CmoCh16G004570 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G004570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	WD-repeat protein, putative
Location	Cmo_Chr16 : 2194095 .. 2195420 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAACGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCAGTCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCATGATTGTTGTCATGCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATACTGATTCAGTGACTTCCATTTACTCTGTCATGGGTATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGAACTGATGGGTTGGTGTACAAGGACTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCCCCAAAGCACGATGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGCGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGGAGAGCAATGAAACGCGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCTGGCTACAATCAAAGAGAAGAAATACAAAGATGA

mRNA sequence

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAACGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCAGTCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCATGATTGTTGTCATGCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATACTGATTCAGTGACTTCCATTTACTCTGTCATGGGTATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGAACTGATGGGTTGGTGTACAAGGACTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCCCCAAAGCACGATGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGCGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGGAGAGCAATGAAACGCGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCTGGCTACAATCAAAGAGAAGAAATACAAAGATGA

Coding sequence (CDS)

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAACGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCAGTCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCATGATTGTTGTCATGCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATACTGATTCAGTGACTTCCATTTACTCTGTCATGGGTATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGAACTGATGGGTTGGTGTACAAGGACTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCCCCAAAGCACGATGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGCGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGGAGAGCAATGAAACGCGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCTGGCTACAATCAAAGAGAAGAAATACAAAGATGA

Homology

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BLAST of CmoCh16G004570 vs. Swiss-Prot
Match: RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.0e-35
Identity = 105/335 (31.34%), Postives = 152/335 (45.37%), Query Frame = 1


Query: 10  VVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G   +A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H +SV+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVTSIYSVMG 189
           CL  S D SLL+SG  DG I V  + +L     ++       H F+ HT SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTDGLVYKDS 249
             ++ I+SSS D  CK WSL  G +L  ++FP  I ++ LDP    F+A   D       
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS------ 244

Query: 250 LRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSIVII 309
            +  I  + +T    T                   ++G+ SE          A+  +   
Sbjct: 245 -KIYIGAINATSEYGT------------------QVLGSVSE-------KGKAITCLAYC 304

Query: 310 NEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS 345
            +GN LIS +EDG + VW     + + TL +  GS
Sbjct: 305 ADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGS 307

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BLAST of CmoCh16G004570 vs. Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 3.5e-23
Identity = 86/351 (24.50%), Postives = 161/351 (45.87%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 65
           +P EV + +    P+   + ++  +G  L ++   ++  RG+       +  + +     
Sbjct: 3   APMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LTA+P+G Y+ AG ++  IH   + +G++L 
Sbjct: 63  -GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTD 185
            L  H + VSCL+ + D S  ISGG D +++V  +  ++QA P         H +S H  
Sbjct: 123 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHAL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T ++   G   +++ +SS+D   K W + SG +L +V+F  +I +V +D +E   F  
Sbjct: 183 PITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCG 242

Query: 246 GTDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           G++G +++  L              T P           R ++ H    + ++      H
Sbjct: 243 GSEGSIFQVDL-------------FTWPGQ---------RERSFHPEQDAGKVFK---GH 302

Query: 306 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAI 351
              V  + +  +G+ L+S + D  + +W V   Q I T+  + G +++ AI
Sbjct: 303 RNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTVALK-GPVTNAAI 318

[Close]

BLAST of CmoCh16G004570 vs. Swiss-Prot
Match: WDR18_DANRE (WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.0e-23
Identity = 90/351 (25.64%), Postives = 151/351 (43.02%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 65
           +P EVVL++   G +     YD  TG+   S+    +  R +T      I  + +     
Sbjct: 3   APVEVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P  V  L A+PDG Y+ AG ++  I+   + +G++L 
Sbjct: 63  -GKNYINVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAG-IAEAIYLWEVSTGNLLA 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTD 185
            L  H + +SC++ + D S  +SGG D +  +  +  +VQ     + T    H  S H+ 
Sbjct: 123 ILSRHFQDLSCIKFTDDSSHFVSGGKDNLAFIWNLSSVVQL--DSSRTPEPRHILSRHSL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T I+  +    +++ ++S+D   K W + SG +L +V+F   I SV  DP E   F  
Sbjct: 183 PITDIHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCG 242

Query: 246 GTDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           G+DG +++ SL                         CS          + SE       H
Sbjct: 243 GSDGNIFQVSL-------------------------CSTSLSRDKTFQSDSEGNQVFKGH 302

Query: 306 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAI 351
              V  + +  +G  L+S + D  + +W V   Q I T+ N  G +++ AI
Sbjct: 303 RNLVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTI-NHRGPVTNAAI 318

[Close]

BLAST of CmoCh16G004570 vs. Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-22
Identity = 83/351 (23.65%), Postives = 159/351 (45.30%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 65
           +P EVV+ +    P+   + ++  +G  L ++   ++  RG+       +  +       
Sbjct: 3   APMEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------ 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LT  P+G Y+ AG ++  I+   + +G++L 
Sbjct: 63  QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTD 185
            L  H + VSCL+ + DGS  +S G D +++   +  ++QA P         H +S HT 
Sbjct: 123 ILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T ++   G   +++ ++S+D   K W++ SG +L +V+F   I SV +D +E   F  
Sbjct: 183 PITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCG 242

Query: 246 GTDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           G+DG +++                       DL  R   R ++      + ++      H
Sbjct: 243 GSDGSIFQ----------------------VDLCSRPGPREQSFQPEQNTGKVFK---GH 302

Query: 306 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAI 351
              V  + +  +G+ L+S + D ++ +W V   Q + T+  + G +++ AI
Sbjct: 303 RNQVTCLSVSTDGSILLSGSHDESVRLWDVKSKQCVRTVPLK-GPVTNAAI 318

[Close]

BLAST of CmoCh16G004570 vs. Swiss-Prot
Match: WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-22
Identity = 82/339 (24.19%), Postives = 151/339 (44.54%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 65
           +P EV + +     +   V ++  +G  L ++   ++  RG+       +  + +     
Sbjct: 3   APMEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LT +P+G Y+ AG +S  I+   + +G++L 
Sbjct: 63  -GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTD 185
            L  H + VSCL+ + D S  ISGG D +++   +  ++QA P         H +S HT 
Sbjct: 123 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T ++   G   +++ ++S+D   K W + SG +L +V+F   I +V +D +E   F  
Sbjct: 183 PITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCG 242

Query: 246 GTDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           G+DG +++  L              T P   + +++    H  K   G           H
Sbjct: 243 GSDGSIFQVDL-------------CTWPGQREKSFQPEQEH-GKVFRG-----------H 302

Query: 306 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D  + +W V   Q + T+
Sbjct: 303 RNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTV 307

[Close]

BLAST of CmoCh16G004570 vs. TrEMBL
Match: A0A0A0L0D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1)

HSP 1 Score: 690.3 bits (1780), Expect = 1.6e-195
Identity = 359/441 (81.41%), Postives = 386/441 (87.53%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPV 60
           M+MP SPQEVVLASSPDGPIVAYDASTGT LASFN SRSPRRGITRAG+S IAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYLFAGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LPAH+K VSCL+LSADGSLLISGGDDG IVVMPIFQLVQAKP+ENAT+HILHQF AHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS+QIVS S+DGRCK W+LLSGT+LHTVVFPCAIFSVVL+PSETEFFAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 TDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           +DGLVYK SL HN K    TD EL P  S+DL YR SLRHKNKHL GTSSELI WS KH+
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDL +ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 NVRRGSHGRAMK-RESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            V+  SHG AM+  E  RLP  MLGL I QT EMQG V A GSDV RAIE+LESAIA+YE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEAKA YNQREE Q
Sbjct: 421 KMLELILKEAKASYNQREETQ 441

[Close]

BLAST of CmoCh16G004570 vs. TrEMBL
Match: M5WIZ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.9e-108
Identity = 205/360 (56.94%), Postives = 255/360 (70.83%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 62
           M  SP E+VL SSPDGPI+AYDAS+G  LA F  SRSPRRG+   G+S IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRRGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+S+AF ++ VPEPVAPLT T DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVPEPVAPLTVTSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AH K VSCL +S D SLLISG DDG IVV+PIFQLV A   ++  + ILH+F+AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDSVEELILHRFAAHSDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTD 242
           +I S MG+ +SQI+S S+D  CKFWSLL GT+L T+VFPC I  V L+P++ EF+ AG+D
Sbjct: 181 AIVSGMGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTQPEFYVAGSD 240

Query: 243 GLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           G V+K SL+   + L++                              SELI+W+PKH  A
Sbjct: 241 GSVHKGSLKVGSRQLVT----------------------------QGSELIAWTPKHGGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKERNV 362
           VVS+V++N G NLISA+EDG++WVW+V+ GQVIM L NEMGSISDL  AT     K  +V
Sbjct: 301 VVSMVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAATGINCSKANDV 332

[Close]

BLAST of CmoCh16G004570 vs. TrEMBL
Match: B9T1J9_RICCO (WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 8.0e-107
Identity = 216/444 (48.65%), Postives = 278/444 (62.61%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 62
           M FS  E+VL SSPDGPI AYD  +GT LA F  SRSPR G+   G++ IA SHI   TA
Sbjct: 1   MSFSSHEIVLTSSPDGPITAYDTISGTTLARFTGSRSPRHGLAIVGKAYIAASHISSATA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+Y WW+SSA   + +PEPVAPL ATPDG YLFAGGL G ++ LS+PSG++L S P
Sbjct: 61  SGSIHLYTWWSSSALHHLPLPEPVAPLAATPDGSYLFAGGLFGNVYALSIPSGNILKSFP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AH K VSC+ +S+D SLLISGGDDG IVV+PIFQLV+A   EN +  ILH F AH   VT
Sbjct: 121 AHSKPVSCINISSDSSLLISGGDDGNIVVVPIFQLVEAPGSENESNLILHSFPAHDGPVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTD 242
            I   MG+    IVS S D  CK WSLL G  L TV FPC+I  + LDP+E EF+AAG++
Sbjct: 181 GITVCMGICHPTIVSCSTDSTCKLWSLLDGRNLQTVAFPCSISGIALDPTEVEFYAAGSN 240

Query: 243 GLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GL+YK SL+   +  I+                               +LI+W+ KHD A
Sbjct: 241 GLIYKGSLQAGSRKGIA----------------------------QGRKLITWTQKHDGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKERNV 362
           VVS+V+INEG NL+SAAEDG++++W +  GQ+IM + N M +ISD+ +A      +E   
Sbjct: 301 VVSVVVINEGKNLVSAAEDGSVFIWGIENGQLIMVIGNNMDNISDVVVARGICDGRE--- 360

Query: 363 RRGSHGRAMKRESSRLPSPMLGLL--------INQTAEMQGAVAAGGSDVRRAIELLESA 422
               +G  +  E +      LGL         I  T  ++ A+A    + R+AI+ LESA
Sbjct: 361 ---GYGNRVGNEMNEFGGRNLGLSSKELNFRPIKDTVNVENALAVAAKNSRKAIDKLESA 410

Query: 423 IAMYEKMLELILKEAKAGYNQREE 439
           I +YE++LELILKEAKAG ++  E
Sbjct: 421 IGVYERLLELILKEAKAGTSKNGE 410

[Close]

BLAST of CmoCh16G004570 vs. TrEMBL
Match: W9R444_9ROSA (WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 9.8e-105
Identity = 219/440 (49.77%), Postives = 286/440 (65.00%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 62
           M  SP EV+L SSP+GPI+AYDAS+G  +  F  SRSPRRG+   G+  IA SHI PVTA
Sbjct: 1   MSSSPHEVILTSSPEGPIIAYDASSGASVTCFTGSRSPRRGLALVGKIFIAASHISPVTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIHIYNWW+S+AF  + VPEPVAPL  TPDG YLFAGGLSG ++ LS+PSGDVL S+ 
Sbjct: 61  SGSIHIYNWWSSTAFHKLPVPEPVAPLIGTPDGSYLFAGGLSGSVYALSVPSGDVLRSVH 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AH+KSVSCL +S DGSLLISG DDG IVV+PIFQLV +   ++  + I+H+ +AH+ +VT
Sbjct: 121 AHKKSVSCLRISEDGSLLISGSDDGTIVVIPIFQLVGSSINQDMDQLIMHKLAAHSGAVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTD 242
            I S   + +SQI+S S+D  CKFWSLL GT L TVVFP  I  +VL+PSE+EF+AAG+D
Sbjct: 181 DIISGKELCNSQIISCSLDCTCKFWSLLRGTHLRTVVFPSTILGLVLNPSESEFYAAGSD 240

Query: 243 GLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           G VYK S++   + + S+                          G   EL+  +  H+ A
Sbjct: 241 GSVYKGSIKVGSRRIPSS-------------------------KGQDHELVI-AQNHNGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMG-SISDLAIATEKRHEKE-- 362
           +VS+ ++N G NL+SA+EDG +++ +++ GQV++ L NE G SISDL +AT     K+  
Sbjct: 301 IVSLAMVNSGRNLVSASEDGGVYIQKIDDGQVVLALGNEFGSSISDLVVATGIGCGKDIV 360

Query: 363 ---------RNVRRGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIEL 422
                      VR G  GR +   SS          + +  EM+  +A    D  RAI+L
Sbjct: 361 GSRLGSGEFDGVRIGLSGRQVMMSSSP---------VKERVEMEDVLALAEKDRSRAIDL 405

Query: 423 LESAIAMYEKMLELILKEAK 431
           LESAIAMYE++LELILKEAK
Sbjct: 421 LESAIAMYERLLELILKEAK 405

[Close]

BLAST of CmoCh16G004570 vs. TrEMBL
Match: A0A067KXT8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03563 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 4.1e-103
Identity = 211/444 (47.52%), Postives = 274/444 (61.71%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 62
           M FS  E+VL SSP GPI  YD  +GT LA F+ SRSPR G+  AG++ IA SHI   TA
Sbjct: 1   MSFSSHEIVLTSSPHGPITVYDTVSGTTLARFSGSRSPRHGLVLAGKAYIAASHISSATA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+YNWW+ +A   + VPEPVAPL +TPDG +LFAGGLSG I  LS+PSG+++ S+P
Sbjct: 61  SGSIHLYNWWSPTALHHLPVPEPVAPLASTPDGLFLFAGGLSGDIFALSIPSGNIIKSVP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AH K VS L++S+D SLLISGGDDG+IVVM IFQL+ A   EN +  ILH F AH   VT
Sbjct: 121 AHHKPVSSLKISSDSSLLISGGDDGVIVVMAIFQLLDASGNENPSDSILHSFVAHDGPVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTD 242
           +I S   +S   IVS S D  CK WSLL G  LHTV FPC I  + LD    EF+AAG+D
Sbjct: 181 AIRSCTRLSLPAIVSCSSDCTCKLWSLLEGENLHTVAFPCVILGIALDTMGAEFYAAGSD 240

Query: 243 GLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GL+YK S +          +E    AS                   S EL  W+ +H  A
Sbjct: 241 GLIYKGSFK----------AESRKEAS------------------RSRELAIWAERHGGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKERNV 362
           VVS+V++NEG NL+SA EDG++++W++ +GQVIM L N M  ISD+ +A      K    
Sbjct: 301 VVSVVVVNEGKNLVSAGEDGSVYIWEIERGQVIMVLGNNMEGISDVVVA------KGIGE 360

Query: 363 RRGSHGRAMKRESSRLPSPMLGLL--------INQTAEMQGAVAAGGSDVRRAIELLESA 422
            +G +G  +  E +      LGL         I +  +M+  +    +D R+AI++LESA
Sbjct: 361 GKGYYGNGINNEMNEFVGGSLGLSGKELSSRPIKEAMDMEDVLNVAANDRRKAIDMLESA 410

Query: 423 IAMYEKMLELILKEAKAGYNQREE 439
           I +YE++LELILKEAK   ++  E
Sbjct: 421 IGVYERLLELILKEAKGSTSKNGE 410

[Close]

BLAST of CmoCh16G004570 vs. TAIR10
Match: AT3G49180.1 (AT3G49180.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 149.4 bits (376), Expect = 5.0e-36
Identity = 105/335 (31.34%), Postives = 152/335 (45.37%), Query Frame = 1


Query: 10  VVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G   +A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H +SV+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVTSIYSVMG 189
           CL  S D SLL+SG  DG I V  + +L     ++       H F+ HT SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTDGLVYKDS 249
             ++ I+SSS D  CK WSL  G +L  ++FP  I ++ LDP    F+A   D       
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS------ 244

Query: 250 LRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSIVII 309
            +  I  + +T    T                   ++G+ SE          A+  +   
Sbjct: 245 -KIYIGAINATSEYGT------------------QVLGSVSE-------KGKAITCLAYC 304

Query: 310 NEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS 345
            +GN LIS +EDG + VW     + + TL +  GS
Sbjct: 305 ADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGS 307

[Close]

BLAST of CmoCh16G004570 vs. TAIR10
Match: AT1G58230.1 (AT1G58230.1 binding)

HSP 1 Score: 55.5 bits (132), Expect = 9.9e-08
Identity = 36/140 (25.71%), Postives = 62/140 (44.29%), Query Frame = 1


Query: 94   DGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVSCLELSADGSLLISGGDDGMIVVMP 153
            + F +  G      H +SL  G V+ S+  H+  VSC+ ++AD ++L +G  D  ++V  
Sbjct: 2339 ENFLVSCGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGSYDTTVMVWD 2398

Query: 154  IFQL-VQAKPQENATKHIL-----------HQFSAHTDSVTSIYSVMGMSSSQIVSSSMD 213
            I ++    K   N    +L           H    H D +T +Y  +      ++S S D
Sbjct: 2399 ILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLY--VSTDLDIVISGSKD 2458

Query: 214  GRCKFWSLLSGTVLHTVVFP 222
            G C F +L  G  + ++  P
Sbjct: 2459 GTCVFHTLREGRYIRSLKHP 2476

[Close]

BLAST of CmoCh16G004570 vs. NCBI nr
Match: gi|659101671|ref|XP_008451730.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo])

HSP 1 Score: 693.0 bits (1787), Expect = 3.5e-196
Identity = 356/441 (80.73%), Postives = 389/441 (88.21%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPV 60
           M+MP SPQEVVLASSPDGPIVAYDASTGTPLA+FN SRSPRRGITRAG+S IAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTPLANFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYL AGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLLAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LPAH+K VSCL+LSADGSLLISGGDDG IVVMPIFQLVQAKP+ENAT+HILHQF AHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS++IVS S+D RCKFWSLLSGT+LHTVVFPCAIFSVVL+PSE EFFAAG
Sbjct: 181 VTSIYSGMGISSTKIVSCSLDARCKFWSLLSGTILHTVVFPCAIFSVVLEPSEIEFFAAG 240

Query: 241 TDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           +DGLVYK SLRHN KH   TD +L P  S+DL Y+ SLRHKNKHL GTSSELI WSPKH+
Sbjct: 241 SDGLVYKGSLRHNNKHRRGTDYDLIPQISNDLVYKRSLRHKNKHLTGTSSELIPWSPKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDL +ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERAHGKEQ 360

Query: 361 NVRRGSHGRAMK-RESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            VR   HGR +K  E  RLP  MLGL I +T +MQG +AA GSDVRRAIE+LESAIA+YE
Sbjct: 361 CVRTDRHGREIKISERFRLPIKMLGLSIKETVDMQGELAAAGSDVRRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEA+A YNQREE Q
Sbjct: 421 KMLELILKEAEASYNQREETQ 441

[Close]

BLAST of CmoCh16G004570 vs. NCBI nr
Match: gi|778697541|ref|XP_011654344.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus])

HSP 1 Score: 690.3 bits (1780), Expect = 2.3e-195
Identity = 359/441 (81.41%), Postives = 386/441 (87.53%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPV 60
           M+MP SPQEVVLASSPDGPIVAYDASTGT LASFN SRSPRRGITRAG+S IAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYLFAGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LPAH+K VSCL+LSADGSLLISGGDDG IVVMPIFQLVQAKP+ENAT+HILHQF AHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS+QIVS S+DGRCK W+LLSGT+LHTVVFPCAIFSVVL+PSETEFFAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 TDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           +DGLVYK SL HN K    TD EL P  S+DL YR SLRHKNKHL GTSSELI WS KH+
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDL +ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 NVRRGSHGRAMK-RESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            V+  SHG AM+  E  RLP  MLGL I QT EMQG V A GSDV RAIE+LESAIA+YE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEAKA YNQREE Q
Sbjct: 421 KMLELILKEAKASYNQREETQ 441

[Close]

BLAST of CmoCh16G004570 vs. NCBI nr
Match: gi|645239874|ref|XP_008226336.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume])

HSP 1 Score: 439.9 bits (1130), Expect = 5.3e-120
Identity = 237/438 (54.11%), Postives = 298/438 (68.04%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 62
           M  SP E+VL SSPDGPI+AYDAS+G  LA F  SRSPR G+   G+S IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRGGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+S+AF ++ V EPVAPLTAT DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVLEPVAPLTATSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AH K VSCL +S D SLLISG DDG IVV+PIFQLV A   +N  + ILH+F+AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDNVEELILHRFAAHSDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTD 242
           +I S  G+ +SQI+S S+D  CKFWSLL GT+L T+VFPC I  V L+P+E EF+ AG+D
Sbjct: 181 AIVSGTGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTEPEFYVAGSD 240

Query: 243 GLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           G V+K SL+   + L++                              SELISW+PKH  A
Sbjct: 241 GSVHKGSLKVGTRQLVT----------------------------QGSELISWTPKHSGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKER-- 362
           VVS+V++N G NLISA+EDG++WVW+V+ GQVIM L NEMGSISDL  AT     K    
Sbjct: 301 VVSVVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAATGINCSKANGF 360

Query: 363 NVRRGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEK 422
            +R G++G       S     ++ + I +  EM+ A+    +D  RAI++LESAIAMYE+
Sbjct: 361 GMRNGAYGSGNCHFRSS-GKELMNMPIKKILEMEDALKVAANDRNRAIDMLESAIAMYER 409

Query: 423 MLELILKEAKAGYNQREE 439
           +LELILKEAK G    E+
Sbjct: 421 LLELILKEAKRGSRNNEQ 409

[Close]

BLAST of CmoCh16G004570 vs. NCBI nr
Match: gi|657978316|ref|XP_008381094.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Malus domestica])

HSP 1 Score: 412.1 bits (1058), Expect = 1.2e-111
Identity = 230/447 (51.45%), Postives = 287/447 (64.21%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 62
           M  S  E+VL SSPDGPI+AYDAS+GT LA F  SRSPRRG+T  G+  IA SH+ P T 
Sbjct: 1   MSSSSHEIVLXSSPDGPIIAYDASSGTALAQFTGSRSPRRGLTIVGKPYIAASHVSPTTG 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+YNW +SSA  +  VPEPVAPL A  DG YLFAGGLSG +HTLS+PSGDVL SL 
Sbjct: 61  SGSIHLYNWCSSSALHNXQVPEPVAPLAAMSDGAYLFAGGLSGSVHTLSIPSGDVLKSLA 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKP---QENATKHILHQFSAHTD 182
            H K VSCL +S D SLLISG DDG IVV+PIFQLV A      +N    +LH+FSAH+D
Sbjct: 121 VHNKXVSCLGISDDESLLISGSDDGSIVVVPIFQLVAASGYVLYDNVEDLVLHRFSAHSD 180

Query: 183 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 242
           SVT++ S +G+ +SQ++S S+DG CKFWSLL   +L TVVFPCAI  + L+P E EF+AA
Sbjct: 181 SVTAVVSGVGLYTSQVISCSLDGTCKFWSLLXAALLLTVVFPCAIXXIALNPREPEFYAA 240

Query: 243 GTDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 302
           G+DG V K   R   + L+                                +LI+WSPKH
Sbjct: 241 GSDGSVXKGLWRTGKRQLVM----------------------------QGKDLITWSPKH 300

Query: 303 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEK- 362
           D  VVS+V++NEG NL+SA+EDG++WVWQV+ GQV+M L NEMGSISDL  AT   + K 
Sbjct: 301 DGGVVSVVMVNEGRNLLSASEDGSVWVWQVDAGQVVMVLANEMGSISDLVAATGTNYSKG 360

Query: 363 ------ERNVRRGSHGRAMK-RESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELL 422
                  R  R GS    +  +E + +P  ML        +M   +     D  RAI++L
Sbjct: 361 XDFSASNRGYRNGSCEFGLTGKELTSMPIKML--------KMDEMLKVAARDRSRAIDML 411

Query: 423 ESAIAMYEKMLELILKEAKAGYNQREE 439
           ESAI MYE++LELILKEAK   +  ++
Sbjct: 421 ESAIGMYERLLELILKEAKKSSSNNKQ 411

[Close]

BLAST of CmoCh16G004570 vs. NCBI nr
Match: gi|1009162129|ref|XP_015899270.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba])

HSP 1 Score: 409.8 bits (1052), Expect = 5.9e-111
Identity = 219/437 (50.11%), Postives = 286/437 (65.45%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPV 60
           MS  F P E++L SSPDGPI+A+DAS+G  L  F+DSRSPRRG+  AG + IA SHI P 
Sbjct: 1   MSSSF-PYEIILTSSPDGPIIAHDASSGATLTHFSDSRSPRRGLAVAGNTFIAASHISPT 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TA GSIH+YNWW+S+AF ++ VPEPVAP+TAT DG  +FAGGLSGC++ LSLPSGD+L S
Sbjct: 61  TACGSIHLYNWWSSTAFHNLPVPEPVAPITATSDGALIFAGGLSGCVYALSLPSGDILKS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LP+H K VSCL +S DGSLL+SG DDG I V+PIFQL+ +   EN+   ++ +F+AH+DS
Sbjct: 121 LPSHSKPVSCLGISDDGSLLVSGSDDGTIAVVPIFQLMGSSENENSDYAVMQKFTAHSDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VT+I    G+ +SQI+SSS+D  CKFWSLL GT L TV F C I  +VLDP+E+EF+AAG
Sbjct: 181 VTAIVFGSGLCTSQIISSSLDFTCKFWSLLRGTQLKTVSFRCGILGIVLDPTESEFYAAG 240

Query: 241 TDGLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           +DG VYK                             S+   ++ L     EL+ W  KH+
Sbjct: 241 SDGSVYK----------------------------ASINAGSRELANPGHELVEWKEKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS-ISDLAIATEKRHEKE 360
             VVS+ ++ EG NLI+A+EDG++WVW V +G+V++ L N MGS ISD+ +A    + K 
Sbjct: 301 GPVVSLAMVKEGRNLITASEDGSVWVWDVERGKVVIELGNTMGSMISDMVVAKGISYGKG 360

Query: 361 RNVRRGSHGRAMKRESSRL------PSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLES 420
                GS G      S            M+GL + +T EM+  +     D  RAI++LES
Sbjct: 361 HGSGAGSGGGGSNNGSEEWRIGFCGEELMMGLGMKETMEMEDVLRVAEKDRSRAIDMLES 408

Query: 421 AIAMYEKMLELILKEAK 431
           AI MYEK+LELILKEAK
Sbjct: 421 AIGMYEKLLELILKEAK 408

The following BLAST results are available for this feature:

BLAST of CmoCh16G004570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RID3_ARATH	9.0e-35	31.34	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1	[more]
WDR18_HUMAN	3.5e-23	24.50	WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2	[more]
WDR18_DANRE	6.0e-23	25.64	WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1	[more]
WDR18_RAT	5.1e-22	23.65	WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1	[more]
WDR18_BOVIN	5.1e-22	24.19	WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1	[more]

BLAST of CmoCh16G004570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0D5_CUCSA	1.6e-195	81.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1	[more]
M5WIZ4_PRUPE	1.9e-108	56.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1	[more]
B9T1J9_RICCO	8.0e-107	48.65	WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1	[more]
W9R444_9ROSA	9.8e-105	49.77	WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1	[more]
A0A067KXT8_JATCU	4.1e-103	47.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03563 PE=4 SV=1	[more]

BLAST of CmoCh16G004570 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	5.0e-36	31.34	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G58230.1	9.9e-08	25.71	binding	[more]

BLAST of CmoCh16G004570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101671\|ref\|XP_008451730.1\|	3.5e-196	80.73	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo]	[more]
gi\|778697541\|ref\|XP_011654344.1\|	2.3e-195	81.41	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus]	[more]
gi\|645239874\|ref\|XP_008226336.1\|	5.3e-120	54.11	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume]	[more]
gi\|657978316\|ref\|XP_008381094.1\|	1.2e-111	51.45	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Malus domestica]	[more]
gi\|1009162129\|ref\|XP_015899270.1\|	5.9e-111	50.11	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR011047	Quinoprotein_ADH-like_supfam
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004570.1	CmoCh16G004570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 171..208 score: 0.012coord: 117..150 score: 1.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 211..247 score: 170.0coord: 114..153 score: 1.4E-4coord: 167..208 score: 0.0041coord: 289..328 score: 0
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 174..217 score: 9.038coord: 121..151 score: 9.773coord: 296..337 score: 11
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	unknown	SSF50998	Quinoprotein alcohol dehydrogenase-like	coord: 288..348 score: 2.9E-42coord: 10..251 score: 2.9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 3..252 score: 1.9E-39coord: 289..352 score: 1.9
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 296..337 score: 11.207coord: 79..217 score: 12
None	No IPR available	unknown	Coil	Coil	coord: 408..428 scor
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 6..252 score: 6.1E-148coord: 273..441 score: 6.1E
None	No IPR available	PANTHER	PTHR18763:SF3	SUBFAMILY NOT NAMED	coord: 6..252 score: 6.1E-148coord: 273..441 score: 6.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G004570	Cucsa.273600	Cucumber (Gy14) v1	cgycmoB0750
CmoCh16G004570	CmaCh16G004250	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G004570	Cla002443	Watermelon (97103) v1	cmowmB305
CmoCh16G004570	Csa4G083560	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G004570	MELO3C016114	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G004570	ClCG07G010110	Watermelon (Charleston Gray)	cmowcgB293
CmoCh16G004570	CSPI04G08000	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G004570	Lsi07G002910	Bottle gourd (USVL1VR-Ls)	cmolsiB318
CmoCh16G004570	Cp4.1LG14g03560	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G004570	MELO3C016114.2	Melon (DHL92) v3.6.1	cmomedB337
CmoCh16G004570	CsaV3_4G008220	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G004570	Cla97C07G136790	Watermelon (97103) v2	cmowmbB335
CmoCh16G004570	Bhi01G002500	Wax gourd	cmowgoB0433
CmoCh16G004570	CsGy4G007870	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G004570	Carg11356	Silver-seed gourd	carcmoB0898

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G004570	Cucumber (Chinese Long) v3	cmocucB0393
CmoCh16G004570	Wax gourd	cmowgoB0448
CmoCh16G004570	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G004570	Cucurbita moschata (Rifu)	cmocmoB288
CmoCh16G004570	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G004570	Cucurbita maxima (Rimu)	cmacmoB703
CmoCh16G004570	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G004570	Cucurbita pepo (Zucchini)	cmocpeB315
CmoCh16G004570	Bottle gourd (USVL1VR-Ls)	cmolsiB299
CmoCh16G004570	Cucumber (Gy14) v2	cgybcmoB470
CmoCh16G004570	Silver-seed gourd	carcmoB0054
CmoCh16G004570	Silver-seed gourd	carcmoB0055