Lsi07G002910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 117..151 score: 3.5E-6coord: 171..208 score:
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 289..328 score: 0.013coord: 211..249 score: 38.0coord: 114..153 score: 7.3E-7coord: 167..208 score: 0.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 121..151 score: 10.308coord: 296..337 score: 12
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	unknown	SSF50998	Quinoprotein alcohol dehydrogenase-like	coord: 10..251 score: 3.3E-44coord: 288..338 score: 3.3
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 290..350 score: 1.0E-38coord: 12..252 score: 1.0
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 79..217 score: 12.631coord: 296..337 score: 11
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 315..329 scor
None	No IPR available	unknown	Coil	Coil	coord: 409..429 scor
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 277..439 score: 1.9E-151coord: 8..252 score: 1.9E
None	No IPR available	PANTHER	PTHR18763:SF3	SUBFAMILY NOT NAMED	coord: 277..439 score: 1.9E-151coord: 8..252 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G002910	Csa4G083560	Cucumber (Chinese Long) v2	culsiB305
Lsi07G002910	CSPI04G08000	Wild cucumber (PI 183967)	cpilsiB305
Lsi07G002910	Cucsa.273600	Cucumber (Gy14) v1	cgylsiB444
Lsi07G002910	CmaCh16G004250	Cucurbita maxima (Rimu)	cmalsiB329
Lsi07G002910	CmoCh16G004570	Cucurbita moschata (Rifu)	cmolsiB318
Lsi07G002910	Cla002443	Watermelon (97103) v1	lsiwmB445
Lsi07G002910	MELO3C016114	Melon (DHL92) v3.5.1	lsimeB456
Lsi07G002910	ClCG07G010110	Watermelon (Charleston Gray)	lsiwcgB414
Lsi07G002910	MELO3C016114.2	Melon (DHL92) v3.6.1	lsimedB474
Lsi07G002910	Cla97C07G136790	Watermelon (97103) v2	lsiwmbB413
Lsi07G002910	Bhi01G002500	Wax gourd	lsiwgoB551
Lsi07G002910	Cp4.1LG14g03560	Cucurbita pepo (Zucchini)	cpelsiB188
Lsi07G002910	CsGy4G007870	Cucumber (Gy14) v2	cgyblsiB279
Lsi07G002910	Carg11356	Silver-seed gourd	carlsiB597
Lsi07G002910	CsaV3_4G008220	Cucumber (Chinese Long) v3	cuclsiB324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G002910	Cucurbita pepo (Zucchini)	cpelsiB376
Lsi07G002910	Cucurbita pepo (Zucchini)	cpelsiB381
Lsi07G002910	Cucurbita pepo (Zucchini)	cpelsiB473
Lsi07G002910	Wild cucumber (PI 183967)	cpilsiB307
Lsi07G002910	Cucumber (Chinese Long) v2	culsiB307
Lsi07G002910	Melon (DHL92) v3.5.1	lsimeB451
Lsi07G002910	Watermelon (Charleston Gray)	lsiwcgB391
Lsi07G002910	Watermelon (97103) v1	lsiwmB458
Lsi07G002910	Cucumber (Gy14) v2	cgyblsiB281
Lsi07G002910	Melon (DHL92) v3.6.1	lsimedB469
Lsi07G002910	Silver-seed gourd	carlsiB042
Lsi07G002910	Silver-seed gourd	carlsiB287
Lsi07G002910	Cucumber (Chinese Long) v3	cuclsiB326
Lsi07G002910	Watermelon (97103) v2	lsiwmbB396
Lsi07G002910	Wax gourd	lsiwgoB580
Lsi07G002910	Bottle gourd (USVL1VR-Ls)	lsilsiB142
Lsi07G002910	Cucurbita maxima (Rimu)	cmalsiB451
Lsi07G002910	Cucurbita maxima (Rimu)	cmalsiB697
Lsi07G002910	Cucurbita maxima (Rimu)	cmalsiB702
Lsi07G002910	Cucurbita moschata (Rifu)	cmolsiB438
Lsi07G002910	Cucurbita moschata (Rifu)	cmolsiB691
Lsi07G002910	Cucurbita moschata (Rifu)	cmolsiB696