Cp4.1LG14g03560 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g03560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	WD-repeat protein, putative
Location	Cp4.1LG14 : 2182829 .. 2184154 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTGGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAATGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCCGGGAGGAGTTCCATCGCCGTCTCCCATATCTGCCCAATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATATCAGGTGGGGATGATGGCACGATTGTTGTCATCCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCGACCAAACACATTCTACATCAGTTTTCAGCACATAATGATTCAGTGACTTCCATTTACTCTGTCATGGGGATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGTCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGAACTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATACGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCGCCTAAGCACAACGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGAAGAGCAATGAAAAGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCAGGCTACAATCAAAGAGAAGAAATACAAAGATGA

mRNA sequence

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTGGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAATGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCCGGGAGGAGTTCCATCGCCGTCTCCCATATCTGCCCAATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATATCAGGTGGGGATGATGGCACGATTGTTGTCATCCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCGACCAAACACATTCTACATCAGTTTTCAGCACATAATGATTCAGTGACTTCCATTTACTCTGTCATGGGGATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGTCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGAACTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATACGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCGCCTAAGCACAACGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGAAGAGCAATGAAAAGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCAGGCTACAATCAAAGAGAAGAAATACAAAGATGA

Coding sequence (CDS)

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTGGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAATGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCCGGGAGGAGTTCCATCGCCGTCTCCCATATCTGCCCAATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATATCAGGTGGGGATGATGGCACGATTGTTGTCATCCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCGACCAAACACATTCTACATCAGTTTTCAGCACATAATGATTCAGTGACTTCCATTTACTCTGTCATGGGGATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGTCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGAACTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATACGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCGCCTAAGCACAACGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGAAGAGCAATGAAAAGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCAGGCTACAATCAAAGAGAAGAAATACAAAGATGA

Protein sequence

MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNVRRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKMLELILKEAKAGYNQREEIQR

Homology

[Close]

BLAST of Cp4.1LG14g03560 vs. Swiss-Prot
Match: RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-34
Identity = 86/241 (35.68%), Postives = 123/241 (51.04%), Query Frame = 1


Query: 10  VVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G   +A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H +SV+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVTSIYSVMG 189
           CL  S D SLL+SG  DG+I V  + +L     ++       H F+ H  SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTDGLVYKGS 249
             ++ I+SSS D  CK WSL  G +L  ++FP VI ++ LDP    F+A   D  +Y G+
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGA 244

Query: 250 L 251
           +
Sbjct: 245 I 245

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BLAST of Cp4.1LG14g03560 vs. Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-22
Identity = 83/339 (24.48%), Postives = 152/339 (44.84%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 65
           +P EV + +    P+   + ++  +G  L ++   ++  RG+       +  + +     
Sbjct: 3   APMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LTA+P+G Y+ AG ++  IH   + +G++L 
Sbjct: 63  -GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHND 185
            L  H + VSCL+ + D S  ISGG D  ++V  +  ++QA P         H +S H  
Sbjct: 123 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHAL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAA 245
            +T ++   G   +++ +SS+D   K W + SG +L +V+F   I +V +D +E   F  
Sbjct: 183 PITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCG 242

Query: 246 GTDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           G++G +++  L              T P           R ++ H    + ++      H
Sbjct: 243 GSEGSIFQVDL-------------FTWPGQ---------RERSFHPEQDAGKVFK---GH 302

Query: 306 NAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D  + +W V   Q I T+
Sbjct: 303 RNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTV 307

[Close]

BLAST of Cp4.1LG14g03560 vs. Swiss-Prot
Match: WDR18_DANRE (WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.7e-22
Identity = 89/351 (25.36%), Postives = 149/351 (42.45%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 65
           +P EVVL++   G +     YD  TG+   S+    +  R +T      I  + +     
Sbjct: 3   APVEVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P  V  L A+PDG Y+ AG ++  I+   + +G++L 
Sbjct: 63  -GKNYINVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAG-IAEAIYLWEVSTGNLLA 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHND 185
            L  H + +SC++ + D S  +SGG D    +  +  +VQ     + T    H  S H+ 
Sbjct: 123 ILSRHFQDLSCIKFTDDSSHFVSGGKDNLAFIWNLSSVVQL--DSSRTPEPRHILSRHSL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAA 245
            +T I+  +    +++ ++S+D   K W + SG +L +V+F   I SV  DP E   F  
Sbjct: 183 PITDIHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCG 242

Query: 246 GTDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           G+DG +++ SL                         CS          + SE       H
Sbjct: 243 GSDGNIFQVSL-------------------------CSTSLSRDKTFQSDSEGNQVFKGH 302

Query: 306 NAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVI 351
              V  + +  +G  L+S + D  + +W V   Q I T+ N  G +++  I
Sbjct: 303 RNLVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTI-NHRGPVTNAAI 318

[Close]

BLAST of Cp4.1LG14g03560 vs. Swiss-Prot
Match: WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.6e-21
Identity = 81/339 (23.89%), Postives = 149/339 (43.95%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 65
           +P EV + +     +   V ++  +G  L ++   ++  RG+       +  + +     
Sbjct: 3   APMEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LT +P+G Y+ AG +S  I+   + +G++L 
Sbjct: 63  -GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHND 185
            L  H + VSCL+ + D S  ISGG D  ++   +  ++QA P         H +S H  
Sbjct: 123 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAA 245
            +T ++   G   +++ ++S+D   K W + SG +L +V+F   I +V +D +E   F  
Sbjct: 183 PITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCG 242

Query: 246 GTDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           G+DG +++  L              T P   + +++    H  K   G           H
Sbjct: 243 GSDGSIFQVDL-------------CTWPGQREKSFQPEQEH-GKVFRG-----------H 302

Query: 306 NAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D  + +W V   Q + T+
Sbjct: 303 RNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTV 307

[Close]

BLAST of Cp4.1LG14g03560 vs. Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-20
Identity = 79/339 (23.30%), Postives = 150/339 (44.25%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 65
           +P EVV+ +    P+   + ++  +G  L ++   ++  RG+       +  +       
Sbjct: 3   APMEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------ 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LT  P+G Y+ AG ++  I+   + +G++L 
Sbjct: 63  QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHND 185
            L  H + VSCL+ + DGS  +S G D  ++   +  ++QA P         H +S H  
Sbjct: 123 ILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAA 245
            +T ++   G   +++ ++S+D   K W++ SG +L +V+F   I SV +D +E   F  
Sbjct: 183 PITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCG 242

Query: 246 GTDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           G+DG +++                       DL  R   R ++      + ++      H
Sbjct: 243 GSDGSIFQ----------------------VDLCSRPGPREQSFQPEQNTGKVFK---GH 302

Query: 306 NAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D ++ +W V   Q + T+
Sbjct: 303 RNQVTCLSVSTDGSILLSGSHDESVRLWDVKSKQCVRTV 307

[Close]

BLAST of Cp4.1LG14g03560 vs. TrEMBL
Match: A0A0A0L0D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1)

HSP 1 Score: 693.0 bits (1787), Expect = 2.4e-196
Identity = 359/441 (81.41%), Postives = 387/441 (87.76%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGT LASFN SRSPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYLFAGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDS 180
           LPAH+K VSCL+LSADGSLLISGGDDGTIVV+PIFQLVQAKP+ENAT+HILHQF AH DS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS+QIVS S+DGRCK W+LLSGT+LHTVVFPC IFSVVL+PSETEFFAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 TDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHN 300
           +DGLVYKGSL HN K    TD EL P  S+DL YR SLRHKNKHL GTSSELI WS KH 
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 NVRRGSHGRAMK-SESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            V+  SHG AM+ SE  RLP  MLGL I QT EMQG V A GSDV RAIE+LESAIA+YE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEAKA YNQREE Q
Sbjct: 421 KMLELILKEAKASYNQREETQ 441

[Close]

BLAST of Cp4.1LG14g03560 vs. TrEMBL
Match: M5WIZ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.6e-110
Identity = 208/360 (57.78%), Postives = 257/360 (71.39%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           M  SP E+VL SSPDGPI+AYDAS+G  LA F  SRSPRRG+   G+S IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRRGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+S+AF ++ VPEPVAPLT T DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVPEPVAPLTVTSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH K VSCL +S D SLLISG DDGTIVV+PIFQLV A   ++  + ILH+F+AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDSVEELILHRFAAHSDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTD 242
           +I S MG+ +SQI+S S+D  CKFWSLL GT+L T+VFPC I  V L+P++ EF+ AG+D
Sbjct: 181 AIVSGMGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTQPEFYVAGSD 240

Query: 243 GLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAA 302
           G V+KGSL+   + L+                               SELI+W+PKH  A
Sbjct: 241 GSVHKGSLKVGSRQLVTQ----------------------------GSELIAWTPKHGGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+V++N G NLISA+EDG++WVW+V+ GQVIM L NEMGSISDLV AT     K  +V
Sbjct: 301 VVSMVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAATGINCSKANDV 332

[Close]

BLAST of Cp4.1LG14g03560 vs. TrEMBL
Match: B9T1J9_RICCO (WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 7.2e-108
Identity = 216/444 (48.65%), Postives = 281/444 (63.29%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           M FS  E+VL SSPDGPI AYD  +GT LA F  SRSPR G+   G++ IA SHI   TA
Sbjct: 1   MSFSSHEIVLTSSPDGPITAYDTISGTTLARFTGSRSPRHGLAIVGKAYIAASHISSATA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+Y WW+SSA   + +PEPVAPL ATPDG YLFAGGL G ++ LS+PSG++L S P
Sbjct: 61  SGSIHLYTWWSSSALHHLPLPEPVAPLAATPDGSYLFAGGLFGNVYALSIPSGNILKSFP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH K VSC+ +S+D SLLISGGDDG IVV+PIFQLV+A   EN +  ILH F AH+  VT
Sbjct: 121 AHSKPVSCINISSDSSLLISGGDDGNIVVVPIFQLVEAPGSENESNLILHSFPAHDGPVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTD 242
            I   MG+    IVS S D  CK WSLL G  L TV FPC I  + LDP+E EF+AAG++
Sbjct: 181 GITVCMGICHPTIVSCSTDSTCKLWSLLDGRNLQTVAFPCSISGIALDPTEVEFYAAGSN 240

Query: 243 GLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAA 302
           GL+YKGSL+                              ++  +    +LI+W+ KH+ A
Sbjct: 241 GLIYKGSLQAG----------------------------SRKGIAQGRKLITWTQKHDGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+V+INEG NL+SAAEDG++++W +  GQ+IM + N M +ISD+V+A      +E   
Sbjct: 301 VVSVVVINEGKNLVSAAEDGSVFIWGIENGQLIMVIGNNMDNISDVVVARGICDGRE--- 360

Query: 363 RRGSHGRAMKSESSRLPSPMLGLL--------INQTAEMQGAVAAGGSDVRRAIELLESA 422
               +G  + +E +      LGL         I  T  ++ A+A    + R+AI+ LESA
Sbjct: 361 ---GYGNRVGNEMNEFGGRNLGLSSKELNFRPIKDTVNVENALAVAAKNSRKAIDKLESA 410

Query: 423 IAMYEKMLELILKEAKAGYNQREE 439
           I +YE++LELILKEAKAG ++  E
Sbjct: 421 IGVYERLLELILKEAKAGTSKNGE 410

[Close]

BLAST of Cp4.1LG14g03560 vs. TrEMBL
Match: W9R444_9ROSA (WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 9.4e-108
Identity = 224/440 (50.91%), Postives = 290/440 (65.91%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           M  SP EV+L SSP+GPI+AYDAS+G  +  F  SRSPRRG+   G+  IA SHI P+TA
Sbjct: 1   MSSSPHEVILTSSPEGPIIAYDASSGASVTCFTGSRSPRRGLALVGKIFIAASHISPVTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIHIYNWW+S+AF  + VPEPVAPL  TPDG YLFAGGLSG ++ LS+PSGDVL S+ 
Sbjct: 61  SGSIHIYNWWSSTAFHKLPVPEPVAPLIGTPDGSYLFAGGLSGSVYALSVPSGDVLRSVH 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH+KSVSCL +S DGSLLISG DDGTIVVIPIFQLV +   ++  + I+H+ +AH+ +VT
Sbjct: 121 AHKKSVSCLRISEDGSLLISGSDDGTIVVIPIFQLVGSSINQDMDQLIMHKLAAHSGAVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTD 242
            I S   + +SQI+S S+D  CKFWSLL GT L TVVFP  I  +VL+PSE+EF+AAG+D
Sbjct: 181 DIISGKELCNSQIISCSLDCTCKFWSLLRGTHLRTVVFPSTILGLVLNPSESEFYAAGSD 240

Query: 243 GLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAA 302
           G VYKGS++   + +         P+S                 G   EL+  +  HN A
Sbjct: 241 GSVYKGSIKVGSRRI---------PSS----------------KGQDHELVI-AQNHNGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMG-SISDLVIATEKRHEKE-- 362
           +VS+ ++N G NL+SA+EDG +++ +++ GQV++ L NE G SISDLV+AT     K+  
Sbjct: 301 IVSLAMVNSGRNLVSASEDGGVYIQKIDDGQVVLALGNEFGSSISDLVVATGIGCGKDIV 360

Query: 363 ---------RNVRRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIEL 422
                      VR G  GR +   SS          + +  EM+  +A    D  RAI+L
Sbjct: 361 GSRLGSGEFDGVRIGLSGRQVMMSSSP---------VKERVEMEDVLALAEKDRSRAIDL 405

Query: 423 LESAIAMYEKMLELILKEAK 431
           LESAIAMYE++LELILKEAK
Sbjct: 421 LESAIAMYERLLELILKEAK 405

[Close]

BLAST of Cp4.1LG14g03560 vs. TrEMBL
Match: A0A067KXT8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03563 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 7.5e-105
Identity = 213/444 (47.97%), Postives = 278/444 (62.61%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           M FS  E+VL SSP GPI  YD  +GT LA F+ SRSPR G+  AG++ IA SHI   TA
Sbjct: 1   MSFSSHEIVLTSSPHGPITVYDTVSGTTLARFSGSRSPRHGLVLAGKAYIAASHISSATA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+YNWW+ +A   + VPEPVAPL +TPDG +LFAGGLSG I  LS+PSG+++ S+P
Sbjct: 61  SGSIHLYNWWSPTALHHLPVPEPVAPLASTPDGLFLFAGGLSGDIFALSIPSGNIIKSVP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH K VS L++S+D SLLISGGDDG IVV+ IFQL+ A   EN +  ILH F AH+  VT
Sbjct: 121 AHHKPVSSLKISSDSSLLISGGDDGVIVVMAIFQLLDASGNENPSDSILHSFVAHDGPVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTD 242
           +I S   +S   IVS S D  CK WSLL G  LHTV FPCVI  + LD    EF+AAG+D
Sbjct: 181 AIRSCTRLSLPAIVSCSSDCTCKLWSLLEGENLHTVAFPCVILGIALDTMGAEFYAAGSD 240

Query: 243 GLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAA 302
           GL+YKGS +          +E    AS                   S EL  W+ +H  A
Sbjct: 241 GLIYKGSFK----------AESRKEAS------------------RSRELAIWAERHGGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+V++NEG NL+SA EDG++++W++ +GQVIM L N M  ISD+V+A      K    
Sbjct: 301 VVSVVVVNEGKNLVSAGEDGSVYIWEIERGQVIMVLGNNMEGISDVVVA------KGIGE 360

Query: 363 RRGSHGRAMKSESSRLPSPMLGLL--------INQTAEMQGAVAAGGSDVRRAIELLESA 422
            +G +G  + +E +      LGL         I +  +M+  +    +D R+AI++LESA
Sbjct: 361 GKGYYGNGINNEMNEFVGGSLGLSGKELSSRPIKEAMDMEDVLNVAANDRRKAIDMLESA 410

Query: 423 IAMYEKMLELILKEAKAGYNQREE 439
           I +YE++LELILKEAK   ++  E
Sbjct: 421 IGVYERLLELILKEAKGSTSKNGE 410

[Close]

BLAST of Cp4.1LG14g03560 vs. TAIR10
Match: AT3G49180.1 (AT3G49180.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 148.7 bits (374), Expect = 8.6e-36
Identity = 86/241 (35.68%), Postives = 123/241 (51.04%), Query Frame = 1


Query: 10  VVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G   +A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H +SV+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVTSIYSVMG 189
           CL  S D SLL+SG  DG+I V  + +L     ++       H F+ H  SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTDGLVYKGS 249
             ++ I+SSS D  CK WSL  G +L  ++FP VI ++ LDP    F+A   D  +Y G+
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGA 244

Query: 250 L 251
           +
Sbjct: 245 I 245

[Close]

BLAST of Cp4.1LG14g03560 vs. TAIR10
Match: AT1G58230.1 (AT1G58230.1 binding)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-08
Identity = 37/140 (26.43%), Postives = 64/140 (45.71%), Query Frame = 1


Query: 94   DGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVSCLELSADGSLLISGGDDGTIVVIP 153
            + F +  G      H +SL  G V+ S+  H+  VSC+ ++AD ++L +G  D T++V  
Sbjct: 2339 ENFLVSCGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGSYDTTVMVWD 2398

Query: 154  IFQL-VQAKPQENATKHIL-----------HQFSAHNDSVTSIYSVMGMSSSQIVSSSMD 213
            I ++    K   N    +L           H    H+D +T +Y  +      ++S S D
Sbjct: 2399 ILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLY--VSTDLDIVISGSKD 2458

Query: 214  GRCKFWSLLSGTVLHTVVFP 222
            G C F +L  G  + ++  P
Sbjct: 2459 GTCVFHTLREGRYIRSLKHP 2476

[Close]

BLAST of Cp4.1LG14g03560 vs. NCBI nr
Match: gi|659101671|ref|XP_008451730.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo])

HSP 1 Score: 695.7 bits (1794), Expect = 5.4e-197
Identity = 356/441 (80.73%), Postives = 390/441 (88.44%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGTPLA+FN SRSPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTPLANFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYL AGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLLAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDS 180
           LPAH+K VSCL+LSADGSLLISGGDDGTIVV+PIFQLVQAKP+ENAT+HILHQF AH DS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS++IVS S+D RCKFWSLLSGT+LHTVVFPC IFSVVL+PSE EFFAAG
Sbjct: 181 VTSIYSGMGISSTKIVSCSLDARCKFWSLLSGTILHTVVFPCAIFSVVLEPSEIEFFAAG 240

Query: 241 TDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHN 300
           +DGLVYKGSLRHN KH   TD +L P  S+DL Y+ SLRHKNKHL GTSSELI WSPKH 
Sbjct: 241 SDGLVYKGSLRHNNKHRRGTDYDLIPQISNDLVYKRSLRHKNKHLTGTSSELIPWSPKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERAHGKEQ 360

Query: 361 NVRRGSHGRAMK-SESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            VR   HGR +K SE  RLP  MLGL I +T +MQG +AA GSDVRRAIE+LESAIA+YE
Sbjct: 361 CVRTDRHGREIKISERFRLPIKMLGLSIKETVDMQGELAAAGSDVRRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEA+A YNQREE Q
Sbjct: 421 KMLELILKEAEASYNQREETQ 441

[Close]

BLAST of Cp4.1LG14g03560 vs. NCBI nr
Match: gi|778697541|ref|XP_011654344.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus])

HSP 1 Score: 693.0 bits (1787), Expect = 3.5e-196
Identity = 359/441 (81.41%), Postives = 387/441 (87.76%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGT LASFN SRSPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYLFAGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDS 180
           LPAH+K VSCL+LSADGSLLISGGDDGTIVV+PIFQLVQAKP+ENAT+HILHQF AH DS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS+QIVS S+DGRCK W+LLSGT+LHTVVFPC IFSVVL+PSETEFFAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 TDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHN 300
           +DGLVYKGSL HN K    TD EL P  S+DL YR SLRHKNKHL GTSSELI WS KH 
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 NVRRGSHGRAMK-SESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            V+  SHG AM+ SE  RLP  MLGL I QT EMQG V A GSDV RAIE+LESAIA+YE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEAKA YNQREE Q
Sbjct: 421 KMLELILKEAKASYNQREETQ 441

[Close]

BLAST of Cp4.1LG14g03560 vs. NCBI nr
Match: gi|645239874|ref|XP_008226336.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume])

HSP 1 Score: 447.2 bits (1149), Expect = 3.3e-122
Identity = 241/441 (54.65%), Postives = 302/441 (68.48%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           M  SP E+VL SSPDGPI+AYDAS+G  LA F  SRSPR G+   G+S IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRGGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+S+AF ++ V EPVAPLTAT DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVLEPVAPLTATSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH K VSCL +S D SLLISG DDGTIVV+PIFQLV A   +N  + ILH+F+AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDNVEELILHRFAAHSDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTD 242
           +I S  G+ +SQI+S S+D  CKFWSLL GT+L T+VFPC I  V L+P+E EF+ AG+D
Sbjct: 181 AIVSGTGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTEPEFYVAGSD 240

Query: 243 GLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAA 302
           G V+KGSL+   + L+                               SELISW+PKH+ A
Sbjct: 241 GSVHKGSLKVGTRQLVT----------------------------QGSELISWTPKHSGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER-- 362
           VVS+V++N G NLISA+EDG++WVW+V+ GQVIM L NEMGSISDLV AT     K    
Sbjct: 301 VVSVVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAATGINCSKANGF 360

Query: 363 NVRRGSHGRA---MKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAM 422
            +R G++G      +S    L    + + I +  EM+ A+    +D  RAI++LESAIAM
Sbjct: 361 GMRNGAYGSGNCHFRSSGKEL----MNMPIKKILEMEDALKVAANDRNRAIDMLESAIAM 409

Query: 423 YEKMLELILKEAKAGYNQREE 439
           YE++LELILKEAK G    E+
Sbjct: 421 YERLLELILKEAKRGSRNNEQ 409

[Close]

BLAST of Cp4.1LG14g03560 vs. NCBI nr
Match: gi|657978316|ref|XP_008381094.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Malus domestica])

HSP 1 Score: 416.0 bits (1068), Expect = 8.2e-113
Identity = 226/439 (51.48%), Postives = 285/439 (64.92%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           M  S  E+VL SSPDGPI+AYDAS+GT LA F  SRSPRRG+T  G+  IA SH+ P T 
Sbjct: 1   MSSSSHEIVLXSSPDGPIIAYDASSGTALAQFTGSRSPRRGLTIVGKPYIAASHVSPTTG 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+YNW +SSA  +  VPEPVAPL A  DG YLFAGGLSG +HTLS+PSGDVL SL 
Sbjct: 61  SGSIHLYNWCSSSALHNXQVPEPVAPLAAMSDGAYLFAGGLSGSVHTLSIPSGDVLKSLA 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKP---QENATKHILHQFSAHND 182
            H K VSCL +S D SLLISG DDG+IVV+PIFQLV A      +N    +LH+FSAH+D
Sbjct: 121 VHNKXVSCLGISDDESLLISGSDDGSIVVVPIFQLVAASGYVLYDNVEDLVLHRFSAHSD 180

Query: 183 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAA 242
           SVT++ S +G+ +SQ++S S+DG CKFWSLL   +L TVVFPC I  + L+P E EF+AA
Sbjct: 181 SVTAVVSGVGLYTSQVISCSLDGTCKFWSLLXAALLLTVVFPCAIXXIALNPREPEFYAA 240

Query: 243 GTDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 302
           G+DG V KG  R   + L+                                +LI+WSPKH
Sbjct: 241 GSDGSVXKGLWRTGKRQLVM----------------------------QGKDLITWSPKH 300

Query: 303 NAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKE 362
           +  VVS+V++NEG NL+SA+EDG++WVWQV+ GQV+M L NEMGSISDLV AT   + K 
Sbjct: 301 DGGVVSVVMVNEGRNLLSASEDGSVWVWQVDAGQVVMVLANEMGSISDLVAATGTNYSKG 360

Query: 363 RNVRRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 422
            +    + G    S    L    L  +  +  +M   +     D  RAI++LESAI MYE
Sbjct: 361 XDFSASNRGYRNGSCEFGLTGKELTSMPIKMLKMDEMLKVAARDRSRAIDMLESAIGMYE 411

Query: 423 KMLELILKEAKAGYNQREE 439
           ++LELILKEAK   +  ++
Sbjct: 421 RLLELILKEAKKSSSNNKQ 411

[Close]

BLAST of Cp4.1LG14g03560 vs. NCBI nr
Match: gi|1009162129|ref|XP_015899270.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba])

HSP 1 Score: 414.5 bits (1064), Expect = 2.4e-112
Identity = 223/437 (51.03%), Postives = 290/437 (66.36%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           MS  F P E++L SSPDGPI+A+DAS+G  L  F+DSRSPRRG+  AG + IA SHI P 
Sbjct: 1   MSSSF-PYEIILTSSPDGPIIAHDASSGATLTHFSDSRSPRRGLAVAGNTFIAASHISPT 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TA GSIH+YNWW+S+AF ++ VPEPVAP+TAT DG  +FAGGLSGC++ LSLPSGD+L S
Sbjct: 61  TACGSIHLYNWWSSTAFHNLPVPEPVAPITATSDGALIFAGGLSGCVYALSLPSGDILKS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDS 180
           LP+H K VSCL +S DGSLL+SG DDGTI V+PIFQL+ +   EN+   ++ +F+AH+DS
Sbjct: 121 LPSHSKPVSCLGISDDGSLLVSGSDDGTIAVVPIFQLMGSSENENSDYAVMQKFTAHSDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAG 240
           VT+I    G+ +SQI+SSS+D  CKFWSLL GT L TV F C I  +VLDP+E+EF+AAG
Sbjct: 181 VTAIVFGSGLCTSQIISSSLDFTCKFWSLLRGTQLKTVSFRCGILGIVLDPTESEFYAAG 240

Query: 241 TDGLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHN 300
           +DG VYK S+                               ++ L     EL+ W  KH 
Sbjct: 241 SDGSVYKASINAG----------------------------SRELANPGHELVEWKEKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS-ISDLVIATEKRHEKE 360
             VVS+ ++ EG NLI+A+EDG++WVW V +G+V++ L N MGS ISD+V+A    + K 
Sbjct: 301 GPVVSLAMVKEGRNLITASEDGSVWVWDVERGKVVIELGNTMGSMISDMVVAKGISYGKG 360

Query: 361 RNVRRGSHGRAMK--SESSRL----PSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLES 420
                GS G      SE  R+       M+GL + +T EM+  +     D  RAI++LES
Sbjct: 361 HGSGAGSGGGGSNNGSEEWRIGFCGEELMMGLGMKETMEMEDVLRVAEKDRSRAIDMLES 408

Query: 421 AIAMYEKMLELILKEAK 431
           AI MYEK+LELILKEAK
Sbjct: 421 AIGMYEKLLELILKEAK 408

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g03560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RID3_ARATH	1.5e-34	35.68	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1	[more]
WDR18_HUMAN	6.7e-22	24.48	WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2	[more]
WDR18_DANRE	8.7e-22	25.36	WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1	[more]
WDR18_BOVIN	9.6e-21	23.89	WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1	[more]
WDR18_RAT	2.8e-20	23.30	WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1	[more]

BLAST of Cp4.1LG14g03560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0D5_CUCSA	2.4e-196	81.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1	[more]
M5WIZ4_PRUPE	1.6e-110	57.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1	[more]
B9T1J9_RICCO	7.2e-108	48.65	WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1	[more]
W9R444_9ROSA	9.4e-108	50.91	WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1	[more]
A0A067KXT8_JATCU	7.5e-105	47.97	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03563 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g03560 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	8.6e-36	35.68	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G58230.1	2.0e-08	26.43	binding	[more]

BLAST of Cp4.1LG14g03560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101671\|ref\|XP_008451730.1\|	5.4e-197	80.73	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo]	[more]
gi\|778697541\|ref\|XP_011654344.1\|	3.5e-196	81.41	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus]	[more]
gi\|645239874\|ref\|XP_008226336.1\|	3.3e-122	54.65	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume]	[more]
gi\|657978316\|ref\|XP_008381094.1\|	8.2e-113	51.48	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Malus domestica]	[more]
gi\|1009162129\|ref\|XP_015899270.1\|	2.4e-112	51.03	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017986	WD40_repeat_dom
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR011047	Quinoprotein_ADH-like_supfam
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g03560.1	Cp4.1LG14g03560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 171..208 score: 0.0082coord: 117..151 score: 1.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 114..153 score: 5.2E-6coord: 211..249 score: 190.0coord: 167..208 score: 0.0085coord: 289..328 score: 0
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 174..217 score: 9.005coord: 121..151 score: 10.375coord: 296..337 score: 11
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	unknown	SSF50998	Quinoprotein alcohol dehydrogenase-like	coord: 10..251 score: 6.36E-42coord: 288..344 score: 6.36
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 4..175 score: 8.0E-21coord: 176..251 score: 1.8E-19coord: 288..350 score: 1.8
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 79..217 score: 13.211coord: 296..337 score: 1
None	No IPR available	unknown	Coil	Coil	coord: 408..441 scor
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 6..252 score: 4.1E-149coord: 273..441 score: 4.1E
None	No IPR available	PANTHER	PTHR18763:SF3	SUBFAMILY NOT NAMED	coord: 6..252 score: 4.1E-149coord: 273..441 score: 4.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g03560	Cucsa.273600	Cucumber (Gy14) v1	cgycpeB0714
Cp4.1LG14g03560	CmaCh16G004250	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g03560	CmoCh16G004570	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g03560	Cla002443	Watermelon (97103) v1	cpewmB222
Cp4.1LG14g03560	Csa4G083560	Cucumber (Chinese Long) v2	cpecuB221
Cp4.1LG14g03560	MELO3C016114	Melon (DHL92) v3.5.1	cpemeB196
Cp4.1LG14g03560	ClCG07G010110	Watermelon (Charleston Gray)	cpewcgB209
Cp4.1LG14g03560	CSPI04G08000	Wild cucumber (PI 183967)	cpecpiB223
Cp4.1LG14g03560	Lsi07G002910	Bottle gourd (USVL1VR-Ls)	cpelsiB188
Cp4.1LG14g03560	MELO3C016114.2	Melon (DHL92) v3.6.1	cpemedB239
Cp4.1LG14g03560	CsaV3_4G008220	Cucumber (Chinese Long) v3	cpecucB0266
Cp4.1LG14g03560	Bhi01G002500	Wax gourd	cpewgoB0294
Cp4.1LG14g03560	CsGy4G007870	Cucumber (Gy14) v2	cgybcpeB487
Cp4.1LG14g03560	Carg11356	Silver-seed gourd	carcpeB0926

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g03560	Cucurbita pepo (Zucchini)	cpecpeB234
Cp4.1LG14g03560	Cucurbita pepo (Zucchini)	cpecpeB236
Cp4.1LG14g03560	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g03560	Cucurbita maxima (Rimu)	cmacpeB717
Cp4.1LG14g03560	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g03560	Cucurbita moschata (Rifu)	cmocpeB670
Cp4.1LG14g03560	Cucumber (Gy14) v2	cgybcpeB490
Cp4.1LG14g03560	Silver-seed gourd	carcpeB0057
Cp4.1LG14g03560	Silver-seed gourd	carcpeB0059
Cp4.1LG14g03560	Cucumber (Chinese Long) v3	cpecucB0270
Cp4.1LG14g03560	Wax gourd	cpewgoB0309